Miyakogusa Predicted Gene

Lj4g3v0631000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0631000.1 Non Characterized Hit- tr|B9SJ55|B9SJ55_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.05,0.00000000000002,Linker_histone,Histone H1/H5; "Winged helix"
DNA-binding domain,NULL; no description,Winged helix-tu,CUFF.47727.1
         (357 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g084700.2 | linker histone H1 and h5 family protein | HC |...    79   6e-15
Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |...    79   7e-15
Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |...    65   1e-10
Medtr7g106530.1 | linker histone H1 and h5 family protein | LC |...    64   2e-10
Medtr4g019680.1 | linker histone H1 and h5 family protein | LC |...    61   1e-09

>Medtr4g084700.2 | linker histone H1 and h5 family protein | HC |
          chr4:33010895-33015140 | 20130731
          Length = 467

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 1  MIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLCEVREI 52
          MI +AIT+L ++ GSTEEAISEFV+++YEDLPWAH ++L  HL++LCE  EI
Sbjct: 1  MINKAITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCEAGEI 52


>Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |
           chr4:33010895-33015140 | 20130731
          Length = 548

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 1   MIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLCEVREI 52
           MI +AIT+L ++ GSTEEAISEFV+++YEDLPWAH ++L  HL++LCE  EI
Sbjct: 82  MINKAITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCEAGEI 133


>Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |
           chr1:18841060-18840386 | 20130731
          Length = 197

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 1   MIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLCEVREIASTK 56
           MI +AI +LN+  GSTE AISEF+R++YEDLP AHA +L   LRKLC   E+  TK
Sbjct: 65  MINKAIKELNDECGSTEAAISEFIRREYEDLPTAHATILQLKLRKLCMNGELVCTK 120


>Medtr7g106530.1 | linker histone H1 and h5 family protein | LC |
           chr7:43367624-43366923 | 20130731
          Length = 144

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 1   MIRRAITDLNERDGSTEEAISEFVRKKYE-DLPWAHARLLGNHLRKLCEVREIAST 55
           MI+RA+ +L+E+ G TEEAISEF+R++Y+ DLP+ HA +L  HL+KLC   E+  T
Sbjct: 51  MIKRAMKELDEKSGLTEEAISEFIRRQYDKDLPFDHASILHIHLQKLCMSGELLCT 106


>Medtr4g019680.1 | linker histone H1 and h5 family protein | LC |
           chr4:6201306-6200762 | 20130731
          Length = 147

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%), Gaps = 1/56 (1%)

Query: 1   MIRRAITDLNERDGSTEEAISEFVRKKYE-DLPWAHARLLGNHLRKLCEVREIAST 55
           MI+RA+ +LNE+ GSTEE IS+F+R++Y+ DLP+ HA +L + L+K C   E+  T
Sbjct: 51  MIKRAVKELNEKSGSTEEDISKFIRREYDNDLPFDHAFILHSRLKKFCMSGELLCT 106