Miyakogusa Predicted Gene

Lj4g3v0630990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0630990.1 Non Characterized Hit- tr|B9SJ55|B9SJ55_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,34.51,0.000000000000002,Domain in histone families,Histone H1/H5;
Linker_histone,Histone H1/H5; "Winged helix" DNA-binding
d,CUFF.47726.1
         (433 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |...   126   3e-29
Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |...    86   9e-17
Medtr7g106530.1 | linker histone H1 and h5 family protein | LC |...    82   9e-16
Medtr4g019680.1 | linker histone H1 and h5 family protein | LC |...    81   2e-15
Medtr4g084700.2 | linker histone H1 and h5 family protein | HC |...    79   8e-15
Medtr6g079520.1 | linker histone H1 and h5 family protein | HC |...    55   2e-07
Medtr8g106980.1 | linker histone H1 and h5 family protein | HC |...    53   6e-07
Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |...    51   2e-06
Medtr5g078330.1 | linker histone H1 and h5 family protein | HC |...    50   4e-06

>Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |
           chr4:33010895-33015140 | 20130731
          Length = 548

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 84/108 (77%), Gaps = 3/108 (2%)

Query: 23  DTRITELVMDSMLSRLTQTDPPVSPSLIN--SADVGRQIQEVVSSFHTPAHPPYALMIRR 80
           D+ +++L  DS+LS+LTQ +P ++PS +   S+ +  ++Q++  SF TP HPPYALMI +
Sbjct: 27  DSAMSQL-RDSLLSQLTQLNPSLTPSTLTDRSSFIQSRLQQLFHSFRTPTHPPYALMINK 85

Query: 81  AITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLCEVREI 128
           AIT+L ++ GSTEEAISEFV+++YEDLPWAH ++L  HL++LCE  EI
Sbjct: 86  AITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCEAGEI 133


>Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |
           chr1:18841060-18840386 | 20130731
          Length = 197

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 52  SADVGRQIQEVVSSFHTPA-HPPYALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWA 110
           S+ +  ++ ++ + FHTP  HPPY  MI +AI +LN+  GSTE AISEF+R++YEDLP A
Sbjct: 39  SSFLDERLPQLFNDFHTPDDHPPYHWMINKAIKELNDECGSTEAAISEFIRREYEDLPTA 98

Query: 111 HARLLGNHLRKLCEVREIASTK 132
           HA +L   LRKLC   E+  TK
Sbjct: 99  HATILQLKLRKLCMNGELVCTK 120


>Medtr7g106530.1 | linker histone H1 and h5 family protein | LC |
           chr7:43367624-43366923 | 20130731
          Length = 144

 Score = 82.4 bits (202), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 15/109 (13%)

Query: 31  MDSMLSRLTQTDP------PVSPSLINSADVGRQIQEVVSSFHTPAHPPYALMIRRAITD 84
           M S+L R+   +P      P+  SL+N       +Q +   F +P HPPY  MI+RA+ +
Sbjct: 7   MKSLLLRIAALEPSYTIHCPLLSSLVNHC-----LQRI---FKSPTHPPYDSMIKRAMKE 58

Query: 85  LNERDGSTEEAISEFVRKKYE-DLPWAHARLLGNHLRKLCEVREIASTK 132
           L+E+ G TEEAISEF+R++Y+ DLP+ HA +L  HL+KLC   E+  T+
Sbjct: 59  LDEKSGLTEEAISEFIRRQYDKDLPFDHASILHIHLQKLCMSGELLCTE 107


>Medtr4g019680.1 | linker histone H1 and h5 family protein | LC |
           chr4:6201306-6200762 | 20130731
          Length = 147

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 15/108 (13%)

Query: 31  MDSMLSRLTQTDP------PVSPSLINSADVGRQIQEVVSSFHTPAHPPYALMIRRAITD 84
           M S+L R+   +P      P   SL+N          ++  F  P HPPY  MI+RA+ +
Sbjct: 7   MKSLLLRIASLEPSSTIHCPFLSSLLNKC--------LLRVFKFPTHPPYDSMIKRAVKE 58

Query: 85  LNERDGSTEEAISEFVRKKYE-DLPWAHARLLGNHLRKLCEVREIAST 131
           LNE+ GSTEE IS+F+R++Y+ DLP+ HA +L + L+K C   E+  T
Sbjct: 59  LNEKSGSTEEDISKFIRREYDNDLPFDHAFILHSRLKKFCMSGELLCT 106


>Medtr4g084700.2 | linker histone H1 and h5 family protein | HC |
           chr4:33010895-33015140 | 20130731
          Length = 467

 Score = 79.3 bits (194), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 77  MIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKLCEVREI 128
           MI +AIT+L ++ GSTEEAISEFV+++YEDLPWAH ++L  HL++LCE  EI
Sbjct: 1   MINKAITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCEAGEI 52


>Medtr6g079520.1 | linker histone H1 and h5 family protein | HC |
           chr6:29989072-29995626 | 20130731
          Length = 553

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 6/62 (9%)

Query: 64  SSFHTPAHPPYALMIRRAITDLNERDGSTEEAISEFVRKKYED-LPW--AHARLLGNHLR 120
           SSF+   HPPYA MI  AI  L E+DGS++ AIS+++   Y D LP   +H  LL +HL+
Sbjct: 38  SSFN---HPPYAEMIYTAIEALKEKDGSSKRAISKYIEHVYRDQLPNSESHQNLLTHHLK 94

Query: 121 KL 122
           +L
Sbjct: 95  RL 96


>Medtr8g106980.1 | linker histone H1 and h5 family protein | HC |
           chr8:45185546-45188667 | 20130731
          Length = 422

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 65  SFHTPAHPPYALMIRRAITDLNERDGSTEEAISEFVRKKYED-LPWAHARLLGNHLRKL 122
           + H   HPPYA MI +AI  L E+DGS++ AI +++   Y+  LP  H+ LL  HL  L
Sbjct: 21  THHVAPHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPEHSTLLTQHLNHL 79


>Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |
           chr1:35890649-35889690 | 20130731
          Length = 184

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 70  AHPPYALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRK 121
           +HP YA MI  AI  L ER GS++ AI++F+ +K++DL     +L+  HL+K
Sbjct: 22  SHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKK 73


>Medtr5g078330.1 | linker histone H1 and h5 family protein | HC |
           chr5:33480032-33481579 | 20130731
          Length = 204

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 72  PPYALMIRRAITDLNERDGSTEEAISEFVRKKYEDLPWAHARLLGNHLRKL 122
           PPY  MI +A+  LNE +GS + +IS ++   Y +LP  H+ +L NHL ++
Sbjct: 13  PPYPEMIMKALEALNEPNGSNKSSISNYIESIYGELPEGHSIVLANHLNQM 63