Miyakogusa Predicted Gene

Lj4g3v0655900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0655900.1 Non Characterized Hit- tr|I0YVT9|I0YVT9_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa subell,46,1e-17,no
description,Cytochrome c domain; Cytochrome c,Cytochrome c domain;
CYTC,Cytochrome c domain; seg,,CUFF.47821.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g083990.2 | cytochrome protein C | HC | chr4:32684983-3268...   238   1e-63
Medtr4g083990.1 | cytochrome protein C | HC | chr4:32684983-3268...   238   1e-63

>Medtr4g083990.2 | cytochrome protein C | HC |
           chr4:32684983-32688502 | 20130731
          Length = 173

 Score =  238 bits (608), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 137/177 (77%), Gaps = 6/177 (3%)

Query: 1   MKLAGMISCSTYYNRLLSVKDSVKREEE--NPIPRRKAKELKFSLKXXXXXXXXXXXXXX 58
           MKLA +IS    YN  +S+KD+VKREE+  N IP +  +++KF                 
Sbjct: 1   MKLACLIS---GYNNPVSIKDNVKREEKHVNLIPTKTKQQVKF-FNNLAPPLAAAFLLFS 56

Query: 59  XISGTPVSSGQTIDIQRGATLFRKACIGCHDAGGNIIQPGSTLYTKDLQRNGVDTEEAIY 118
            I  TPVS  QTIDIQRGATLF + CIGCHDAGGNIIQPGSTL+TKDLQRNGVDTEE IY
Sbjct: 57  PICATPVSIAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIY 116

Query: 119 RISYYGKERMPGFGKECMPRGQCTFGARLEDEDIKLLAEFVKLQANKGWPSIELQEK 175
           R++YYGK RMPGFGKECMPRGQCTFGARLEDEDIK+LAEFVKLQA+KGWPSIE ++K
Sbjct: 117 RVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGWPSIETEQK 173


>Medtr4g083990.1 | cytochrome protein C | HC |
           chr4:32684983-32688815 | 20130731
          Length = 173

 Score =  238 bits (608), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 137/177 (77%), Gaps = 6/177 (3%)

Query: 1   MKLAGMISCSTYYNRLLSVKDSVKREEE--NPIPRRKAKELKFSLKXXXXXXXXXXXXXX 58
           MKLA +IS    YN  +S+KD+VKREE+  N IP +  +++KF                 
Sbjct: 1   MKLACLIS---GYNNPVSIKDNVKREEKHVNLIPTKTKQQVKF-FNNLAPPLAAAFLLFS 56

Query: 59  XISGTPVSSGQTIDIQRGATLFRKACIGCHDAGGNIIQPGSTLYTKDLQRNGVDTEEAIY 118
            I  TPVS  QTIDIQRGATLF + CIGCHDAGGNIIQPGSTL+TKDLQRNGVDTEE IY
Sbjct: 57  PICATPVSIAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIY 116

Query: 119 RISYYGKERMPGFGKECMPRGQCTFGARLEDEDIKLLAEFVKLQANKGWPSIELQEK 175
           R++YYGK RMPGFGKECMPRGQCTFGARLEDEDIK+LAEFVKLQA+KGWPSIE ++K
Sbjct: 117 RVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGWPSIETEQK 173