Miyakogusa Predicted Gene

Lj4g3v0599890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0599890.1 tr|C1FI28|C1FI28_MICSR Transcription initiation
factor IIE, alpha subunit OS=Micromonas sp. (strain
,33.5,4e-19,TFIIE_alpha,TFIIEalpha/SarR/Rpc3 HTH domain;
coiled-coil,NULL; Zinc beta-ribbon,NULL; HTH_TFE_IIE,Tr,CUFF.47640.1
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077000.1 | transcription initiation factor IIE, putative ...   326   1e-89

>Medtr8g077000.1 | transcription initiation factor IIE, putative |
           HC | chr8:32692655-32682881 | 20130731
          Length = 479

 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 174/223 (78%), Positives = 187/223 (83%), Gaps = 18/223 (8%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGGSDNRGIAVVVLYALTRRQWVREEDLAKD 60
           MIEPYNKLVKLAARAFYDD TSKGD+QPK+G SDNRGI VV+L ALTR+QWVREEDLAKD
Sbjct: 1   MIEPYNKLVKLAARAFYDDPTSKGDDQPKTGRSDNRGIDVVILDALTRKQWVREEDLAKD 60

Query: 61  LKLHTKQLRRTLRFFEEEKIITRDHRRETAKGAKIYSAAVAATADSQQTGKEGEEKVKLH 120
           LKL+TK+LRR L+ F EEKIITRD R+ETAKGAKIYSAAVAATAD+ + GK GEEKVKLH
Sbjct: 61  LKLNTKELRRRLQSFAEEKIITRDQRKETAKGAKIYSAAVAATADATK-GKMGEEKVKLH 119

Query: 121 THSYCCLDYAQIYDVTRYRLHRMKHKLKDELDNKNTLQEYICPNCAKR------------ 168
           THSYCCLDYAQIYDV RYRLH MKHKLKDEL+NKNT+QEYIC N                
Sbjct: 120 THSYCCLDYAQIYDVVRYRLHHMKHKLKDELENKNTVQEYICTNYILFVWMYFCFIILGN 179

Query: 169 -----YNALDALRLISFEDEDFHCESCNGKLEVESDKIAAQEG 206
                YNALDALRLISFEDEDFHCE CNGKLEVESDK+AAQEG
Sbjct: 180 FNYFIYNALDALRLISFEDEDFHCEHCNGKLEVESDKLAAQEG 222