Miyakogusa Predicted Gene
- Lj4g3v0575400.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0575400.2 Non Characterized Hit- tr|A9NWA0|A9NWA0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,24.44,0.0000006,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait;
RNA-binding,CUFF.47618.2
(321 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 528 e-150
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 391 e-109
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 386 e-107
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 354 7e-98
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 353 1e-97
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 338 5e-93
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 267 1e-71
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 258 4e-69
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 242 3e-64
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 242 3e-64
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 241 7e-64
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 134 1e-31
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 134 2e-31
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 134 2e-31
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 122 4e-28
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 116 3e-26
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 102 7e-22
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 100 2e-21
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 88 1e-17
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 87 2e-17
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 87 2e-17
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 87 3e-17
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 86 5e-17
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 86 7e-17
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 84 2e-16
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 5e-16
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 82 9e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 77 2e-14
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 4e-14
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 4e-14
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 75 1e-13
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 68 1e-11
Medtr3g079200.1 | zinc finger CCCH domain protein | HC | chr3:35... 64 2e-10
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 63 4e-10
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 4e-10
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 63 4e-10
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 4e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 62 9e-10
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 59 6e-09
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 59 7e-09
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 59 7e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 57 2e-08
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 57 2e-08
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 7e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 7e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr8g070490.1 | RNA recognition motif (RRM) containing protein... 54 2e-07
Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like pro... 54 2e-07
Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like pro... 54 2e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 51 1e-06
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 51 1e-06
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 51 1e-06
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 51 1e-06
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 51 1e-06
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 51 2e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 50 3e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 50 3e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 48 1e-05
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 261/328 (79%), Positives = 277/328 (84%), Gaps = 7/328 (2%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDE ++HNCFAHTGEV SAKVIRNKQTGQSEGYGFVEFY+RA AEKVLQNFNGTMMPNTD
Sbjct: 127 MDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTD 186
Query: 61 QAFRLNWASFSA----GERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKV 116
QAFRLNWA+FSA GERRS ATSDLS+FVGDLAIDVTDAMLQETF S+FSSIKGAKV
Sbjct: 187 QAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKV 246
Query: 117 VIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXX 176
VIDSNTGRSKGYGFVRFGDE+ERTRAMTEMNGV+CS+RPMRVGVATPKKTYG
Sbjct: 247 VIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQ 306
Query: 177 XAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP 236
V+ GG SNGA+AQGSQS+GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV+SVKIP
Sbjct: 307 AVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIP 366
Query: 237 VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD---SNXXXXXX 293
VGKGCGFVQ ADRKNAEEAI LNGTVIGKQTVRLSWGRSPGNKH R+D
Sbjct: 367 VGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHGRNDSNGYGGHGYGG 426
Query: 294 XXXXXXXXXARQNQDMGMHPTAAIQGAS 321
ARQNQD+ M P AA+QGAS
Sbjct: 427 HGYGSNGYAARQNQDIAMQPAAAVQGAS 454
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/285 (66%), Positives = 227/285 (79%), Gaps = 16/285 (5%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDE+Y+H CFA TGE+ S KVIRNK +G SEGYGF EF+S ATAEKVLQN+ G +MPN D
Sbjct: 108 MDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNAD 167
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
QAFRLNWA+FS G++ S+ T DLSIFVGDLA DVTD++L ETF S + S+K AKVV D+
Sbjct: 168 QAFRLNWATFSTGDKGSDNVT-DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDA 226
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
NTGRSKGYGFVRFGDE+ER++AMT+MNGV+CS+RPMR+G ATP+K+ G
Sbjct: 227 NTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ---------- 276
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG 240
GG SNG SQS+ DS NTTIFVGGLDS+++DEDL+Q F Q+G++ SVKIPVGKG
Sbjct: 277 -PGGQ-SNGT---SSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKG 331
Query: 241 CGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD 285
CGFVQFA+R NAEEA+ LNGT+IGKQTVRLSWGR+P K +R D
Sbjct: 332 CGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLD 376
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/285 (65%), Positives = 218/285 (76%), Gaps = 15/285 (5%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY+H CFA TGE+ S KVIRNKQT Q+EGYGFVEF S TAEKVLQ + G +MPNT+
Sbjct: 104 MDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTE 163
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q FRLNWA+FS G+ + DLSIFVGDLA DVTD ML ETF ++ S+K AKVV D+
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
NTGRSKGYGFVRFGD+ ER++A+ EMNGVFCS+R MR+G ATP+K+ G
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQ--------- 274
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG 240
GG SNG SQSD DS NTTIFVGGLD + EDLRQPF Q+G++VSVKIPVGKG
Sbjct: 275 --GGQ-SNGTP---SQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKG 328
Query: 241 CGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD 285
CGFVQFA+R NAEEA+ LNGT +GKQTVRLSWGR+P NK +RS+
Sbjct: 329 CGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSE 373
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 354 bits (908), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 175/286 (61%), Positives = 208/286 (72%), Gaps = 15/286 (5%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE+VLQ +NGT+MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QAFRLNWASFSAGERRS-EAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
Q +RLNWA+FSAGER S + D +IFVGDLA DVTD +LQETF +R++S+KGAKVVID
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAV 179
TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNP------------- 237
Query: 180 VLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK 239
A P G QS+ D NNTTIFVG LD +++D+ LRQ F Q+G++V VKIP GK
Sbjct: 238 -AATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGK 296
Query: 240 GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD 285
CGFVQF+DR AEEAI LNGT++G Q VRLSWGR+P NK + D
Sbjct: 297 RCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQD 342
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 175/287 (60%), Positives = 212/287 (73%), Gaps = 14/287 (4%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY++NCF+HTGEV S KVIRNKQT QSEGYGF+EF SRA AE+VLQ FNGT+MPN
Sbjct: 85 MDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTFNGTIMPNGG 144
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q FRLNWA+FS+GE+R + + D +IFVGDLA DV+D L E F +R++S+KGAKVVID
Sbjct: 145 QNFRLNWATFSSGEKRHDD-SPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDR 203
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
TGR+KGYGFVRF DE+E+ RAMTEM GV CS RPMR+G A+ K G
Sbjct: 204 TTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPAS-NKNLGTQTSKASYQ--- 259
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG 240
+P GA Q++ D NNTTIFVG LD +++DE L+Q F Q+G++V VKIP GK
Sbjct: 260 ----NPQGGA-----QNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKR 310
Query: 241 CGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDSN 287
CGFVQFADR +AEEA+ LNGT++G Q VRLSWGRSP NK + D N
Sbjct: 311 CGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPN 357
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 338 bits (866), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 162/281 (57%), Positives = 202/281 (71%), Gaps = 7/281 (2%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+DENY+ +CF+HTGEV+S K+IRNK TGQ EGYGF+EF S + AE+VLQ +NGT MP T+
Sbjct: 26 VDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTE 85
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q FRLNWASF GERR +A D SIFVGDLA DVTD +LQETF + + S++GAKVV D
Sbjct: 86 QTFRLNWASFGIGERRPDAG-PDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDP 144
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
NTGRSKGYGFV+F DE+ER RAM+EMNGV+CS RPMR+ ATPKKT G
Sbjct: 145 NTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAA 204
Query: 181 LAGG---HPSNG---AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK 234
+P A + D NNTTI+VG LD ++S+E+L+Q FLQFG++VSVK
Sbjct: 205 APVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVK 264
Query: 235 IPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGR 275
+ GK CGFVQF R +AEEAI + G ++G+Q +R+SWGR
Sbjct: 265 VHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGR 305
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/211 (62%), Positives = 159/211 (75%), Gaps = 16/211 (7%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDE+Y+H CFA TGE+ S KVIRNK +G SEGYGF EF+S ATAEKVLQN+ G +MPN D
Sbjct: 108 MDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNAD 167
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
QAFRLNWA+FS G++ S+ T DLSIFVGDLA DVTD++L ETF S + S+K AKVV D+
Sbjct: 168 QAFRLNWATFSTGDKGSDNVT-DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDA 226
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
NTGRSKGYGFVRFGDE+ER++AMT+MNGV+CS+RPMR+G ATP+K+ G
Sbjct: 227 NTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ---------- 276
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGL 211
GG SNG SQS+ DS NTT+ L
Sbjct: 277 -PGGQ-SNGT---SSQSEADSTNTTVSFSAL 302
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/206 (62%), Positives = 150/206 (72%), Gaps = 15/206 (7%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY+H CFA TGE+ S KVIRNKQT Q+EGYGFVEF S TAEKVLQ + G +MPNT+
Sbjct: 104 MDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTE 163
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q FRLNWA+FS G+ + DLSIFVGDLA DVTD ML ETF ++ S+K AKVV D+
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
NTGRSKGYGFVRFGD+ ER++A+ EMNGVFCS+R MR+G ATP+K+ G
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQ--------- 274
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTI 206
GG SNG SQSD DS NTT+
Sbjct: 275 --GGQ-SNGT---PSQSDTDSTNTTV 294
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 37/202 (18%)
Query: 79 AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 138
+A + +++VGDL + + L F S I KV+ + T +++GYGFV F
Sbjct: 88 SAADNKTLWVGDLHHWMDENYLHRCFAST-GEIFSIKVIRNKQTCQTEGYGFVEFTSHGT 146
Query: 139 RTRAMTEMNGVFCSN--RPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQ 196
+ + G+ N +P R+ AT G H + V
Sbjct: 147 AEKVLQTYAGMLMPNTEQPFRLNWAT-----------------FSTGDHKRSDNVP---- 185
Query: 197 SDGDSNNTTIFVGGLDSDISDEDLRQPFL-QFGDVVSVKIPV------GKGCGFVQFADR 249
+ +IFVG L +D++D L + F ++ V + K+ KG GFV+F D
Sbjct: 186 ------DLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDD 239
Query: 250 KNAEEAIHALNGTVIGKQTVRL 271
+A++ +NG + +R+
Sbjct: 240 GERSKALNEMNGVFCSSRAMRI 261
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 134/165 (81%), Gaps = 1/165 (0%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE+VLQ +NGT+MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QAFRLNWASFSAGERRSEAAT-SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
Q +RLNWA+FSAGER S D +IFVGDLA DVTD +LQETF +R++S+KGAKVVID
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 164
TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 134/165 (81%), Gaps = 1/165 (0%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE+VLQ +NGT+MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QAFRLNWASFSAGERRSEAAT-SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
Q +RLNWA+FSAGER S D +IFVGDLA DVTD +LQETF +R++S+KGAKVVID
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 164
TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 241 bits (615), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 134/165 (81%), Gaps = 1/165 (0%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
MDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE+VLQ +NGT+MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QAFRLNWASFSAGERRSEAAT-SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
Q +RLNWA+FSAGER S D +IFVGDLA DVTD +LQETF +R++S+KGAKVVID
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 164
TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 138/275 (50%), Gaps = 19/275 (6%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F G + K+IR +++ YGFV+++ RA+A + +G + QA ++NWA
Sbjct: 64 FQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTLHGRQL--YGQALKVNWA- 116
Query: 70 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
++ R E + ++FVGDL+ +VTDA L F S +++ A+V+ D TGRSKGYG
Sbjct: 117 YANSSR--EDTSGHFNVFVGDLSPEVTDATLFACF-SVYTTCSDARVMWDHKTGRSKGYG 173
Query: 130 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK--TYGXXXXXXXXXAVVLAGGHPS 187
FV F D + A+ +M G + NR +R AT + AVVL G
Sbjct: 174 FVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSD 233
Query: 188 NGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPFLQFGDVV--SVKIPVGKGCG 242
G S D NN TT++VG L D++ +L F G V V++ GKG G
Sbjct: 234 GG--QDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFG 291
Query: 243 FVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 277
FV++ + A AI NG + +T++ SWG P
Sbjct: 292 FVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 326
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 138/275 (50%), Gaps = 19/275 (6%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F G + K+IR +++ YGFV+++ RA+A + +G + QA ++NWA
Sbjct: 80 FQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTLHGRQL--YGQALKVNWA- 132
Query: 70 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
++ R E + ++FVGDL+ +VTDA L F S +++ A+V+ D TGRSKGYG
Sbjct: 133 YANSSR--EDTSGHFNVFVGDLSPEVTDATLFACF-SVYTTCSDARVMWDHKTGRSKGYG 189
Query: 130 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK--TYGXXXXXXXXXAVVLAGGHPS 187
FV F D + A+ +M G + NR +R AT + AVVL G
Sbjct: 190 FVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSD 249
Query: 188 NGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPFLQFGDVV--SVKIPVGKGCG 242
G S D NN TT++VG L D++ +L F G V V++ GKG G
Sbjct: 250 GG--QDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFG 307
Query: 243 FVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 277
FV++ + A AI NG + +T++ SWG P
Sbjct: 308 FVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 342
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 138/275 (50%), Gaps = 19/275 (6%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F G + K+IR +++ YGFV+++ RA+A + +G + QA ++NWA
Sbjct: 80 FQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTLHGRQL--YGQALKVNWA- 132
Query: 70 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
++ R E + ++FVGDL+ +VTDA L F S +++ A+V+ D TGRSKGYG
Sbjct: 133 YANSSR--EDTSGHFNVFVGDLSPEVTDATLFACF-SVYTTCSDARVMWDHKTGRSKGYG 189
Query: 130 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK--TYGXXXXXXXXXAVVLAGGHPS 187
FV F D + A+ +M G + NR +R AT + AVVL G
Sbjct: 190 FVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSD 249
Query: 188 NGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPFLQFGDVV--SVKIPVGKGCG 242
G S D NN TT++VG L D++ +L F G V V++ GKG G
Sbjct: 250 GG--QDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFG 307
Query: 243 FVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 277
FV++ + A AI NG + +T++ SWG P
Sbjct: 308 FVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 342
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 14/281 (4%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+ E + F+ G + K+IR +++ YGFV+++ R++A + NG +
Sbjct: 57 VSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTLNGRNI--FG 110
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
Q+ ++NWA ++ G+R E + IFVGDL+ +VTDA L F S +SS A+V+ D
Sbjct: 111 QSIKVNWA-YTRGQR--EDTSGHFHIFVGDLSPEVTDATLYACF-SAYSSCSDARVMWDQ 166
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
TGRS+G+GFV F ++ E A+ ++ G + +R +R AT +VV
Sbjct: 167 KTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVV 226
Query: 181 LAGGHPSNGAVAQGSQSDGDSNN--TTIFVGGLDSDISDEDLRQPF--LQFGDVVSVKIP 236
S A S + N TT++VG L +++ DL F L G + V++
Sbjct: 227 ELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQ 286
Query: 237 VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 277
KG GFV+++ A AI N + + ++ SWG P
Sbjct: 287 RDKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSKP 327
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 142/282 (50%), Gaps = 19/282 (6%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E + FA TG V K+ R +++ YGF+ ++ R +A + NG + Q
Sbjct: 75 EPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLNGRHL--FGQP 128
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
++NWA +++G+R E + +IFVGDL+ +VTDA L F S + S A+V+ D T
Sbjct: 129 IKVNWA-YASGQR--EDTSGHYNIFVGDLSPEVTDATLFACF-SVYQSCSDARVMWDQKT 184
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV-L 181
GRS+G+GFV F + + A+ ++ G + +R +R AT +VV L
Sbjct: 185 GRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVEL 244
Query: 182 AGGHPSNGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPF--LQFGDVVSVKIP 236
G +G + S +D NN TT++VG L S+ + DL + F L G + V++
Sbjct: 245 TNGSSEDG--KEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQ 302
Query: 237 VGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 277
KG GFV+++ A AI N + + + ++ SWG P
Sbjct: 303 RDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKP 344
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 29/290 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D +H+ F+ G ++S KV + +GQS+GYGFV+F + A+K ++ NG ++ N
Sbjct: 133 IDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLL-NDK 190
Query: 61 QAFRLNWASFSAGERRSEAATSDLS-IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
Q + + ER S + + +FV +L+ TD L++TFG F +I A V+ D
Sbjct: 191 QVYVGPF--LRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGE-FGTITSAVVMRD 247
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAV 179
+ G+SK +GFV F ++ RA+ +NG ++ VG A K
Sbjct: 248 GD-GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSERE----------- 295
Query: 180 VLAGGHPSNGAVAQGSQSDGDS-NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI--- 235
H Q + D ++V LD I+DE L++ F +G + S K+
Sbjct: 296 -----HELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD 350
Query: 236 P--VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 283
P V +G GFV F+ + A A+ +NG ++ + + ++ + ++ R
Sbjct: 351 PNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRAR 400
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 126/265 (47%), Gaps = 42/265 (15%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+++ F G+VVS +V R+ T +S GYG+V + + A + L N T P ++ R+
Sbjct: 50 LYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFT--PLNNRPIRI 107
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
++ R+S +IF+ +L + L +TF S F +I KV +D +G+S
Sbjct: 108 MYSHRDPSIRKSGQG----NIFIKNLDKAIDHKALHDTFSS-FGNILSCKVAVDG-SGQS 161
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
KGYGFV+F E +A+ ++NG+ +++ + VG K
Sbjct: 162 KGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRK--------------------- 200
Query: 186 PSNGAVAQGSQSDGD-SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVS-VKIPVGKG--- 240
Q +S GD + +FV L +D++L++ F +FG + S V + G G
Sbjct: 201 -------QERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSK 253
Query: 241 C-GFVQFADRKNAEEAIHALNGTVI 264
C GFV F +A A+ ALNG I
Sbjct: 254 CFGFVNFESTDDAARAVEALNGKKI 278
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 37/190 (19%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++VGDL ++VTD+ L + F ++ + +V D T RS GYG+V + + + RA+
Sbjct: 35 SLYVGDLDMNVTDSQLYDLF-NQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
+N +NRP+R ++ + PS QG+
Sbjct: 94 VLNFTPLNNRPIR---------------------IMYSHRDPSIRKSGQGN--------- 123
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 259
IF+ LD I + L F FG+++S K+ V KG GFVQF + A++AI L
Sbjct: 124 -IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 183 NGMLLNDKQV 192
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 137/277 (49%), Gaps = 40/277 (14%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+ ++ +H+ F+ + S ++ R+ +G+S YG+V F S A + ++ N + +
Sbjct: 21 LSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVKNHSTL--NG 78
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+A R+ W+ R+S ++FV +LA + ++ L++ F +F +I +KVV+ S
Sbjct: 79 KAIRVMWSRRDPDARKSCIG----NVFVKNLAESIDNSGLEDMF-KKFGNILSSKVVM-S 132
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
G+SKGYGFV+F E A+ +NG ++ + VG K
Sbjct: 133 EDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKK---------------- 176
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP---- 236
+ ++ G D+ T +++ LD DIS+ LR+ F FG ++S+ +
Sbjct: 177 -------SDRISSGP----DTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSN 225
Query: 237 -VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 272
+ KG GFV F + ++A+ A+ +NG +G + + ++
Sbjct: 226 GMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVA 262
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 33/284 (11%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D + + + F G ++S+KV+ + + G+S+GYGFV+F + +A ++ NG ++ D
Sbjct: 109 IDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLV--GD 165
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+ + + S T ++++ +L +D+++ +L+E F S F I V DS
Sbjct: 166 KQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSS-FGKIISLAVAKDS 224
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK----KTYGXXXXXXXX 176
N G SKG+GFV F + + RAM MNG+ ++ + V A K +
Sbjct: 225 N-GMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRK 283
Query: 177 XAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP 236
V+ G + I+V +D ++SDE LR F G + S KI
Sbjct: 284 EQVLKYKG-------------------SNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIM 324
Query: 237 -----VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGR 275
+ KG GFV F+ + A +A+++ +G + + + +S +
Sbjct: 325 RDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNT- 59
+ E + F+ G+++S V ++ G S+G+GFV F + A++ ++ NG + +
Sbjct: 200 ISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKI 258
Query: 60 -------DQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAMLQETFGSRFSS 110
+A R E+R E +I+V ++ +V+D L++ F S +
Sbjct: 259 LYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHF-SVCGT 317
Query: 111 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
I AK++ D + G SKG+GFV F E +A+ +G +P+ V +A K+
Sbjct: 318 ITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKE 371
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 40/261 (15%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+++ F G+VVS ++ R+ + QS GYG+V F + A K + N T P ++ R+
Sbjct: 40 LYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFT--PLNNKPIRI 97
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
++ R+S AA +IF+ +L + L +TF S F +I K+ +D+ +G S
Sbjct: 98 MYSHRDPSVRKSGAA----NIFIKNLDRAIDHKALYDTF-SIFGNILSCKIAMDA-SGLS 151
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
KGYGFV+F +E A+ ++NG+ +++P+ V GH
Sbjct: 152 KGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV-------------------------GH 186
Query: 186 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKG 240
+ S+ NN ++V L ++D+DL+ F ++G + S + K
Sbjct: 187 FQRKQDRDNALSNAKFNN--VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKC 244
Query: 241 CGFVQFADRKNAEEAIHALNG 261
GFV F + A EA+ ALNG
Sbjct: 245 FGFVNFENADAAAEAVEALNG 265
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 37/190 (19%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S++VGDL DVTD+ L + F ++ + ++ D + +S GYG+V F + ++ +AM
Sbjct: 25 SLYVGDLDHDVTDSQLYDLF-NQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
+N +N+P+R ++ + PS + G +N
Sbjct: 84 VLNFTPLNNKPIR---------------------IMYSHRDPS-------VRKSGAAN-- 113
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFVQFADRKNAEEAIHAL 259
IF+ LD I + L F FG+++S KI + KG GFVQF + ++A+ AI L
Sbjct: 114 -IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 260 NGTVIGKQTV 269
NG ++ + V
Sbjct: 173 NGMLLNDKPV 182
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD----Q 61
+ N F G + SA V+R+ G+S+ +GFV F + A + ++ NG + + +
Sbjct: 219 LKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGK 277
Query: 62 AFRLNWASFSAGERRSEAATSDLSIFVG------DLAIDVTDAMLQETFGSRFSSIKGAK 115
A + ER ++ + F G +L VTD L E F S F ++ K
Sbjct: 278 ALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELF-SEFGTVTSCK 336
Query: 116 VVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
++ D G S+G GFV F E TRA+ EMNG + +P+ V A K+
Sbjct: 337 ILRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKE 385
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 41/281 (14%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
++E + + F+ +VVS +V R++ S GY +V F + A + N T P +
Sbjct: 41 VNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFT--PLNE 98
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+ R+ ++ R+S + ++F+ +L + L +TF + F + KV +D
Sbjct: 99 KPIRIMFSQRDPSVRKSGSG----NVFIKNLDTSIDHKALHDTFAA-FGPVLSCKVALDG 153
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
N G+SKGYGFV+F +E A+ +++G+ +++ + VG +
Sbjct: 154 N-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQ--------------- 197
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVS---VKIPV 237
+ ++++G T ++V + +DEDL+Q F FG + S +K
Sbjct: 198 ------------ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDAN 245
Query: 238 GKG-C-GFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 276
GK C GFV F +A A+ LNGT I V L GR+
Sbjct: 246 GKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKV-LFVGRA 285
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 19/177 (10%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQ 61
DE+ + F G + SA V+++ G+S +GFV F S +A ++ NGT + N D+
Sbjct: 222 DED-LKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKLNGTAI-NDDK 278
Query: 62 AFRLNWASFSAGERRSEAATS-------------DLSIFVGDLAIDVTDAMLQETFGSRF 108
+ A A ER +E ++++ +L D + L++ F S F
Sbjct: 279 VLFVGRAQRKA-ERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLF-SEF 336
Query: 109 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
++ +V++DS+ G SKG GFV F E +A+ EMNG +P+ V VA K+
Sbjct: 337 GTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKE 392
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 41/281 (14%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
++E + + F+ +VVS +V R++ S GY +V F + A + N T P +
Sbjct: 41 VNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFT--PLNE 98
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+ R+ ++ R+S + ++F+ +L + L +TF + F + KV +D
Sbjct: 99 KPIRIMFSQRDPSVRKSGSG----NVFIKNLDTSIDHKALHDTFAA-FGPVLSCKVALDG 153
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
N G+SKGYGFV+F +E A+ +++G+ +++ + VG +
Sbjct: 154 N-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQ--------------- 197
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVS---VKIPV 237
+ ++++G T ++V + +DEDL+Q F FG + S +K
Sbjct: 198 ------------ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDAN 245
Query: 238 GKG-C-GFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 276
GK C GFV F +A A+ LNGT I V L GR+
Sbjct: 246 GKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKV-LFVGRA 285
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 19/177 (10%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQ 61
DE+ + F G + SA V+++ G+S +GFV F S +A ++ NGT + N D+
Sbjct: 222 DED-LKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKLNGTAI-NDDK 278
Query: 62 AFRLNWASFSAGERRSEAATS-------------DLSIFVGDLAIDVTDAMLQETFGSRF 108
+ A A ER +E ++++ +L D + L++ F S F
Sbjct: 279 VLFVGRAQRKA-ERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLF-SEF 336
Query: 109 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
++ +V++DS+ G SKG GFV F E +A+ EMNG +P+ V VA K+
Sbjct: 337 GTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKE 392
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 128/269 (47%), Gaps = 40/269 (14%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
++++ +++ F G+VVS +V R+ T +S GYG+V F + A + L N T P +
Sbjct: 43 VNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFT--PMNN 100
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
++ R+ ++ R+S A +IF+ +L + L +TF S F I K+ D
Sbjct: 101 KSIRVMYSHRDPSSRKSGTA----NIFIKNLDKTIDHKALHDTFSS-FGQIMSCKIATDG 155
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
+G+SKGYGFV+F E+ A+ ++NG+ +++ + VG K+ V
Sbjct: 156 -SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDN----------V 204
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP---- 236
L S NN ++V L +++DL+ F +G + S +
Sbjct: 205 L---------------SKTKFNN--VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD 247
Query: 237 -VGKGCGFVQFADRKNAEEAIHALNGTVI 264
K GFV F + ++A +A+ ALNG +
Sbjct: 248 GRSKCFGFVNFENAEDAAKAVEALNGKKV 276
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E+ + N F G + SA ++R+ G+S+ +GFV F + A K ++ NG + D+
Sbjct: 224 EDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEALNGKKV--DDKE 280
Query: 63 FRLNWASFSAGERRSEA----------ATSD----LSIFVGDLAIDVTDAMLQETFGSRF 108
+ + A ER E + D L++++ +L +TD L+E F S F
Sbjct: 281 WYVGKAQ-KKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMF-SEF 338
Query: 109 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
+I K++ D N G S+G GFV F E +RA+ EMNG ++P+ V VA K+
Sbjct: 339 GTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKE 394
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 127/272 (46%), Gaps = 40/272 (14%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
++ F+ ++SA+V ++ TG+S YG+V S A + ++ N + + + R+
Sbjct: 31 LYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELKNHSSL--NGKVIRV 88
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
W S A R+S ++FV +LA + + L + F ++ +I +K+ S G+S
Sbjct: 89 MWLSRDADARKSGKG----NVFVKNLAASIDNVGLHDLF-QKYGNILSSKIA-RSEDGKS 142
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
KG+G+++F E A+ +MNG ++ + VG K
Sbjct: 143 KGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRK--------------------- 181
Query: 186 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKG 240
++ S D D+ T ++V LD ++++ L + F FG +VS+ I KG
Sbjct: 182 ------SERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKG 235
Query: 241 CGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 272
GFV + +A A+ A++G+ G + + ++
Sbjct: 236 FGFVNYDSPDDARRAMEAMDGSQFGSKILYVA 267
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 39/268 (14%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+H+ F G ++S+K+ R+ + G+S+G+G+++F S +A +Q NG+ + + ++
Sbjct: 119 LHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDK----QI 173
Query: 66 NWASFSAGERRSEAATSDL-----SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
F R+SE + DL +++V +L VT+ L E F S F I + D
Sbjct: 174 YVGKFI---RKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSS-FGKIVSLAIKKDE 229
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
N G+SKG+GFV + ++ RAM M+G ++ + V A K +
Sbjct: 230 N-GQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK----------VEREQI 278
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP---- 236
L G GS I+V +D+ + DE+LR F G+V+S K+
Sbjct: 279 LHHLFVEKGLKHMGS---------NIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDK 329
Query: 237 -VGKGCGFVQFADRKNAEEAIHALNGTV 263
KG GFV F+ A +++ NG +
Sbjct: 330 GTSKGFGFVCFSTVVEAFKSMSCFNGCM 357
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 43/199 (21%)
Query: 74 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRF 133
E+ + A+ +++VGDL DVTDA L + F S F+++ A+V DS TG+S YG+V
Sbjct: 5 EKDAVPASPAATLYVGDLHSDVTDAQLYKAF-SEFNTLISARVCKDSATGKSLCYGYVNL 63
Query: 134 GDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 193
E RA+ N + + +RV +
Sbjct: 64 SSHQEAIRAIELKNHSSLNGKVIRVMWLS------------------------------- 92
Query: 194 GSQSDGDSNNT---TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFVQ 245
D D+ + +FV L + I + L F ++G+++S KI KG G++Q
Sbjct: 93 ---RDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQ 149
Query: 246 FADRKNAEEAIHALNGTVI 264
F ++A AI +NG+ +
Sbjct: 150 FDSEESANVAIQKMNGSTV 168
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 44/262 (16%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+++ F+ V+S +V R++ T S GYG+V + + A ++N N +P + R+
Sbjct: 41 LYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENLN--YVPLNGKPIRI 98
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 125
++ R++ A ++F+ +L + + L ETF S F ++ KV +DSN G S
Sbjct: 99 MFSHRDPLIRKTGFA----NLFIKNLETSIDNKALHETF-SVFGNVLSCKVAMDSN-GHS 152
Query: 126 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH 185
KG+GFV+F ++ A+ +++G+ +++ + VG
Sbjct: 153 KGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFV----------------------- 189
Query: 186 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKG 240
Q T ++V L + EDL+Q F FG + SV I K
Sbjct: 190 --------RCQERSSPKFTNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKC 241
Query: 241 CGFVQFADRKNAEEAIHALNGT 262
GFV F +A A+ LNG+
Sbjct: 242 FGFVNFQSSDSAATAVEKLNGS 263
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 16 VVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAF--RLNWASFSAG 73
V+++ +I G S+ +GFV F S +A ++ NG+ + F R S
Sbjct: 225 VITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREA 284
Query: 74 ERRSEAATSDL---------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGR 124
E ++ L ++++ ++ + + L+E F S F +I KV+ D+ GR
Sbjct: 285 ELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELF-SEFGTITSCKVMSDAR-GR 342
Query: 125 SKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
SKG GFV F E ++A+ EMNG +P+ V VA K+
Sbjct: 343 SKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKE 383
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 29/276 (10%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D +H+ FA G V+S KV + G+S GYGFV++ + +A+ ++ +G M+
Sbjct: 26 IDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCAIEKLDG-MLIKDK 83
Query: 61 QAFRLNWASFSAGERRSEAATSDLS-IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 119
+AF F + RSE + + ++V +L TD L++ F S + I A ++ D
Sbjct: 84 KAF---VGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLF-STYGVITSAVIMKD 139
Query: 120 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSN-RPMRVGVATPKKTYGXXXXXXXXXA 178
N G SK +GFV F + A+ ++NG ++ + + VG A +K
Sbjct: 140 EN-GNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQ-RKCEREAELRAKFEQ 197
Query: 179 VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV- 237
+ GA +++ LD I+DE L++ F +FG + S K+
Sbjct: 198 EKIKRYEKLQGA--------------NLYLKNLDESINDEKLKEMFSEFGTITSCKVMFD 243
Query: 238 ----GKGCGFVQFADRKNAEEAIHALNGTVIGKQTV 269
KG GFV F+ + A +AI+ ++G +IG++ +
Sbjct: 244 AHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPL 279
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 16 VVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAF--RLNWASFSAG 73
V+++ VI + G S+ +GFV F S +A ++ NGT + + R
Sbjct: 130 VITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREA 189
Query: 74 ERRSEAATSDL---------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGR 124
E R++ + ++++ +L + D L+E F S F +I KV+ D++ G
Sbjct: 190 ELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMF-SEFGTITSCKVMFDAH-GH 247
Query: 125 SKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
SKG+GFV F E ++A+ M+G +P+ V VA K+
Sbjct: 248 SKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQRKE 288
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+ E + F G VV+ V +++ T Q +GYGFVEF S A+ ++ N M+
Sbjct: 36 ISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN--MIKLYG 93
Query: 61 QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS 120
+ R+N AS +++S ++L F+G+L DV + +L +TF + + K++ D
Sbjct: 94 KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 148
Query: 121 NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVV 180
+TG S+G+GF+ + A+ MNG + NR + V A K T G
Sbjct: 149 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERH--------- 199
Query: 181 LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDS 213
G P+ +A + + S T+F G S
Sbjct: 200 ---GTPAERVLAASNPTAQKSRPHTLFASGPPS 229
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 186 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------ 239
P GA G S + + T +VG LD IS+E L + F+Q G VV+V +P +
Sbjct: 7 PGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQ 66
Query: 240 GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 272
G GFV+F ++A+ AI LN + + +R++
Sbjct: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 10/174 (5%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D + F G V A+VI N+QT S G+GFV + AE ++ FNG
Sbjct: 120 VDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNG--YDYNG 177
Query: 61 QAFRLNWASFSAGER--RSEAATSD----LSIFVGDLAIDVTDAMLQETFGSRFSSIKGA 114
++ +N AS G R R+E A L I+V +LA +V ++ L++ F S I A
Sbjct: 178 RSLVVNKAS-PKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF-SEHGKIVSA 235
Query: 115 KVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 168
+VV D TGRS+G+GFV DE E A+ ++G R +RV VA + G
Sbjct: 236 RVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRG 289
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D + F +G V A+VI N+ T +S G+GFV + E+ + F+G +
Sbjct: 133 VDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDG-- 190
Query: 61 QAFRLNWASFSAGERRSEAAT--SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 118
+ +N A+ R + T S L +VG+L DV ++ L++ F S ++ A+VV
Sbjct: 191 RLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLF-SEHGKVESAQVVY 249
Query: 119 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT--PKKTY 167
D TGRS+G+GFV +E E A+ ++G + R +RV VA P++++
Sbjct: 250 DRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERPRRSF 300
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 78 EAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 137
E + DL IFVG+L DV L + F + +++ A+V+ + +T RS+G+GFV
Sbjct: 116 EEPSEDLKIFVGNLPFDVDSEKLAQLF-EQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSE 174
Query: 138 ERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQS 197
E RA+ + +G R + V A P+ G P + Q
Sbjct: 175 EVERAVNKFSGFELDGRLLTVNKAAPR-------------------GTP------RLRQP 209
Query: 198 DGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKN 251
++ +VG L D+ + L Q F + G V S ++ +G GFV ++
Sbjct: 210 RTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAE 269
Query: 252 AEEAIHALNGTVIGKQTVRL 271
+AI AL+G + +R+
Sbjct: 270 MNDAIAALDGQSFNGRAIRV 289
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWA 68
F G VVS +++ + T +S G+ FV + AE+ ++ F+GT + +A ++N+
Sbjct: 127 LFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTV--GGRAIKVNFP 184
Query: 69 SFS-AGERRSEAAT------SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
G+R +T S I+ G+L D+T L++ F + + AKVV + N
Sbjct: 185 EVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAKQ-PGLLSAKVVYERN 243
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 162
G+S+GYGFV F + A++ MNGV RP+R+ +A
Sbjct: 244 NGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 27/198 (13%)
Query: 80 ATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 139
+T +FVG+L ++ + L + FG ++ +++ D T RS+G+ FV G+ +
Sbjct: 104 STQSRRLFVGNLPFSLSSSQLAQLFGEA-GNVVSVEILYDDITNRSRGFAFVTMGNVEDA 162
Query: 140 TRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDG 199
A+ +G R ++V V + G G+ +G
Sbjct: 163 EEAIRMFDGTTVGGRAIKVNFP----------------EVPIVGKRVQMGSTYRGYV--- 203
Query: 200 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAE 253
DS + I+ G L D++ + LR+ F + ++S K+ +G GFV F ++ E
Sbjct: 204 DSPHK-IYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVE 262
Query: 254 EAIHALNGTVIGKQTVRL 271
A+ A+NG + + +RL
Sbjct: 263 VALSAMNGVEVQGRPLRL 280
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 9 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWA 68
F G VVS +++ + T +S G+ FV + AE+ ++ F+GT + +A ++N+
Sbjct: 127 LFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTV--GGRAIKVNFP 184
Query: 69 SFS-AGERRSEAAT------SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
G+R +T S I+ G+L D+T L++ F + + AKVV + N
Sbjct: 185 EVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAKQ-PGLLSAKVVYERN 243
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 162
G+S+GYGFV F + A++ MNGV RP+R+ +A
Sbjct: 244 NGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 27/198 (13%)
Query: 80 ATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 139
+T +FVG+L ++ + L + FG ++ +++ D T RS+G+ FV G+ +
Sbjct: 104 STQSRRLFVGNLPFSLSSSQLAQLFGEA-GNVVSVEILYDDITNRSRGFAFVTMGNVEDA 162
Query: 140 TRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDG 199
A+ +G R ++V V + G G+ +G
Sbjct: 163 EEAIRMFDGTTVGGRAIKVNFP----------------EVPIVGKRVQMGSTYRGYV--- 203
Query: 200 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAE 253
DS + I+ G L D++ + LR+ F + ++S K+ +G GFV F ++ E
Sbjct: 204 DSPHK-IYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVE 262
Query: 254 EAIHALNGTVIGKQTVRL 271
A+ A+NG + + +RL
Sbjct: 263 VALSAMNGVEVQGRPLRL 280
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 10/154 (6%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
+D + F G V A+VI N+QT S G+GFV + AE ++ FNG
Sbjct: 120 VDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNG--YDYNG 177
Query: 61 QAFRLNWASFSAGER--RSEAATSD----LSIFVGDLAIDVTDAMLQETFGSRFSSIKGA 114
++ +N AS G R R+E A L I+V +LA +V ++ L++ F S I A
Sbjct: 178 RSLVVNKAS-PKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF-SEHGKIVSA 235
Query: 115 KVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 148
+VV D TGRS+G+GFV DE E A+ ++G
Sbjct: 236 RVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 77 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 136
+E D +F GDL +V D +L + F +RF S A+VV D TG++KGYGF+ F +
Sbjct: 125 AEWPEDDYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANP 183
Query: 137 NERTRAMTEMNGVFCSNRPMRV 158
+ A+ EMNG + NRP+++
Sbjct: 184 ADLAAALKEMNGKYVGNRPIKL 205
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 20 KVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEA 79
+V+ ++ TG+S G+ FV V+QN +G + R+N++ +
Sbjct: 143 EVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEF--MGRTLRVNFSD-KPKPKEPLY 199
Query: 80 ATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 139
++ +FVG+LA VT L + F ++ GA+V+ D TG+S+GYGFV + ++E
Sbjct: 200 PETEYKLFVGNLAWTVTSESLTQAF-QEHGTVVGARVLFDGETGKSRGYGFVSYATKSEM 258
Query: 140 TRAMTEMNGVFCSNRPMRVGVATPKKT 166
A+ M+ V R +RV +A K++
Sbjct: 259 DTALAIMDNVELEGRTLRVSLAQGKRS 285
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 14/172 (8%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTD 60
M + + + FA G VVS +++ ++ T +S G+ FV S A++ ++ F+G+ +
Sbjct: 120 MTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQV--GG 177
Query: 61 QAFRLNWASFSAGERRSEA-----------ATSDLSIFVGDLAIDVTDAMLQETFGSRFS 109
++ ++N+ G R S I+ G+L + L++ F +
Sbjct: 178 RSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQ-P 236
Query: 110 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 161
+ GAK++ + + GRS+G+GFV F A+ MNGV RP+R+ +A
Sbjct: 237 GLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLA 288
>Medtr3g079200.1 | zinc finger CCCH domain protein | HC |
chr3:35625559-35621770 | 20130731
Length = 492
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 200 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHAL 259
D + T++VGGLD+ ++++DLR F G++ SVK+ + + C FV + R+ AE+A L
Sbjct: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 260 -NGTVIGKQTVRLSWGR 275
N VI ++L WGR
Sbjct: 284 SNKLVIKGLRLKLMWGR 300
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMM---- 56
+D + F + G+V +VI +K TG+S G+GFV S A E Q NG ++
Sbjct: 95 VDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRE 154
Query: 57 ---------PNTDQAFRLNWASFSAGER-----RSEAATSDLSIFVGDLAIDVTDAMLQE 102
P + R G+R R ++ D + VG+LA V + L+
Sbjct: 155 LRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALES 214
Query: 103 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 162
FG + + AKV+ D +GRS+G+GFV F +E A+ ++G + R +RV A
Sbjct: 215 LFGEQ-GQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPAD 273
Query: 163 --PKKTY 167
PK+ +
Sbjct: 274 SRPKRQF 280
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 14/193 (7%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FVG+L V A L E F + ++ +V+ D +TGRS+G+GFV E A +
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENA-GDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+NG R +RV P GG G +G SDGD+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRF---GGDRPRGP-PRGGSSDGDNR--- 197
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 259
+ VG L + + L F + G V+ K+ +G GFV F+ + AI L
Sbjct: 198 VHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTL 257
Query: 260 NGTVIGKQTVRLS 272
+G + + +R+S
Sbjct: 258 DGADLNGRAIRVS 270
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 1 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMM---- 56
+D + F + G+V +VI +K TG+S G+GFV S A E Q NG ++
Sbjct: 95 VDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRE 154
Query: 57 ---------PNTDQAFRLNWASFSAGER-----RSEAATSDLSIFVGDLAIDVTDAMLQE 102
P + R G+R R ++ D + VG+LA V + L+
Sbjct: 155 LRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALES 214
Query: 103 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 162
FG + + AKV+ D +GRS+G+GFV F +E A+ ++G + R +RV A
Sbjct: 215 LFGEQ-GQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPAD 273
Query: 163 --PKKTY 167
PK+ +
Sbjct: 274 SRPKRQF 280
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 14/193 (7%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FVG+L V A L E F + ++ +V+ D +TGRS+G+GFV E A +
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENA-GDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+NG R +RV P GG G +G SDGD+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRF---GGDRPRGP-PRGGSSDGDNR--- 197
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 259
+ VG L + + L F + G V+ K+ +G GFV F+ + AI L
Sbjct: 198 VHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTL 257
Query: 260 NGTVIGKQTVRLS 272
+G + + +R+S
Sbjct: 258 DGADLNGRAIRVS 270
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
DE + FA GEV+ A ++R++ TG++ G+GFV F A AE+V+ + +G
Sbjct: 18 DEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEA 77
Query: 54 -TMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIK 112
+P DQ +N + S + S IFVG L +T++ + F +F +I
Sbjct: 78 KKAVPRDDQQ-NINRQTGSV--QGSPGPGRTKKIFVGGLPSTITESDFKMYF-DQFGTIT 133
Query: 113 GAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPKK 165
V+ D NT R +G+GF+ + E R + E+NG + + V A PK+
Sbjct: 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG-----KMVEVKRAVPKE 185
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 39/198 (19%)
Query: 82 SDL-SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
SDL +F+G ++ D + L+E F + + + A ++ D TGR++G+GFV F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFAT-YGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 141 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGD 200
R + + + R + A P+ + G+V QGS G
Sbjct: 62 RVIIDKH--IIDGRTVEAKKAVPRDDQQNI--------------NRQTGSV-QGSPGPGR 104
Query: 201 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEE 254
+ IFVGGL S I++ D + F QFG + V + +G GF+ + ++EE
Sbjct: 105 TKK--IFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEE 158
Query: 255 AI--------HALNGTVI 264
A+ H LNG ++
Sbjct: 159 AVDRVLYKTFHELNGKMV 176
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ---NFNGTM--- 55
+E + F+ GEV A +++++ TG++ G+GFV F A A+ V+Q N +G M
Sbjct: 18 NEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEA 77
Query: 56 ---MPNTDQAFRLNWASFSAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 111
+P DQ N S ++G S IFVG LA VT++ ++ F +F +I
Sbjct: 78 KKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF-DQFGTI 132
Query: 112 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPKK 165
V+ D NT R +G+GF+ + E + + E+NG + + V A PK+
Sbjct: 133 TDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG-----KMVEVKRAVPKE 185
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
DE + FA GEV+ A ++R++ TG++ G+GFV F A AE+V+ + +G
Sbjct: 18 DEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEA 77
Query: 54 -TMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIK 112
+P DQ +N + S + S IFVG L +T++ + F +F +I
Sbjct: 78 KKAVPRDDQQ-NINRQTGSV--QGSPGPGRTKKIFVGGLPSTITESDFKMYF-DQFGTIT 133
Query: 113 GAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPKK 165
V+ D NT R +G+GF+ + E R + E+NG + + V A PK+
Sbjct: 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG-----KMVEVKRAVPKE 185
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 39/198 (19%)
Query: 82 SDL-SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
SDL +F+G ++ D + L+E F + + + A ++ D TGR++G+GFV F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFAT-YGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 141 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGD 200
R + + + R + A P+ + G+V QGS G
Sbjct: 62 RVIIDKH--IIDGRTVEAKKAVPRDDQQNI--------------NRQTGSV-QGSPGPGR 104
Query: 201 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEE 254
+ IFVGGL S I++ D + F QFG + V + +G GF+ + ++EE
Sbjct: 105 TKK--IFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEE 158
Query: 255 AI--------HALNGTVI 264
A+ H LNG ++
Sbjct: 159 AVDRVLYKTFHELNGKMV 176
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ---NFNGTM--- 55
+E + F+ GEV A +++++ TG++ G+GFV F A A+ V+Q N +G M
Sbjct: 18 NEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEA 77
Query: 56 ---MPNTDQAFRLNWASFSAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 111
+P DQ N S ++G S IFVG LA VT++ ++ F +F +I
Sbjct: 78 KKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF-DQFGTI 132
Query: 112 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPKK 165
V+ D NT R +G+GF+ + E + + E+NG + + V A PK+
Sbjct: 133 TDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG-----KMVEVKRAVPKE 185
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 27/195 (13%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
++F + + T+ + E F S+ ++ ++++D N+ RSKG G++ F D A+
Sbjct: 203 TVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 261
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
++G +P+ V + +K L + S+GA G D
Sbjct: 262 -LSGQLLLGQPVMVKPSEAEKN--------------LVQSNASSGAAVVGPYGAVDRK-- 304
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 258
++VG L ++++ +LR+ F FG + V++P+ KG GFVQFA ++A +A +
Sbjct: 305 -LYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-KAAQS 362
Query: 259 LNGTV-IGKQTVRLS 272
LNG + I +T+++S
Sbjct: 363 LNGKLEIAGRTIKVS 377
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMM------ 56
E V+ F+ G+V ++I ++ + +S+G G++EFY + + +G ++
Sbjct: 215 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVM 273
Query: 57 --PNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGA 114
P+ + + + S D ++VG+L ++T+A L+E F F I+
Sbjct: 274 VKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLREIFEP-FGQIEVV 332
Query: 115 KVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF-CSNRPMRVGVAT 162
++ +D TG KG+GFV+F E +A +NG + R ++V T
Sbjct: 333 QLPLDMETGHCKGFGFVQFA-HLEHAKAAQSLNGKLEIAGRTIKVSSVT 380
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 10 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 69
F GE+ + ++++++TGQ G+GF+ + + +KV+++ + + N+ Q
Sbjct: 65 FGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED---SHIINSKQV------E 115
Query: 70 FSAGERRSEAATSDL---SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSK 126
R + D IFVG + +VT+ ++ F +R+ +K +++ D +T RS+
Sbjct: 116 IKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFF-TRYGEVKDHQIMRDHSTNRSR 174
Query: 127 GYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
G+GFV F E ++ N + + + + A PKK
Sbjct: 175 GFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKK 213
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
+E+ + F + G+VV A +++++ TG++ G+GFV F + AE+V+ +G
Sbjct: 16 NEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEA 75
Query: 54 -TMMPNTDQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAMLQETFGSRFSS 110
+P DQ S S G S A T IFVG LA VT++ + F +F +
Sbjct: 76 KKAVPRDDQNVFTRSNSSSHG---SPAPTPIRTKKIFVGGLASTVTESDFKNYF-DQFGT 131
Query: 111 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRVGVATPK 164
I V+ D NT R +G+GF+ + E + + E+NG + + V A PK
Sbjct: 132 ITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-----KMVEVKRAVPK 184
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + L++ F F + A ++ D TGR++G+GFV F D + R + E
Sbjct: 6 LFIGGISWDTNEDRLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ R + A P+ + + GS +
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSN---------------SSSHGSPAPTPIRTKK 107
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA- 258
IFVGGL S +++ D + F QFG + V + +G GF+ + + E+ +H
Sbjct: 108 IFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKT 167
Query: 259 ---LNGTVI 264
LNG ++
Sbjct: 168 FHELNGKMV 176
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
+E+ + F + G+VV A +++++ TG++ G+GFV F + AE+V+ +G
Sbjct: 16 NEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEA 75
Query: 54 -TMMPNTDQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAMLQETFGSRFSS 110
+P DQ S S G S A T IFVG LA VT++ + F +F +
Sbjct: 76 KKAVPRDDQNVFTRSNSSSHG---SPAPTPIRTKKIFVGGLASTVTESDFKNYF-DQFGT 131
Query: 111 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRVGVATPK 164
I V+ D NT R +G+GF+ + E + + E+NG + + V A PK
Sbjct: 132 ITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-----KMVEVKRAVPK 184
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + L++ F F + A ++ D TGR++G+GFV F D + R + E
Sbjct: 6 LFIGGISWDTNEDRLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ R + A P+ + + GS +
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSN---------------SSSHGSPAPTPIRTKK 107
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA- 258
IFVGGL S +++ D + F QFG + V + +G GF+ + + E+ +H
Sbjct: 108 IFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKT 167
Query: 259 ---LNGTVI 264
LNG ++
Sbjct: 168 FHELNGKMV 176
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNG----- 53
+E+ + F + G+VV A +++++ TG++ G+GFV F + AE+V+ +G
Sbjct: 16 NEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEA 75
Query: 54 -TMMPNTDQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAMLQETFGSRFSS 110
+P DQ S S G S A T IFVG LA VT++ + F +F +
Sbjct: 76 KKAVPRDDQNVFTRSNSSSHG---SPAPTPIRTKKIFVGGLASTVTESDFKNYF-DQFGT 131
Query: 111 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRVGVATPK 164
I V+ D NT R +G+GF+ + E + + E+NG + + V A PK
Sbjct: 132 ITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-----KMVEVKRAVPK 184
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + L++ F F + A ++ D TGR++G+GFV F D + R + E
Sbjct: 6 LFIGGISWDTNEDRLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ R + A P+ + + GS +
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSN---------------SSSHGSPAPTPIRTKK 107
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA- 258
IFVGGL S +++ D + F QFG + V + +G GF+ + + E+ +H
Sbjct: 108 IFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKT 167
Query: 259 ---LNGTVI 264
LNG ++
Sbjct: 168 FHELNGKMV 176
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 26/195 (13%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
++F + + T+ + E F S+ ++ ++++D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
++G +P+ V + +K VV G + GAV +
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVV--GPY---GAV-----------DR 317
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 258
++VG L ++++ LR+ F FG V V++P+ KG GF+QFA ++A +A +
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 259 LNGTV-IGKQTVRLS 272
LNG + I +T+++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E V+ F+ G+V ++I ++ + +S+G G++EFY + + +G ++
Sbjct: 228 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVM 286
Query: 63 FRLNWASFSAGERRSEAATS---------DLSIFVGDLAIDVTDAMLQETFGSRFSSIKG 113
+ + A + + + + D ++VG+L ++T++ L+E F F +++
Sbjct: 287 VKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIF-EPFGTVEV 345
Query: 114 AKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 148
++ +D TG KG+GF++F E +A +NG
Sbjct: 346 VQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 26/195 (13%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
++F + + T+ + E F S+ ++ ++++D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
++G +P+ V + +K VV G + GAV +
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVV--GPY---GAV-----------DR 317
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 258
++VG L ++++ LR+ F FG V V++P+ KG GF+QFA ++A +A +
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 259 LNGTV-IGKQTVRLS 272
LNG + I +T+++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E V+ F+ G+V ++I ++ + +S+G G++EFY + + +G ++
Sbjct: 228 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVM 286
Query: 63 FRLNWASFSAGERRSEAATS---------DLSIFVGDLAIDVTDAMLQETFGSRFSSIKG 113
+ + A + + + + D ++VG+L ++T++ L+E F F +++
Sbjct: 287 VKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEP-FGTVEV 345
Query: 114 AKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 148
++ +D TG KG+GF++F E +A +NG
Sbjct: 346 VQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 26/195 (13%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
++F + + T+ + E F S+ ++ ++++D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 145 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 204
++G +P+ V + +K VV G + GAV +
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVV--GPY---GAV-----------DR 317
Query: 205 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 258
++VG L ++++ LR+ F FG V V++P+ KG GF+QFA ++A +A +
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 259 LNGTV-IGKQTVRLS 272
LNG + I +T+++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E V+ F+ G+V ++I ++ + +S+G G++EFY + + +G ++
Sbjct: 228 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVM 286
Query: 63 FRLNWASFSAGERRSEAATS---------DLSIFVGDLAIDVTDAMLQETFGSRFSSIKG 113
+ + A + + + + D ++VG+L ++T++ L+E F F +++
Sbjct: 287 VKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEP-FGTVEV 345
Query: 114 AKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 148
++ +D TG KG+GF++F E +A +NG
Sbjct: 346 VQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 32/194 (16%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSS--IKGAKVVIDSNTGR--SKGYGFVRFGDENERT 140
S+FV +L TD +L+E F I KV G+ S G+GFV F T
Sbjct: 642 SLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETAT 701
Query: 141 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGD 200
++ G A++L H N + + D
Sbjct: 702 SVCNDLQGTVLDGH-----------------------ALILQLCHVKNDDDKVQKKVEKD 738
Query: 201 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG----KGCGFVQFADRKNAEEAI 256
++T + V + + +++DLRQ F FG + S+++P+ +G FV++ ++ A+ A+
Sbjct: 739 KSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNAL 798
Query: 257 HALNGT-VIGKQTV 269
AL+ T + G+ V
Sbjct: 799 TALSSTHLYGRHLV 812
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 14 GEVVSAKVIRNKQTGQ--SEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFS 71
G ++S KV ++ + G+ S G+GFVEF S TA V + GT++ +L
Sbjct: 668 GRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKND 727
Query: 72 AG--ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 129
+++ E S + V ++A + T+ L++ F S F IK ++ + G +G+
Sbjct: 728 DDKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQLF-SPFGQIKSLRLPM--KFGNHRGFA 784
Query: 130 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 161
FV + + E A+T ++ R + + A
Sbjct: 785 FVEYVTQQEAQNALTALSSTHLYGRHLVIERA 816
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF-NGTMMPNTDQ 61
E + F G VV +I++++TGQ +G F+++ + A++ ++ N +P
Sbjct: 101 EEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVG 160
Query: 62 AFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
++ +A GER A + +FVG L + ++E F S++ I+ ++ D +
Sbjct: 161 PIQVRYAD---GERERLGAV-EYKLFVGSLNKQASVKEVEEVF-SKYGRIEDVYLMRD-D 214
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 165
+S+G GFV++ + A+ +NG++ +P+ V A PK+
Sbjct: 215 QKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKR 261
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S+ V +L+ D + L E FG+ F S+ V ID NTG S+G+GFV F + + RA+
Sbjct: 200 SVRVTNLSEDTREPDLHELFGT-FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 145 EMNGVFCSNRPMRVGVATPKKT 166
++NG N ++V ATP+ T
Sbjct: 259 KLNGYGYDNLILKVEWATPRTT 280
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/281 (18%), Positives = 112/281 (39%), Gaps = 45/281 (16%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
V G++V K+I++++TG+S+GY FV + ++ A+K + + +
Sbjct: 120 VRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNK----------- 168
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS-NTGR 124
F R + + +F+G++ T+ ++ ++ ++ D N R
Sbjct: 169 ---EFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSR 225
Query: 125 SKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGG 184
++G+ FV + A + + S+ ++ TP T+
Sbjct: 226 NRGFAFVLY-----YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTS----------- 269
Query: 185 HPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGC--- 241
P A A S ++V + +++ E L++ F + G+V V +P GK
Sbjct: 270 -PDQSAAA--------SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKR 320
Query: 242 --GFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNK 280
GF+ +A+R +A +A+ I Q + + + K
Sbjct: 321 DFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEK 361
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/281 (18%), Positives = 112/281 (39%), Gaps = 45/281 (16%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
V G++V K+I++++TG+S+GY FV + ++ A+K + + +
Sbjct: 120 VRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNK----------- 168
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS-NTGR 124
F R + + +F+G++ T+ ++ ++ ++ D N R
Sbjct: 169 ---EFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSR 225
Query: 125 SKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGG 184
++G+ FV + A + + S+ ++ TP T+
Sbjct: 226 NRGFAFVLY-----YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTS----------- 269
Query: 185 HPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGC--- 241
P A A S ++V + +++ E L++ F + G+V V +P GK
Sbjct: 270 -PDQSAAA--------SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKR 320
Query: 242 --GFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNK 280
GF+ +A+R +A +A+ I Q + + + K
Sbjct: 321 DFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEK 361
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/281 (18%), Positives = 112/281 (39%), Gaps = 45/281 (16%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
V G++V K+I++++TG+S+GY FV + ++ A+K + + +
Sbjct: 120 VRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNK----------- 168
Query: 66 NWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDS-NTGR 124
F R + + +F+G++ T+ ++ ++ ++ D N R
Sbjct: 169 ---EFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSR 225
Query: 125 SKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGG 184
++G+ FV + A + + S+ ++ TP T+
Sbjct: 226 NRGFAFVLY-----YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTS----------- 269
Query: 185 HPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGC--- 241
P A A S ++V + +++ E L++ F + G+V V +P GK
Sbjct: 270 -PDQSAAA--------SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKR 320
Query: 242 --GFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNK 280
GF+ +A+R +A +A+ I Q + + + K
Sbjct: 321 DFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEK 361
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 82 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 141
S +F+G ++ + L+E F SR+ + AK+++D +TGRS+G+GF+ F E +
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 142 AMTEMNGVFCSNRPMRVGVATPK 164
A+ M+ R +RV AT +
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 82 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 141
S +F+G ++ + L+E F SR+ + AK+++D +TGRS+G+GF+ F E +
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 142 AMTEMNGVFCSNRPMRVGVATPK 164
A+ M+ R +RV AT +
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 84 LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM 143
+FVG L+ T+ L + F S + + AKV+ D + +SKGYGFV F ++E +A+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAF-SNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAI 90
Query: 144 TEMNGVFCSNRPMRVGVATP 163
TEMN + R + V A P
Sbjct: 91 TEMNEKALNGRVVFVDYAKP 110
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 82 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 141
S +F+ L+ + + +L++TF + I KV+ + TG SKGYGFVRF E
Sbjct: 31 SSTKLFIAGLSYNTNETVLRDTF-EQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 142 AMTEMNGVFCSNRPMRVGVA 161
A E++G R +RVG A
Sbjct: 90 ARKELHGQIVDGRRIRVGYA 109
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 80 ATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 139
+ S ++VG ++ DA L+E+F +R+ + A+V+ID GRSKG+GFV F E
Sbjct: 36 SMSSAKLYVGGISYSTDDAGLRESF-ARYGDVLDARVIIDREQGRSKGFGFVTFATSEEA 94
Query: 140 TRAMTEMNGVFCSNRPMRVGVATPK 164
+ A+ M+ R +RV A +
Sbjct: 95 SAALQAMDNQELHGRTVRVNYAQER 119
>Medtr8g070490.1 | RNA recognition motif (RRM) containing protein |
HC | chr8:29979285-29991364 | 20130731
Length = 1031
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 194 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---------PVGKGCGFV 244
GS DGD T ++VG L + + L + F +FG + SVKI + CGFV
Sbjct: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
Query: 245 QFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 276
F +R + + A + G V+ + +++ WG+S
Sbjct: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
>Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883965-21877390 | 20130731
Length = 865
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 248
++ + + SD D N T+ V LD +S+EDLRQ F +G+V ++ P + F+++ D
Sbjct: 267 SIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYD 326
Query: 249 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 278
+ AE A+ +LN + I + ++L R PG
Sbjct: 327 VRAAEAALKSLNRSDIAGKRIKLEPSR-PG 355
>Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883858-21877390 | 20130731
Length = 865
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 248
++ + + SD D N T+ V LD +S+EDLRQ F +G+V ++ P + F+++ D
Sbjct: 267 SIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYD 326
Query: 249 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 278
+ AE A+ +LN + I + ++L R PG
Sbjct: 327 VRAAEAALKSLNRSDIAGKRIKLEPSR-PG 355
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+FVG L+ V + L++ F S F + ++V D ++GR++G+GFV F +E+ A
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSS-FGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 146 MNGVFCSNRPMRVGVATPK 164
M+G RP+R+ A K
Sbjct: 97 MDGKALLGRPLRINFALEK 115
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 87 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 146
FVG LA L++ F S+F I +KV+ D TGRS+G+GFV F +E A+ EM
Sbjct: 11 FVGGLAWATDSQALEQAF-SKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 147 NGVFCSNRPMRVGVA 161
NG R + V A
Sbjct: 70 NGQDIDGRNITVNEA 84
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 81 TSDLSIFVGDLAIDV-TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 139
T+ +FVG LA + TD M T+ +F I A ++ D NTG+SKGYGFV F D
Sbjct: 13 TTFTKVFVGGLAWETPTDEM--RTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESA 70
Query: 140 TRAMTEMNGV 149
RA + N V
Sbjct: 71 RRACADPNPV 80
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G L+ +V D L++ F + + + A+V+ D TGRS+G+GFV F E T A++
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTT-YGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
Query: 146 MNGVFCSNRPMRVGVATPKK 165
M+G + R +RV A ++
Sbjct: 96 MDGQDLNGRNIRVSYANDRQ 115
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 248
++ + + S+ D N T+ V LD +S++DLRQ F +G+V ++ P + F++F D
Sbjct: 269 SIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 328
Query: 249 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 278
+ A+ A+ ALN + I + ++L R PG
Sbjct: 329 VRAADAALKALNRSDIAGKRIKLEPSR-PG 357
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 6 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 65
+ + F G V+ ++I++K G+ +GY FV S A+ + FN T + + + R+
Sbjct: 112 IKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKFNATEI--SGRILRV 168
Query: 66 NWAS----FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 121
+A + I+ +LA L++ F F + A+VV
Sbjct: 169 EFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQVP 228
Query: 122 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 164
G+S GYGFV + E E A++ + G RP+ V ++ K
Sbjct: 229 GGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERK 271
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 248
++ + + S+ D N T+ V LD +S++DLRQ F +G+V ++ P + F++F D
Sbjct: 164 SIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 223
Query: 249 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 278
+ A+ A+ ALN + I + ++L R PG
Sbjct: 224 VRAADAALKALNRSDIAGKRIKLEPSR-PG 252
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
T+ +FVG LA + ++ F +F I A V+ D NTGRSKGYGFV F D
Sbjct: 26 TTYTKVFVGGLAWETQSETMRRYF-EQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 141 RAMTEMNGVFCSNR 154
RA + + V R
Sbjct: 85 RACADPSPVIDGRR 98
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + L+E F S + + V+ + NTG+ +G+GFV F D + R + +
Sbjct: 8 LFIGGISWDTNEEKLKEHF-SNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + +T + N S + G+
Sbjct: 67 KHVIDG-------------RTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKK 113
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 259
IFVGGL +++E RQ F +G V V + +G GF+ F + + +H
Sbjct: 114 IFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKT 173
Query: 260 NGTVIGKQ 267
+ GKQ
Sbjct: 174 FHDLNGKQ 181
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNGTMM-- 56
+E + F++ G+V++ V+R K TG+ G+GFV F + ++VL++ +G +
Sbjct: 18 NEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDA 77
Query: 57 ----PNTDQAFRLNWASFSAGERRSEAATSDL---SIFVGDLAIDVTDAMLQETFGSRFS 109
DQ ++ S ++ + ++ IFVG L + + ++ F +
Sbjct: 78 KRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYF-EAYG 136
Query: 110 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM 143
+ V+ D NTGR +G+GF+ F E R +
Sbjct: 137 HVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVL 170
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ D + L+E F S + + V+ + NTG+ +G+GFV F D + R + +
Sbjct: 8 LFIGGISWDTNEEKLKEHF-SNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 146 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 205
+ + +T + N S + G+
Sbjct: 67 KHVIDG-------------RTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKK 113
Query: 206 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 259
IFVGGL +++E RQ F +G V V + +G GF+ F + + +H
Sbjct: 114 IFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKT 173
Query: 260 NGTVIGKQ 267
+ GKQ
Sbjct: 174 FHDLNGKQ 181
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 2 DENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN---FNGTMM-- 56
+E + F++ G+V++ V+R K TG+ G+GFV F + ++VL++ +G +
Sbjct: 18 NEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDA 77
Query: 57 ----PNTDQAFRLNWASFSAGERRSEAATSDL---SIFVGDLAIDVTDAMLQETFGSRFS 109
DQ ++ S ++ + ++ IFVG L + + ++ F +
Sbjct: 78 KRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYF-EAYG 136
Query: 110 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM 143
+ V+ D NTGR +G+GF+ F E R +
Sbjct: 137 HVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVL 170
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 248
++ + + S+ D N T+ V LD +S++DLRQ F +G+V ++ P + F++F D
Sbjct: 280 SIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 339
Query: 249 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 278
+ A+ A+ ALN + I + ++L R PG
Sbjct: 340 VRAADAALKALNRSDIAGKRIKLEPSR-PG 368
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 248
++ + + S+ D N T+ V LD +S++DLRQ F +G+V ++ P + F++F D
Sbjct: 266 SIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 325
Query: 249 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 278
+ A+ A+ ALN + I + ++L R PG
Sbjct: 326 VRAADAALKALNRSDIAGKRIKLEPSR-PG 354
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 190 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 248
++ + + S+ D N T+ V LD +S++DLRQ F +G+V ++ P + F++F D
Sbjct: 269 SIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 328
Query: 249 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 278
+ A+ A+ ALN + I + ++L R PG
Sbjct: 329 VRAADAALKALNRSDIAGKRIKLEPSR-PG 357
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 81 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 140
T+ +FVG LA + ++ F +F I A V+ D NTGRSKGYGFV F D
Sbjct: 26 TTYTKVFVGGLAWETQSETMRRYF-EQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 141 RAMTEMNGVFCSNR 154
RA + + V R
Sbjct: 85 RACADPSPVIDGRR 98
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 68 ASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKG 127
A AG + E D ++++G L + D L + F +F I AKV+ D TG SKG
Sbjct: 437 AGLGAGAVKKE--IDDTNLYIGYLPPTLEDDGLIQLF-QQFGEIVMAKVIKDRITGLSKG 493
Query: 128 YGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 161
YGFV++ D A+ MNG R + V VA
Sbjct: 494 YGFVKYADITMANNAIVAMNGYRLEGRTIAVRVA 527
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 3 ENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQA 62
E +V F GE+ + +++++ TG+ G+GF+ + + ++V+Q N + D+
Sbjct: 32 EEFV-KYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE-NHII---NDKQ 86
Query: 63 FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 122
+ + ++ T IFVG + V++ L+ F S+ ++ +++ D T
Sbjct: 87 VEIKRTIPKGASQTNDFKTK--KIFVGGIPATVSEDELK-IFFSKHGNVVEHEIIRDHTT 143
Query: 123 GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 165
RS+G+GFV F + + + N + + + + A PKK
Sbjct: 144 KRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
S+ V +L+ D + L E F F ++ V ID TG S+G+GFV F + RA+
Sbjct: 212 SVRVTNLSEDTREPDLLELFRP-FGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAIN 270
Query: 145 EMNGVFCSNRPMRVGVATPKKT 166
++NG N +RV ATP+ T
Sbjct: 271 KLNGYGYDNLILRVEWATPRTT 292
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 144
+++VG LA +V +++L F F IK K +D T + + +GFV F + + + AM
Sbjct: 11 TLYVGGLAEEVNESILHAAFIP-FGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 145 EMNGVFCSNRPMRVGVATPKKTYG 168
M+G R + V A P+K G
Sbjct: 70 NMDGAELYGRVLTVNYALPEKIKG 93
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
+F+G ++ + L+E F SR+ + A++++D TGRS+G+GF+ F E + A+
Sbjct: 44 LFIGGVSYSTDENSLREAF-SRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 146 MNGVFCSNRPMRVGVATPK 164
++G R +RV A +
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 86 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 145
IFV LA T+ L E F S++ ++ A +V++ R KG+G+V F +E E +A
Sbjct: 34 IFVKGLAFSTTEEKLAEAF-SQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 146 MNGVFCSNRPMRVGVATP 163
MNG R + V + P
Sbjct: 93 MNGKILHGRVLYVDMDPP 110
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 30/220 (13%)
Query: 45 EKVLQNFNGTMMPNTDQAFRLNWASFSAGERR-SEAATSDLSIFVGDLAIDVTDAMLQET 103
EK+L+ F + + + S R+ ++ + IFV L D T L T
Sbjct: 125 EKLLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTT 184
Query: 104 FGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATP 163
F S++ I+ K V D +G+SKGY F+ F RA+ + V NR +A+
Sbjct: 185 F-SKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVI-GNRTTSCQLAS- 241
Query: 164 KKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQP 223
AG A + + IFV + SDI + L +
Sbjct: 242 ------------------AG---PVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 224 FLQFGDV----VSVKIPVGKGCGFVQFADRKNAEEAIHAL 259
F QFG+V + + GK GF F K E A AL
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFV-YKTVESAKKAL 319
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 30/220 (13%)
Query: 45 EKVLQNFNGTMMPNTDQAFRLNWASFSAGERR-SEAATSDLSIFVGDLAIDVTDAMLQET 103
EK+L+ F + + + S R+ ++ + IFV L D T L T
Sbjct: 125 EKLLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTT 184
Query: 104 FGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATP 163
F S++ I+ K V D +G+SKGY F+ F RA+ + V NR +A+
Sbjct: 185 F-SKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVI-GNRTTSCQLAS- 241
Query: 164 KKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQP 223
AG A + + IFV + SDI + L +
Sbjct: 242 ------------------AG---PVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 224 FLQFGDV----VSVKIPVGKGCGFVQFADRKNAEEAIHAL 259
F QFG+V + + GK GF F K E A AL
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFV-YKTVESAKKAL 319
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 30/220 (13%)
Query: 45 EKVLQNFNGTMMPNTDQAFRLNWASFSAGERR-SEAATSDLSIFVGDLAIDVTDAMLQET 103
EK+L+ F + + + S R+ ++ + IFV L D T L T
Sbjct: 125 EKLLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTT 184
Query: 104 FGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATP 163
F S++ I+ K V D +G+SKGY F+ F RA+ + V NR +A+
Sbjct: 185 F-SKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVI-GNRTTSCQLAS- 241
Query: 164 KKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQP 223
AG A + + IFV + SDI + L +
Sbjct: 242 ------------------AG---PVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 224 FLQFGDV----VSVKIPVGKGCGFVQFADRKNAEEAIHAL 259
F QFG+V + + GK GF F K E A AL
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFV-YKTVESAKKAL 319
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 33/194 (17%)
Query: 85 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGR----SKGYGFVRFGDENERT 140
S+FV +L TD L+E F + V + + + S G+GFV F T
Sbjct: 487 SLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETAT 546
Query: 141 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGD 200
++ G + A +L H N Q + + D
Sbjct: 547 SVCNDLQGAVLDS-----------------------YAHILQPCHVKNVGKVQ-KKVEKD 582
Query: 201 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG----KGCGFVQFADRKNAEEAI 256
++T + V + + + +DLRQ F FG + +K+P+ +G FV++ ++ A+ A+
Sbjct: 583 KSSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNHRGFAFVEYVTQQEAQNAL 642
Query: 257 HALNGT-VIGKQTV 269
AL+ T + G+ V
Sbjct: 643 TALSSTHLYGRHLV 656