Miyakogusa Predicted Gene

Lj4g3v0643880.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0643880.2 tr|K1PUP5|K1PUP5_CRAGI Phytanoyl-CoA dioxygenase
domain-containing protein 1 OS=Crassostrea gigas PE,32.65,0.0000008,no
description,NULL; Clavaminate synthase-like,NULL; seg,NULL;
PhyH,Phytanoyl-CoA dioxygenase; PHYTA,CUFF.47769.2
         (249 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g084560.1 | phytanoyl-CoA dioxygenase domain protein | HC ...   449   e-126
Medtr4g084560.4 | phytanoyl-CoA dioxygenase domain protein | HC ...   448   e-126
Medtr4g084560.5 | phytanoyl-CoA dioxygenase domain protein | HC ...   432   e-121
Medtr4g084560.2 | phytanoyl-CoA dioxygenase domain protein | HC ...   422   e-118
Medtr4g084560.3 | phytanoyl-CoA dioxygenase domain protein | HC ...   421   e-118

>Medtr4g084560.1 | phytanoyl-CoA dioxygenase domain protein | HC |
           chr4:32921440-32917137 | 20130731
          Length = 280

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/249 (84%), Positives = 226/249 (90%)

Query: 1   MMKRMEQLVDNFDPSSTASIFSTKNQQKLTDDYFFDSVERVSFFFEEKAFGDNGDLKQPK 60
           M+KRMEQLVD FDPSSTASIFSTKNQQ+LTDDYFF+S E +SFFFEEKAFGD+G+LKQPK
Sbjct: 32  MVKRMEQLVDQFDPSSTASIFSTKNQQQLTDDYFFESAENISFFFEEKAFGDDGNLKQPK 91

Query: 61  QLSINKVGHALHEIEPAXXXXXXXXXXXXLMHSLGYKRPAVMQSMYIFKQPGIGGEVVPH 120
           QLS+NKVGHALHEIEPA            LM SLGYKRP +MQSMYIFKQPGIGGEVVPH
Sbjct: 92  QLSLNKVGHALHEIEPAFKKFSSSEKASGLMSSLGYKRPVIMQSMYIFKQPGIGGEVVPH 151

Query: 121 QDSSFLYTEPQTCTGLWLAIEDATKLNGCLWAIPGSHKNGLVRRFLRDENGVKFDRPSPS 180
           QD+SF+YTEPQTCTGLWLA+EDAT LNGCLWAIPGSHKNGLVR+F RDE+GVKFDRPSPS
Sbjct: 152 QDNSFIYTEPQTCTGLWLALEDATILNGCLWAIPGSHKNGLVRKFFRDEDGVKFDRPSPS 211

Query: 181 YDQKDFVPIEVKSGSLVVIHGDLIHQSFENLSPKSRHAYSLHVVDTDGCKWAPENWIRRK 240
           YDQKDFVPIEVK+GSLVVIHG+LIHQSFEN S KSRHAYSLHVVDT GCKWA ENWIRRK
Sbjct: 212 YDQKDFVPIEVKAGSLVVIHGNLIHQSFENQSTKSRHAYSLHVVDTVGCKWAAENWIRRK 271

Query: 241 VEPEPLYVS 249
           VEPEPLYV+
Sbjct: 272 VEPEPLYVN 280


>Medtr4g084560.4 | phytanoyl-CoA dioxygenase domain protein | HC |
           chr4:32921382-32917194 | 20130731
          Length = 249

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/249 (84%), Positives = 226/249 (90%)

Query: 1   MMKRMEQLVDNFDPSSTASIFSTKNQQKLTDDYFFDSVERVSFFFEEKAFGDNGDLKQPK 60
           M+KRMEQLVD FDPSSTASIFSTKNQQ+LTDDYFF+S E +SFFFEEKAFGD+G+LKQPK
Sbjct: 1   MVKRMEQLVDQFDPSSTASIFSTKNQQQLTDDYFFESAENISFFFEEKAFGDDGNLKQPK 60

Query: 61  QLSINKVGHALHEIEPAXXXXXXXXXXXXLMHSLGYKRPAVMQSMYIFKQPGIGGEVVPH 120
           QLS+NKVGHALHEIEPA            LM SLGYKRP +MQSMYIFKQPGIGGEVVPH
Sbjct: 61  QLSLNKVGHALHEIEPAFKKFSSSEKASGLMSSLGYKRPVIMQSMYIFKQPGIGGEVVPH 120

Query: 121 QDSSFLYTEPQTCTGLWLAIEDATKLNGCLWAIPGSHKNGLVRRFLRDENGVKFDRPSPS 180
           QD+SF+YTEPQTCTGLWLA+EDAT LNGCLWAIPGSHKNGLVR+F RDE+GVKFDRPSPS
Sbjct: 121 QDNSFIYTEPQTCTGLWLALEDATILNGCLWAIPGSHKNGLVRKFFRDEDGVKFDRPSPS 180

Query: 181 YDQKDFVPIEVKSGSLVVIHGDLIHQSFENLSPKSRHAYSLHVVDTDGCKWAPENWIRRK 240
           YDQKDFVPIEVK+GSLVVIHG+LIHQSFEN S KSRHAYSLHVVDT GCKWA ENWIRRK
Sbjct: 181 YDQKDFVPIEVKAGSLVVIHGNLIHQSFENQSTKSRHAYSLHVVDTVGCKWAAENWIRRK 240

Query: 241 VEPEPLYVS 249
           VEPEPLYV+
Sbjct: 241 VEPEPLYVN 249


>Medtr4g084560.5 | phytanoyl-CoA dioxygenase domain protein | HC |
           chr4:32921382-32917111 | 20130731
          Length = 286

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/257 (80%), Positives = 223/257 (86%), Gaps = 10/257 (3%)

Query: 1   MMKRMEQLVDNFDPSSTASIFSTKNQQKLTDDYFFDSVERVSFFFEEKAFGDNGDLKQPK 60
           M+KRMEQLVD FDPSSTASIFSTKNQ  LTDDYFF+S E +SFFFEEKAFGD+G+LKQPK
Sbjct: 32  MVKRMEQLVDQFDPSSTASIFSTKNQ--LTDDYFFESAENISFFFEEKAFGDDGNLKQPK 89

Query: 61  QLSINKVGHALHEIEPAXXXXXXXXXXXXLMHSLGYKRPAVMQSMYIFKQPGIGGEVVPH 120
           QLS+NKVGHALHEIEPA            LM SLGYKRP +MQSMYIFKQPGIGGEVVPH
Sbjct: 90  QLSLNKVGHALHEIEPAFKKFSSSEKASGLMSSLGYKRPVIMQSMYIFKQPGIGGEVVPH 149

Query: 121 QDSSFLYTEPQTCTGLWLAIEDATKLNGCLWAIPGSHKNGLVRRFLRDENGVKFDRPSPS 180
           QD+SF+YTEPQTCTGLWLA+EDAT LNGCLWAIPGSHKNGLVR+F RDE+GVKFDRPSPS
Sbjct: 150 QDNSFIYTEPQTCTGLWLALEDATILNGCLWAIPGSHKNGLVRKFFRDEDGVKFDRPSPS 209

Query: 181 YDQKDFVPIEVKSGSLVVIHGDLIHQ--------SFENLSPKSRHAYSLHVVDTDGCKWA 232
           YDQKDFVPIEVK+GSLVVIHG+LIHQ         FEN S KSRHAYSLHVVDT GCKWA
Sbjct: 210 YDQKDFVPIEVKAGSLVVIHGNLIHQRFAKIIFSCFENQSTKSRHAYSLHVVDTVGCKWA 269

Query: 233 PENWIRRKVEPEPLYVS 249
            ENWIRRKVEPEPLYV+
Sbjct: 270 AENWIRRKVEPEPLYVN 286


>Medtr4g084560.2 | phytanoyl-CoA dioxygenase domain protein | HC |
           chr4:32921382-32917194 | 20130731
          Length = 270

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/249 (81%), Positives = 216/249 (86%), Gaps = 10/249 (4%)

Query: 1   MMKRMEQLVDNFDPSSTASIFSTKNQQKLTDDYFFDSVERVSFFFEEKAFGDNGDLKQPK 60
           M+KRMEQLVD FDPSSTASIFSTKNQ          S E +SFFFEEKAFGD+G+LKQPK
Sbjct: 32  MVKRMEQLVDQFDPSSTASIFSTKNQ----------SAENISFFFEEKAFGDDGNLKQPK 81

Query: 61  QLSINKVGHALHEIEPAXXXXXXXXXXXXLMHSLGYKRPAVMQSMYIFKQPGIGGEVVPH 120
           QLS+NKVGHALHEIEPA            LM SLGYKRP +MQSMYIFKQPGIGGEVVPH
Sbjct: 82  QLSLNKVGHALHEIEPAFKKFSSSEKASGLMSSLGYKRPVIMQSMYIFKQPGIGGEVVPH 141

Query: 121 QDSSFLYTEPQTCTGLWLAIEDATKLNGCLWAIPGSHKNGLVRRFLRDENGVKFDRPSPS 180
           QD+SF+YTEPQTCTGLWLA+EDAT LNGCLWAIPGSHKNGLVR+F RDE+GVKFDRPSPS
Sbjct: 142 QDNSFIYTEPQTCTGLWLALEDATILNGCLWAIPGSHKNGLVRKFFRDEDGVKFDRPSPS 201

Query: 181 YDQKDFVPIEVKSGSLVVIHGDLIHQSFENLSPKSRHAYSLHVVDTDGCKWAPENWIRRK 240
           YDQKDFVPIEVK+GSLVVIHG+LIHQSFEN S KSRHAYSLHVVDT GCKWA ENWIRRK
Sbjct: 202 YDQKDFVPIEVKAGSLVVIHGNLIHQSFENQSTKSRHAYSLHVVDTVGCKWAAENWIRRK 261

Query: 241 VEPEPLYVS 249
           VEPEPLYV+
Sbjct: 262 VEPEPLYVN 270


>Medtr4g084560.3 | phytanoyl-CoA dioxygenase domain protein | HC |
           chr4:32921382-32917194 | 20130731
          Length = 266

 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/235 (83%), Positives = 212/235 (90%)

Query: 1   MMKRMEQLVDNFDPSSTASIFSTKNQQKLTDDYFFDSVERVSFFFEEKAFGDNGDLKQPK 60
           M+KRMEQLVD FDPSSTASIFSTKNQQ+LTDDYFF+S E +SFFFEEKAFGD+G+LKQPK
Sbjct: 32  MVKRMEQLVDQFDPSSTASIFSTKNQQQLTDDYFFESAENISFFFEEKAFGDDGNLKQPK 91

Query: 61  QLSINKVGHALHEIEPAXXXXXXXXXXXXLMHSLGYKRPAVMQSMYIFKQPGIGGEVVPH 120
           QLS+NKVGHALHEIEPA            LM SLGYKRP +MQSMYIFKQPGIGGEVVPH
Sbjct: 92  QLSLNKVGHALHEIEPAFKKFSSSEKASGLMSSLGYKRPVIMQSMYIFKQPGIGGEVVPH 151

Query: 121 QDSSFLYTEPQTCTGLWLAIEDATKLNGCLWAIPGSHKNGLVRRFLRDENGVKFDRPSPS 180
           QD+SF+YTEPQTCTGLWLA+EDAT LNGCLWAIPGSHKNGLVR+F RDE+GVKFDRPSPS
Sbjct: 152 QDNSFIYTEPQTCTGLWLALEDATILNGCLWAIPGSHKNGLVRKFFRDEDGVKFDRPSPS 211

Query: 181 YDQKDFVPIEVKSGSLVVIHGDLIHQSFENLSPKSRHAYSLHVVDTDGCKWAPEN 235
           YDQKDFVPIEVK+GSLVVIHG+LIHQSFEN S KSRHAYSLHVVDT GCKWA EN
Sbjct: 212 YDQKDFVPIEVKAGSLVVIHGNLIHQSFENQSTKSRHAYSLHVVDTVGCKWAAEN 266