Miyakogusa Predicted Gene

Lj4g3v0598860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0598860.1 tr|B9HS12|B9HS12_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_821232 PE=4
SV=1,35.2,8e-18,seg,NULL,CUFF.47635.1
         (287 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g085990.1 | hypothetical protein | HC | chr4:33627066-3363...   331   5e-91

>Medtr4g085990.1 | hypothetical protein | HC |
           chr4:33627066-33631340 | 20130731
          Length = 284

 Score =  331 bits (848), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 176/281 (62%), Positives = 205/281 (72%), Gaps = 9/281 (3%)

Query: 1   MEEDLRLHRDLQSPPVLSDPELTRXXXXXXXXXITADKEFSRNCTDSSFPDESARWTDQQ 60
           ME+DL L  +L SP   SD ELTR          T D   + +   + F D+S RWTDQ 
Sbjct: 1   MEQDLPLRHNLHSPTFPSDLELTRSASFSDSSATTTD---NTSGDAAPFQDQSRRWTDQL 57

Query: 61  HSLYLSSLEASFVNELHRSINLRGWSFQNNTDGAYKHRTLQKSVNMPKQSLALQDGCQKK 120
           H  YLSSLEASFVNELHRSI+LRGWSF N  D AYK +TLQ + +MP+QSLALQDGCQKK
Sbjct: 58  HKSYLSSLEASFVNELHRSIHLRGWSFHNRADEAYKCKTLQNTPSMPRQSLALQDGCQKK 117

Query: 121 TKLERIAPMLESTADSHVHAGSQLGLIPIDRACSLKEHHTYDHDLPCDEEIHAKGSLPFT 180
            KLE+IA MLES ADSHV AGS+LG+  +D+ACSL+E +TYDH L C EEIHA GS  F 
Sbjct: 118 IKLEKIATMLESAADSHVVAGSELGVATVDKACSLREPNTYDHGLLCKEEIHASGSSAFA 177

Query: 181 NKSPRSSAKKQCLFPSFHAESSCSSAEVTDQNFKDEVASSSTMPMAKRLKTAAADGSSRD 240
           N+S RS  +KQC   +FHAES CS+ EV+DQNFKDEVASSS+MPMAKRLKT AADGSS D
Sbjct: 178 NRSARSCVEKQC---TFHAESDCSTTEVSDQNFKDEVASSSSMPMAKRLKTDAADGSSTD 234

Query: 241 QVVPFEKFHTSD---VSNATSEKKEHELQSELRASIHIPKS 278
           QVVPF KF T+D   VSN+T E + HEL S+L  S  +PKS
Sbjct: 235 QVVPFGKFQTTDVSTVSNSTPENEGHELLSQLPESFRVPKS 275