Miyakogusa Predicted Gene
- Lj4g3v0575400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0575400.1 Non Characterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,29.17,0.000000000001,RRM,RNA recognition motif domain; RRM_1,RNA
recognition motif domain; RNA-binding domain, RBD,NULL; ,CUFF.47618.1
(370 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 390 e-108
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 292 4e-79
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 288 6e-78
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 286 2e-77
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 283 2e-76
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 277 1e-74
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 275 5e-74
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 270 2e-72
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 270 2e-72
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 269 3e-72
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 268 5e-72
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 103 3e-22
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 7e-22
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 7e-22
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 8e-22
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 100 4e-21
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 92 7e-19
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-17
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 86 6e-17
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 85 1e-16
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 84 3e-16
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 84 3e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 83 5e-16
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 82 7e-16
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 82 7e-16
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 79 7e-15
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 78 2e-14
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 77 3e-14
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 77 3e-14
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 74 2e-13
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 74 2e-13
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 66 7e-11
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 66 7e-11
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 64 3e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 57 3e-08
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 56 6e-08
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 7e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 55 8e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 54 2e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 54 2e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 54 2e-07
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 49 7e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 49 7e-06
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/224 (83%), Positives = 200/224 (89%), Gaps = 4/224 (1%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+EIRTIWLGDLHHWMDE ++HNCFAHTGEV SAKVIRNKQTGQSEGYGFVEFY+RA AEK
Sbjct: 113 EEIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEK 172
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSA----GERRSEAATSDLSIFVGDLAIDVTDAMLQE 226
VLQNFNGTMMPNTDQAFRLNWA+FSA GERRS ATSDLS+FVGDLAIDVTDAMLQE
Sbjct: 173 VLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQE 232
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
TF S+FSSIKGAKVVIDSNTGRSKGYGFVRFGDE+ERTRAMTEMNGV+CS+RPMRVGVAT
Sbjct: 233 TFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVAT 292
Query: 287 PKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
PKKTYG V+ GG SNGA+AQGSQS+GDSNNTT+
Sbjct: 293 PKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTI 336
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 170/221 (76%), Gaps = 16/221 (7%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
E +T+W+GDLH WMDE+Y+H CFA TGE+ S KVIRNK +G SEGYGF EF+S ATAEKV
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 172 LQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 231
LQN+ G +MPN DQAFRLNWA+FS G++ S+ T DLSIFVGDLA DVTD++L ETF S
Sbjct: 155 LQNYAGILMPNADQAFRLNWATFSTGDKGSDNVT-DLSIFVGDLAADVTDSVLHETFSSS 213
Query: 232 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+ S+K AKVV D+NTGRSKGYGFVRFGDE+ER++AMT+MNGV+CS+RPMR+G ATP+K+
Sbjct: 214 YPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSS 273
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTVSL 332
G GG SNG SQS+ DS NTTVS
Sbjct: 274 GHQ-----------PGGQ-SNGT---SSQSEADSTNTTVSF 299
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 288 bits (737), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 139/219 (63%), Positives = 169/219 (77%), Gaps = 16/219 (7%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
E +T+W+GDLH WMDE+Y+H CFA TGE+ S KVIRNK +G SEGYGF EF+S ATAEKV
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 172 LQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 231
LQN+ G +MPN DQAFRLNWA+FS G++ S+ T DLSIFVGDLA DVTD++L ETF S
Sbjct: 155 LQNYAGILMPNADQAFRLNWATFSTGDKGSDNVT-DLSIFVGDLAADVTDSVLHETFSSS 213
Query: 232 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+ S+K AKVV D+NTGRSKGYGFVRFGDE+ER++AMT+MNGV+CS+RPMR+G ATP+K+
Sbjct: 214 YPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSS 273
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
G GG SNG SQS+ DS NTT+
Sbjct: 274 GHQ-----------PGGQ-SNGT---SSQSEADSTNTTI 297
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHT-GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+I++GDL + ++ +H F+ + V +AKV+ + TG+S+GYGFV F + + +
Sbjct: 191 SIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMT 250
Query: 174 NFNGTMMPNTDQAFRLNWASF--SAGER----------RSEAATSDLSIFVGDLAIDVTD 221
NG + + R+ A+ S+G + +SEA +++ +IFVG L +VTD
Sbjct: 251 QMNGVYC--SSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTD 308
Query: 222 AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMR 281
L++TF S++ I K+ + KG GFV+F + N A+ ++NG + +R
Sbjct: 309 EDLKQTF-SQYGEIASVKIPV------GKGCGFVQFANRNNAEEALQKLNGTMIGKQTVR 361
Query: 282 V 282
+
Sbjct: 362 L 362
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/219 (63%), Positives = 162/219 (73%), Gaps = 15/219 (6%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+T+W+GDLHHWMDENY+H CFA TGE+ S KVIRNKQT Q+EGYGFVEF S TAEKVLQ
Sbjct: 93 KTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQ 152
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ G +MPNT+Q FRLNWA+FS G+ + DLSIFVGDLA DVTD ML ETF ++
Sbjct: 153 TYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYP 212
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
S+K AKVV D+NTGRSKGYGFVRFGD+ ER++A+ EMNGVFCS+R MR+G ATP+K+ G
Sbjct: 213 SVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGY 272
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTVSL 332
GG SNG SQSD DS NTTVS
Sbjct: 273 QQ-----------GGQ-SNGTP---SQSDTDSTNTTVSF 296
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/217 (62%), Positives = 161/217 (74%), Gaps = 15/217 (6%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+T+W+GDLHHWMDENY+H CFA TGE+ S KVIRNKQT Q+EGYGFVEF S TAEKVLQ
Sbjct: 93 KTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQ 152
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ G +MPNT+Q FRLNWA+FS G+ + DLSIFVGDLA DVTD ML ETF ++
Sbjct: 153 TYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYP 212
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
S+K AKVV D+NTGRSKGYGFVRFGD+ ER++A+ EMNGVFCS+R MR+G ATP+K+ G
Sbjct: 213 SVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGY 272
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
GG SNG SQSD DS NTT+
Sbjct: 273 QQ-----------GGQ-SNGTP---SQSDTDSTNTTI 294
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 22/181 (12%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHT-GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+I++GDL + + + F+ V +AKV+ + TG+S+GYGFV F K L
Sbjct: 188 SIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALN 247
Query: 174 NFNGTMMPNTDQAFRLNWAS------FSAG------ERRSEAATSDLSIFVGDLAIDVTD 221
NG + +A R+ A+ + G +S+ +++ +IFVG L T
Sbjct: 248 EMNGVFC--SSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATA 305
Query: 222 AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMR 281
L++ F S++ I K+ + KG GFV+F + N A+ ++NG + +R
Sbjct: 306 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTVGKQTVR 358
Query: 282 V 282
+
Sbjct: 359 L 359
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 123/182 (67%), Positives = 150/182 (82%), Gaps = 1/182 (0%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E+RT+W+GDL +W+DENY+ +CF+HTGEV+S K+IRNK TGQ EGYGF+EF S + AE+
Sbjct: 12 EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
VLQ +NGT MP T+Q FRLNWASF GERR +A D SIFVGDLA DVTD +LQETF +
Sbjct: 72 VLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAG-PDHSIFVGDLAPDVTDYLLQETFRT 130
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+ S++GAKVV D NTGRSKGYGFV+F DE+ER RAM+EMNGV+CS RPMR+ ATPKKT
Sbjct: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
Query: 291 YG 292
G
Sbjct: 191 TG 192
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 275 bits (703), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 134/221 (60%), Positives = 160/221 (72%), Gaps = 15/221 (6%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
DE+RT+W+GDL +WMDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE+
Sbjct: 57 DEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAER 116
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRS-EAATSDLSIFVGDLAIDVTDAMLQETFG 229
VLQ +NGT+MPN Q +RLNWA+FSAGER S + D +IFVGDLA DVTD +LQETF
Sbjct: 117 VLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFR 176
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
+R++S+KGAKVVID TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 177 ARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKN 236
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
A P G QS+ D NNTT+
Sbjct: 237 P--------------AATTQPKASYNPSGGQSENDPNNTTI 263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 19/180 (10%)
Query: 115 TIWLGDLHHWMDENYVHNCF-AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
TI++GDL + + + F A V AKV+ ++ TG+S+GYGFV F + +
Sbjct: 156 TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 215
Query: 174 NFNGTMM--------PNTDQ---AFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDA 222
G + P T++ A AS++ +SE ++ +IFVG+L +VTD
Sbjct: 216 EMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDD 275
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L++ F +++ + K+ K GFV+F D + A+ +NG + +R+
Sbjct: 276 HLRQVF-TQYGELVHVKIP------SGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRL 328
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 147/180 (81%), Gaps = 1/180 (0%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
DE+RT+W+GDL +WMDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE
Sbjct: 56 ADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAE 115
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAAT-SDLSIFVGDLAIDVTDAMLQETF 228
+VLQ +NGT+MPN Q +RLNWA+FSAGER S D +IFVGDLA DVTD +LQETF
Sbjct: 116 RVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETF 175
Query: 229 GSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
+R++S+KGAKVVID TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 147/180 (81%), Gaps = 1/180 (0%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
DE+RT+W+GDL +WMDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE
Sbjct: 56 ADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAE 115
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAAT-SDLSIFVGDLAIDVTDAMLQETF 228
+VLQ +NGT+MPN Q +RLNWA+FSAGER S D +IFVGDLA DVTD +LQETF
Sbjct: 116 RVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETF 175
Query: 229 GSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
+R++S+KGAKVVID TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 147/180 (81%), Gaps = 1/180 (0%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
DE+RT+W+GDL +WMDENY++ CF +TGE+ S KVIRNKQT QSEGYGF+EF +RATAE
Sbjct: 56 ADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAE 115
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAAT-SDLSIFVGDLAIDVTDAMLQETF 228
+VLQ +NGT+MPN Q +RLNWA+FSAGER S D +IFVGDLA DVTD +LQETF
Sbjct: 116 RVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETF 175
Query: 229 GSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
+R++S+KGAKVVID TGRSKGYGFVRF DE E+ RAMTEM GV CS RPMR+G AT K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 268 bits (686), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 162/220 (73%), Gaps = 14/220 (6%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
DE++T+W+GDL +WMDENY++NCF+HTGEV S KVIRNKQT QSEGYGF+EF SRA AE+
Sbjct: 71 DEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAER 130
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
VLQ FNGT+MPN Q FRLNWA+FS+GE+R + + D +IFVGDLA DV+D L E F +
Sbjct: 131 VLQTFNGTIMPNGGQNFRLNWATFSSGEKRHD-DSPDYTIFVGDLAADVSDHHLTEVFRT 189
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
R++S+KGAKVVID TGR+KGYGFVRF DE+E+ RAMTEM GV CS RPMR+G A+ K
Sbjct: 190 RYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPAS-NKN 248
Query: 291 YGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTV 330
G +P GA Q++ D NNTT+
Sbjct: 249 LGTQTSKASYQ-------NPQGGA-----QNENDPNNTTI 276
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 115 TIWLGDLHHWMDENYVHNCF-AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
TI++GDL + ++++ F V AKV+ ++ TG+++GYGFV F + + +
Sbjct: 168 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMT 227
Query: 174 NFNGTMMP----------NTDQAFRLNWASF--SAGERRSEAATSDLSIFVGDLAIDVTD 221
G + N + + + AS+ G ++E ++ +IFVG+L +VTD
Sbjct: 228 EMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTD 287
Query: 222 AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMR 281
L++ F +++ + K+ K GFV+F D + A+ +NG + +R
Sbjct: 288 EHLKQVF-TQYGELVHVKIP------SGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVR 340
Query: 282 V 282
+
Sbjct: 341 L 341
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R++++G++H + E + F+ G + K+IR +++ YGFV+++ R++A +
Sbjct: 46 RSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIV 101
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG + Q+ ++NWA ++ G+R E + IFVGDL+ +VTDA L F S +S
Sbjct: 102 TLNGRNI--FGQSIKVNWA-YTRGQR--EDTSGHFHIFVGDLSPEVTDATLYACF-SAYS 155
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
S A+V+ D TGRS+G+GFV F ++ E A+ ++ G + +R +R AT
Sbjct: 156 SCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWAT 208
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 39/232 (16%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++GDL + + ++ CF+ A+V+ +++TG+S G+GFV F ++ A+ + +
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 176 NGTMMPNTDQAFRLNWASFSA---GERRS-----------------EAATSD-------- 207
G + + R NWA+ A GE +S + TSD
Sbjct: 193 TGKWL--GSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQ 250
Query: 208 -LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRA 266
+++VG+LA +VT L F + G + D R KG+GFVR+ E A
Sbjct: 251 YTTVYVGNLAPEVTSVDLHHHFHAL-----GVGTIEDVRVQRDKGFGFVRYSTHGEAALA 305
Query: 267 MTEMNGVFCSNRPMRV---GVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAV 315
+ N F +P++ TP T V + G P+ A+
Sbjct: 306 IQMGNTRFLFGKPIKCSWGSKPTPPGTASTPLPPPASTHVPVPGFSPAGLAL 357
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 10/174 (5%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R++++G++H + + + F G + K+IR +++ YGFV+++ RA+A +
Sbjct: 59 CRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAI 114
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
+G + QA ++NWA ++ R E + ++FVGDL+ +VTDA L F S +
Sbjct: 115 MTLHGRQL--YGQALKVNWA-YANSSR--EDTSGHFNVFVGDLSPEVTDATLFACF-SVY 168
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
++ A+V+ D TGRSKGYGFV F D + A+ +M G + NR +R AT
Sbjct: 169 TTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++GDL + + + CF+ A+V+ + +TG+S+GYGFV F A+ + +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSD---------------------------- 207
G + N + R NWA+ AG +E +D
Sbjct: 207 TGKWLGN--RQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNP 264
Query: 208 --LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
+++VG+L DVT A L F + GA V+ + KG+GFVR+ E
Sbjct: 265 SYTTVYVGNLPHDVTQAELHCQFHAL-----GAGVLEEVRVQSGKGFGFVRYNTHEEAAM 319
Query: 266 AMTEMNGVFCSNRPMR 281
A+ NG RP+R
Sbjct: 320 AIQMANG-----RPVR 330
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 10/174 (5%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R++++G++H + + + F G + K+IR +++ YGFV+++ RA+A +
Sbjct: 59 CRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAI 114
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
+G + QA ++NWA ++ R E + ++FVGDL+ +VTDA L F S +
Sbjct: 115 MTLHGRQL--YGQALKVNWA-YANSSR--EDTSGHFNVFVGDLSPEVTDATLFACF-SVY 168
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
++ A+V+ D TGRSKGYGFV F D + A+ +M G + NR +R AT
Sbjct: 169 TTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++GDL + + + CF+ A+V+ + +TG+S+GYGFV F A+ + +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSD---------------------------- 207
G + N + R NWA+ AG +E +D
Sbjct: 207 TGKWLGN--RQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNP 264
Query: 208 --LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
+++VG+L DVT A L F + GA V+ + KG+GFVR+ E
Sbjct: 265 SYTTVYVGNLPHDVTQAELHCQFHAL-----GAGVLEEVRVQSGKGFGFVRYNTHEEAAM 319
Query: 266 AMTEMNGVFCSNRPMR 281
A+ NG RP+R
Sbjct: 320 AIQMANG-----RPVR 330
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 10/174 (5%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R++++G++H + + + F G + K+IR +++ YGFV+++ RA+A +
Sbjct: 43 CRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAI 98
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
+G + QA ++NWA ++ R E + ++FVGDL+ +VTDA L F S +
Sbjct: 99 MTLHGRQL--YGQALKVNWA-YANSSR--EDTSGHFNVFVGDLSPEVTDATLFACF-SVY 152
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
++ A+V+ D TGRSKGYGFV F D + A+ +M G + NR +R AT
Sbjct: 153 TTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 206
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++GDL + + + CF+ A+V+ + +TG+S+GYGFV F A+ + +
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSD---------------------------- 207
G + N + R NWA+ AG +E +D
Sbjct: 191 TGKWLGN--RQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNP 248
Query: 208 --LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
+++VG+L DVT A L F + GA V+ + KG+GFVR+ E
Sbjct: 249 SYTTVYVGNLPHDVTQAELHCQFHAL-----GAGVLEEVRVQSGKGFGFVRYNTHEEAAM 303
Query: 266 AMTEMNGVFCSNRPMR 281
A+ NG RP+R
Sbjct: 304 AIQMANG-----RPVR 314
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R++++G++H + E + FA TG V K+ R +++ YGF+ ++ R +A +
Sbjct: 62 RSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 117
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG + Q ++NWA +++G+R E + +IFVGDL+ +VTDA L F S +
Sbjct: 118 TLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHYNIFVGDLSPEVTDATLFACF-SVYQ 171
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
S A+V+ D TGRS+G+GFV F + + A+ ++ G + +R +R AT
Sbjct: 172 SCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 224
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 46/210 (21%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++GDL + + + CF+ A+V+ +++TG+S G+GFV F S+ A+ + +
Sbjct: 149 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
Query: 176 NGTMMPNTDQAFRLNWASFSAG---------------------ERRSEAATSDL------ 208
G + + R NWA+ AG E E +++D+
Sbjct: 209 TGKWL--GSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQ 266
Query: 209 --SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRA 266
+++VG+L + T L F + GA V+ + R KG+GFVR+ E A
Sbjct: 267 YTTVYVGNLGSEATQLDLHRHFHAL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALA 321
Query: 267 MTEMNG--------VFCS--NRPMRVGVAT 286
+ N + CS ++P G A+
Sbjct: 322 IQMGNAQSYLCGKIIKCSWGSKPTPPGTAS 351
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL H + ++ +++ F G+VVS ++ R+ + QS GYG+V F + A K +
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P ++ R+ ++ R+S AA +IF+ +L + L +TF S F +
Sbjct: 85 LNFT--PLNNKPIRIMYSHRDPSVRKSGAA----NIFIKNLDRAIDHKALYDTF-SIFGN 137
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I K+ +D+ +G SKGYGFV+F +E A+ ++NG+ +++P+ VG
Sbjct: 138 ILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + ++ + N F G + SA V+R+ G+S+ +GFV F + A + ++
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEAL 263
Query: 176 NGTMMPNTD----QAFRLNWASFSAGERRSEAATSDLSIFVG------DLAIDVTDAMLQ 225
NG + + +A + ER ++ + F G +L VTD L
Sbjct: 264 NGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLS 323
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
E F S F ++ K++ D G S+G GFV F E TRA+ EMNG + +P+ V A
Sbjct: 324 ELF-SEFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPA 381
Query: 286 TPKK 289
K+
Sbjct: 382 QKKE 385
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
T ++G+L + E + F G VV+ V +++ T Q +GYGFVEF S A+ ++
Sbjct: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N M+ + R+N AS +++S ++L F+G+L DV + +L +TF +
Sbjct: 86 LN--MIKLYGKPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVI 138
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 292
+ K++ D +TG S+G+GF+ + A+ MNG + NR + V A K T G
Sbjct: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG 196
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL ++++ +++ F G+VVS +V R+ T +S GYG+V F + A + L
Sbjct: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 92
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T M N ++ R+ ++ R+S A +IF+ +L + L +TF S F
Sbjct: 93 LNFTPMNN--KSIRVMYSHRDPSSRKSGTA----NIFIKNLDKTIDHKALHDTFSS-FGQ 145
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I K+ D +G+SKGYGFV+F E+ A+ ++NG+ +++ + VG
Sbjct: 146 IMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVG 193
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L E+ + N F G + SA ++R+ G+S+ +GFV F + A K ++
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEAL 271
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAAT--------------SDLSIFVGDLAIDVTD 221
NG + D+ + + A ER E L++++ +L +TD
Sbjct: 272 NGKKV--DDKEWYVGKAQ-KKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 222 AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMR 281
L+E F S F +I K++ D N G S+G GFV F E +RA+ EMNG ++P+
Sbjct: 329 EKLKEMF-SEFGTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLY 386
Query: 282 VGVATPKK 289
V VA K+
Sbjct: 387 VAVAQRKE 394
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+ +D + F G V A+VI N+QT S G+GFV + AE ++ F
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 176 NGTMMPNTDQAFRLNWASFSAGER--RSEAATSD----LSIFVGDLAIDVTDAMLQETFG 229
NG ++ +N AS G R R+E A L I+V +LA +V ++ L++ F
Sbjct: 171 NG--YDYNGRSLVVNKAS-PKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF- 226
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
S I A+VV D TGRS+G+GFV DE E A+ ++G R +RV VA +
Sbjct: 227 SEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRP 286
Query: 290 TYG 292
G
Sbjct: 287 RRG 289
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++G+L + + + F G VVS +++ + T +S G+ FV + AE+ ++
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 174 NFNGTMMPNTDQAFRLNWASFS-AGERRSEAAT------SDLSIFVGDLAIDVTDAMLQE 226
F+GT + +A ++N+ G+R +T S I+ G+L D+T L++
Sbjct: 168 MFDGTTV--GGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
F + + AKVV + N G+S+GYGFV F + A++ MNGV RP+R+ +A
Sbjct: 226 AFAKQ-PGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLA 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++G+L + + + F G VVS +++ + T +S G+ FV + AE+ ++
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 174 NFNGTMMPNTDQAFRLNWASFS-AGERRSEAAT------SDLSIFVGDLAIDVTDAMLQE 226
F+GT + +A ++N+ G+R +T S I+ G+L D+T L++
Sbjct: 168 MFDGTTV--GGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
F + + AKVV + N G+S+GYGFV F + A++ MNGV RP+R+ +A
Sbjct: 226 AFAKQ-PGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLA 283
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 7/180 (3%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G+L +D + F +G V A+VI N+ T +S G+GFV + E+ + F
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAAT--SDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+G + + +N A+ R + T S L +VG+L DV ++ L++ F S
Sbjct: 184 SGFELDG--RLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLF-SEHG 240
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT--PKKTY 291
++ A+VV D TGRS+G+GFV +E E A+ ++G + R +RV VA P++++
Sbjct: 241 KVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERPRRSF 300
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 202 EAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
E + DL IFVG+L DV L + F + +++ A+V+ + +T RS+G+GFV
Sbjct: 116 EEPSEDLKIFVGNLPFDVDSEKLAQLF-EQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSE 174
Query: 262 ERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
E RA+ + +G R + V A P+ T
Sbjct: 175 EVERAVNKFSGFELDGRLLTVNKAAPRGT 203
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDLH + ++ +H+ F+ + S ++ R+ +G+S YG+V F S A + ++
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N + + +A R+ W+ R+S ++FV +LA + ++ L++ F +F +
Sbjct: 71 KNHSTL--NGKAIRVMWSRRDPDARKSCIG----NVFVKNLAESIDNSGLEDMF-KKFGN 123
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I +KVV+ S G+SKGYGFV+F E A+ +NG ++ + VG
Sbjct: 124 ILSSKVVM-SEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVG 171
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
I +++ +L +D + + + F G ++S+KV+ + + G+S+GYGFV+F + +A +
Sbjct: 97 IGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAI 155
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
+ NG ++ D+ + + S T ++++ +L +D+++ +L+E F S F
Sbjct: 156 ERLNGYLV--GDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSS-F 212
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
I V DSN G SKG+GFV F + + RAM MNG+ ++ + V A K
Sbjct: 213 GKIISLAVAKDSN-GMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKK 267
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 13/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + E + F+ G+++S V ++ G S+G+GFV F + A++ ++
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 176 NGTMMPNT--------DQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAMLQ 225
NG + + +A R E+R E +I+V ++ +V+D L+
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
+ F S +I AK++ D + G SKG+GFV F E +A+ +G +P+ V +A
Sbjct: 310 DHF-SVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLA 367
Query: 286 TPKK 289
K+
Sbjct: 368 QRKE 371
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ +++ F G+VVS +V R+ T +S GYG+V + + A + L
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P ++ R+ ++ R+S +IF+ +L + L +TF S F +
Sbjct: 95 LNFT--PLNNRPIRIMYSHRDPSIRKSGQG----NIFIKNLDKAIDHKALHDTFSS-FGN 147
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I KV +D +G+SKGYGFV+F E +A+ ++NG+ +++ + VG
Sbjct: 148 ILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVG 195
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L ++ + F G + SA V+R+ G+S+ +GFV F S A + ++
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEAL 273
Query: 176 NGTMMPNTD--------QAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAMLQ 225
NG + + + ++ R + + EAA +++V +L + D L+
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLK 333
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
E F S + +I KV+ D N G S+G GFV F E +RA+ EMNG +++P+ V +A
Sbjct: 334 ELFSS-YGTITSCKVMRDPN-GVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLA 391
Query: 286 TPKK 289
K+
Sbjct: 392 QRKE 395
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 96/172 (55%), Gaps = 8/172 (4%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
E ++++GDL +++ +++ F+ V+S +V R++ T S GYG+V + + A
Sbjct: 23 ENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANA 82
Query: 172 LQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 231
++N N +P + R+ ++ R++ A ++F+ +L + + L ETF S
Sbjct: 83 MENLN--YVPLNGKPIRIMFSHRDPLIRKTGFA----NLFIKNLETSIDNKALHETF-SV 135
Query: 232 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
F ++ KV +DSN G SKG+GFV+F ++ A+ +++G+ +++ + VG
Sbjct: 136 FGNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVG 186
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 118 LGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNG 177
L + + + D + N F V+++ +I G S+ +GFV F S +A ++ NG
Sbjct: 207 LSESYTYEDLKQLFNSFG----VITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNG 262
Query: 178 TMMPNTDQAF--RLNWASFSAGERRSEAATSDL---------SIFVGDLAIDVTDAMLQE 226
+ + F R S E ++ L ++++ ++ + + L+E
Sbjct: 263 STTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKE 322
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
F S F +I KV+ D+ GRSKG GFV F E ++A+ EMNG +P+ V VA
Sbjct: 323 LF-SEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQ 380
Query: 287 PKK 289
K+
Sbjct: 381 RKE 383
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 10/163 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+ +D + F G V A+VI N+QT S G+GFV + AE ++ F
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 176 NGTMMPNTDQAFRLNWASFSAGER--RSEAATSD----LSIFVGDLAIDVTDAMLQETFG 229
NG ++ +N AS G R R+E A L I+V +LA +V ++ L++ F
Sbjct: 171 NG--YDYNGRSLVVNKAS-PKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF- 226
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
S I A+VV D TGRS+G+GFV DE E A+ ++G
Sbjct: 227 SEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 8/177 (4%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
++ G+L + +D + G +V+ ++ TG+S G+ FV V+QN
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEA--ATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+G + R+N FS + E ++ +FVG+LA VT L + F
Sbjct: 175 DGKEF--MGRTLRVN---FSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAF-QEHG 228
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
++ GA+V+ D TG+S+GYGFV + ++E A+ M+ V R +RV +A K++
Sbjct: 229 TVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGKRS 285
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL ++E + + F+ +VVS +V R++ S GY +V F + A +
Sbjct: 31 SLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKEL 90
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P ++ R+ ++ R+S + ++F+ +L + L +TF + F
Sbjct: 91 LNFT--PLNEKPIRIMFSQRDPSVRKSGSG----NVFIKNLDTSIDHKALHDTFAA-FGP 143
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
+ KV +D N G+SKGYGFV+F +E A+ +++G+ +++ + VG
Sbjct: 144 VLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVG 191
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ ++ + + F G + SA V+++ G+S +GFV F S +A ++
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATS-------------DLSIFVGDLAIDVTDA 222
NGT + N D+ + A A ER +E ++++ +L D +
Sbjct: 270 NGTAI-NDDKVLFVGRAQRKA-ERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEE 327
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L++ F S F ++ +V++DS+ G SKG GFV F E +A+ EMNG +P+ V
Sbjct: 328 KLKDLF-SEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFV 385
Query: 283 GVATPKK 289
VA K+
Sbjct: 386 AVAQRKE 392
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL ++E + + F+ +VVS +V R++ S GY +V F + A +
Sbjct: 31 SLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKEL 90
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P ++ R+ ++ R+S + ++F+ +L + L +TF + F
Sbjct: 91 LNFT--PLNEKPIRIMFSQRDPSVRKSGSG----NVFIKNLDTSIDHKALHDTFAA-FGP 143
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
+ KV +D N G+SKGYGFV+F +E A+ +++G+ +++ + VG
Sbjct: 144 VLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVG 191
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ ++ + + F G + SA V+++ G+S +GFV F S +A ++
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATS-------------DLSIFVGDLAIDVTDA 222
NGT + N D+ + A A ER +E ++++ +L D +
Sbjct: 270 NGTAI-NDDKVLFVGRAQRKA-ERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEE 327
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L++ F S F ++ +V++DS+ G SKG GFV F E +A+ EMNG +P+ V
Sbjct: 328 KLKDLF-SEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFV 385
Query: 283 GVATPKK 289
VA K+
Sbjct: 386 AVAQRKE 392
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 92/186 (49%), Gaps = 14/186 (7%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
D+ +++G+L M + + + FA G VVS +++ ++ T +S G+ FV S A++
Sbjct: 106 DDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKE 165
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAAT-----------SDLSIFVGDLAIDV 219
++ F+G+ + ++ ++N+ G R S I+ G+L +
Sbjct: 166 AIRMFDGSQV--GGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGM 223
Query: 220 TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRP 279
L++ F + + GAK++ + + GRS+G+GFV F A+ MNGV RP
Sbjct: 224 NSQDLRDAFDEQ-PGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRP 282
Query: 280 MRVGVA 285
+R+ +A
Sbjct: 283 LRLNLA 288
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
T+++GDLH + + ++ F+ ++SA+V ++ TG+S YG+V S A + ++
Sbjct: 16 TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIEL 75
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N + + + R+ W S A R+S ++FV +LA + + L + F ++ +
Sbjct: 76 KNHSSL--NGKVIRVMWLSRDADARKSGKG----NVFVKNLAASIDNVGLHDLF-QKYGN 128
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
I +K+ S G+SKG+G+++F E A+ +MNG ++ + VG
Sbjct: 129 ILSSKIA-RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVG 176
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 15/178 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D +H+ F G ++S+K+ R+ + G+S+G+G+++F S +A +Q
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDL-----SIFVGDLAIDVTDAMLQETFGS 230
NG+ + + ++ F R+SE + DL +++V +L VT+ L E F S
Sbjct: 164 NGSTVRDK----QIYVGKFI---RKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSS 216
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
F I + D N G+SKG+GFV + ++ RAM M+G ++ + V A K
Sbjct: 217 -FGKIVSLAIKKDEN-GQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK 272
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 198 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRF 257
E+ + A+ +++VGDL DVTDA L + F S F+++ A+V DS TG+S YG+V
Sbjct: 5 EKDAVPASPAATLYVGDLHSDVTDAQLYKAF-SEFNTLISARVCKDSATGKSLCYGYVNL 63
Query: 258 GDENERTRAMTEMNGVFCSNRPMRV 282
E RA+ N + + +RV
Sbjct: 64 SSHQEAIRAIELKNHSSLNGKVIRV 88
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 201 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 260
+E D +F GDL +V D +L + F +RF S A+VV D TG++KGYGF+ F +
Sbjct: 125 AEWPEDDYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANP 183
Query: 261 NERTRAMTEMNGVFCSNRPMRV 282
+ A+ EMNG + NRP+++
Sbjct: 184 ADLAAALKEMNGKYVGNRPIKL 205
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D + F + G+V +VI +K TG+S G+GFV S A E Q
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 176 NGTMM-------------PNTDQAFRLNWASFSAGER-----RSEAATSDLSIFVGDLAI 217
NG ++ P + R G+R R ++ D + VG+LA
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 218 DVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSN 277
V + L+ FG + + AKV+ D +GRS+G+GFV F +E A+ ++G +
Sbjct: 206 GVDNLALESLFGEQ-GQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 278 RPMRVGVAT--PKKTY 291
R +RV A PK+ +
Sbjct: 265 RAIRVSPADSRPKRQF 280
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D + F + G+V +VI +K TG+S G+GFV S A E Q
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 176 NGTMM-------------PNTDQAFRLNWASFSAGER-----RSEAATSDLSIFVGDLAI 217
NG ++ P + R G+R R ++ D + VG+LA
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 218 DVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSN 277
V + L+ FG + + AKV+ D +GRS+G+GFV F +E A+ ++G +
Sbjct: 206 GVDNLALESLFGEQ-GQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 278 RPMRVGVAT--PKKTY 291
R +RV A PK+ +
Sbjct: 265 RAIRVSPADSRPKRQF 280
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + FA GEV+ A ++R++ TG++ G+GFV F A AE+V
Sbjct: 4 DLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERV 63
Query: 172 LQN---FNG------TMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDA 222
+ + +G +P DQ +N + S + S IFVG L +T++
Sbjct: 64 IIDKHIIDGRTVEAKKAVPRDDQQ-NINRQTGSV--QGSPGPGRTKKIFVGGLPSTITES 120
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNR 278
+ F +F +I V+ D NT R +G+GF+ + E R + E+NG +
Sbjct: 121 DFKMYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG-----K 174
Query: 279 PMRVGVATPKK 289
+ V A PK+
Sbjct: 175 MVEVKRAVPKE 185
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + FA GEV+ A ++R++ TG++ G+GFV F A AE+V
Sbjct: 4 DLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERV 63
Query: 172 LQN---FNG------TMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDA 222
+ + +G +P DQ +N + S + S IFVG L +T++
Sbjct: 64 IIDKHIIDGRTVEAKKAVPRDDQQ-NINRQTGSV--QGSPGPGRTKKIFVGGLPSTITES 120
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNR 278
+ F +F +I V+ D NT R +G+GF+ + E R + E+NG +
Sbjct: 121 DFKMYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG-----K 174
Query: 279 PMRVGVATPKK 289
+ V A PK+
Sbjct: 175 MVEVKRAVPKE 185
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ-- 173
+++G + +E + F+ GEV A +++++ TG++ G+GFV F A A+ V+Q
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 174 -NFNGTM------MPNTDQAFRLNWASFSAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQ 225
N +G M +P DQ N S ++G S IFVG LA VT++ +
Sbjct: 68 HNIDGRMVEAKKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMR 281
+ F +F +I V+ D NT R +G+GF+ + E + + E+NG + +
Sbjct: 124 KYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG-----KMVE 177
Query: 282 VGVATPKK 289
V A PK+
Sbjct: 178 VKRAVPKE 185
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ-- 173
+++G + +E + F+ GEV A +++++ TG++ G+GFV F A A+ V+Q
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 174 -NFNGTM------MPNTDQAFRLNWASFSAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQ 225
N +G M +P DQ N S ++G S IFVG LA VT++ +
Sbjct: 68 HNIDGRMVEAKKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMR 281
+ F +F +I V+ D NT R +G+GF+ + E + + E+NG + +
Sbjct: 124 KYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG-----KMVE 177
Query: 282 VGVATPKK 289
V A PK+
Sbjct: 178 VKRAVPKE 185
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 140 VVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAF--RLNWASFSAG 197
V+++ VI + G S+ +GFV F S +A ++ NGT + + R
Sbjct: 130 VITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREA 189
Query: 198 ERRSEAATSDL---------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGR 248
E R++ + ++++ +L + D L+E F S F +I KV+ D++ G
Sbjct: 190 ELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMF-SEFGTITSCKVMFDAH-GH 247
Query: 249 SKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
SKG+GFV F E ++A+ M+G +P+ V VA K+
Sbjct: 248 SKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQRKE 288
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D +H+ FA G V+S KV + G+S GYGFV++ + +A+ ++
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCAIEKL 75
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLS-IFVGDLAIDVTDAMLQETFGSRFSS 234
+G M+ +AF F + RSE + + ++V +L TD L++ F S +
Sbjct: 76 DG-MLIKDKKAF---VGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLF-STYGV 130
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
I A ++ D N G SK +GFV F + A+ ++NG
Sbjct: 131 ITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEKLNG 167
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + +E+ + F + G+VV A +++++ TG++ G+GFV F + AE+V+
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 176 N---------GTMMPNTDQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAML 224
+ +P DQ S S G S A T IFVG LA VT++
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHG---SPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPM 280
+ F +F +I V+ D NT R +G+GF+ + E + + E+NG + +
Sbjct: 123 KNYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-----KMV 176
Query: 281 RVGVATPK 288
V A PK
Sbjct: 177 EVKRAVPK 184
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + +E+ + F + G+VV A +++++ TG++ G+GFV F + AE+V+
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 176 N---------GTMMPNTDQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAML 224
+ +P DQ S S G S A T IFVG LA VT++
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHG---SPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPM 280
+ F +F +I V+ D NT R +G+GF+ + E + + E+NG + +
Sbjct: 123 KNYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-----KMV 176
Query: 281 RVGVATPK 288
V A PK
Sbjct: 177 EVKRAVPK 184
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + +E+ + F + G+VV A +++++ TG++ G+GFV F + AE+V+
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 176 N---------GTMMPNTDQAFRLNWASFSAGERRSEAATS--DLSIFVGDLAIDVTDAML 224
+ +P DQ S S G S A T IFVG LA VT++
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHG---SPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPM 280
+ F +F +I V+ D NT R +G+GF+ + E + + E+NG + +
Sbjct: 123 KNYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-----KMV 176
Query: 281 RVGVATPK 288
V A PK
Sbjct: 177 EVKRAVPK 184
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 134 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 193
F GE+ + ++++++TGQ G+GF+ + + +KV+++ + + + +
Sbjct: 65 FGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPRGA 124
Query: 194 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 253
+ + R++ IFVG + +VT+ ++ F +R+ +K +++ D +T RS+G+G
Sbjct: 125 VGSKDFRTK------KIFVGGIPSNVTEDEFRDFF-TRYGEVKDHQIMRDHSTNRSRGFG 177
Query: 254 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
FV F E ++ N + + + + A PKK
Sbjct: 178 FVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKK 213
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
G +++G + E + F G VV +I++++TGQ +G F+++ + A+
Sbjct: 84 GGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEAD 143
Query: 170 KVLQNF-NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETF 228
+ ++ N +P ++ +A GER A + +FVG L + ++E F
Sbjct: 144 QAIRALHNRHTLPGGVGPIQVRYAD---GERERLGAV-EYKLFVGSLNKQASVKEVEEVF 199
Query: 229 GSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVA 285
S++ I+ ++ D +S+G GFV++ + A+ +NG++ +P+ V A
Sbjct: 200 -SKYGRIEDVYLMRDDQK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFA 257
Query: 286 TPKKT 290
PK+
Sbjct: 258 DPKRP 262
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S+ V +L+ D + L E FG+ F S+ V ID NTG S+G+GFV F + + RA+
Sbjct: 200 SVRVTNLSEDTREPDLHELFGT-FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 269 EMNGVFCSNRPMRVGVATPKKT 290
++NG N ++V ATP+ T
Sbjct: 259 KLNGYGYDNLILKVEWATPRTT 280
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
+R +++G++ + + + G V A+V+ +K + +S + FV + A
Sbjct: 59 LRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAA 118
Query: 173 QNFNGTMMPN-------TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQ 225
+ NGT + T++ AGE S S ++VG+LA +VT L+
Sbjct: 119 EKLNGTEIGGREIKVNITEKPLTTEGLPVQAGE--STFVDSPYKVYVGNLAKNVTSDSLK 176
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
+ F + +++ AKV T +S G+GFV F + + A++ N + +RV A
Sbjct: 177 KFFSEKGNAL-SAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 202 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 261
Query: 174 NFNGTMM--------PNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQ 225
+G ++ P+ + + + S D ++VG+L ++T+A L+
Sbjct: 262 -LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLR 320
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF-CSNRPMRVGV 284
E F F I+ ++ +D TG KG+GFV+F E +A +NG + R ++V
Sbjct: 321 EIFEP-FGQIEVVQLPLDMETGHCKGFGFVQFA-HLEHAKAAQSLNGKLEIAGRTIKVSS 378
Query: 285 AT 286
T
Sbjct: 379 VT 380
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 208 LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM 267
+FVG L+ T+ L + F S + + AKV+ D + +SKGYGFV F ++E +A+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAF-SNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAI 90
Query: 268 TEMNGVFCSNRPMRVGVATP 287
TEMN + R + V A P
Sbjct: 91 TEMNEKALNGRVVFVDYAKP 110
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 206 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
S +F+G ++ + L+E F SR+ + AK+++D +TGRS+G+GF+ F E +
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 266 AMTEMNGVFCSNRPMRVGVATPKKTYG 292
A+ M+ R +RV AT + G
Sbjct: 97 ALQAMDNKELDGRTVRVNYATERARPG 123
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 206 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
S +F+G ++ + L+E F SR+ + AK+++D +TGRS+G+GF+ F E +
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 266 AMTEMNGVFCSNRPMRVGVATPKKTYG 292
A+ M+ R +RV AT + G
Sbjct: 97 ALQAMDNKELDGRTVRVNYATERARPG 123
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 206 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
S +F+ L+ + + +L++TF + I KV+ + TG SKGYGFVRF E
Sbjct: 31 SSTKLFIAGLSYNTNETVLRDTF-EQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 266 AMTEMNGVFCSNRPMRVGVA 285
A E++G R +RVG A
Sbjct: 90 ARKELHGQIVDGRRIRVGYA 109
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 206 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
S ++VG ++ DA L+E+F +R+ + A+V+ID GRSKG+GFV F E +
Sbjct: 38 SSAKLYVGGISYSTDDAGLRESF-ARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASA 96
Query: 266 AMTEMNGVFCSNRPMRVGVATPK 288
A+ M+ R +RV A +
Sbjct: 97 ALQAMDNQELHGRTVRVNYAQER 119
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 215 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 174 NFNGTMM--------PNTDQA--FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAM 223
+G ++ P+ + + N + +AG A D ++VG+L ++T++
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAV-DRKLYVGNLHFNMTESQ 332
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
L+E F F +++ ++ +D TG KG+GF++F E +A +NG
Sbjct: 333 LREIF-EPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 215 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 174 NFNGTMM--------PNTDQA--FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAM 223
+G ++ P+ + + N + +AG A D ++VG+L ++T++
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAV-DRKLYVGNLHFNMTESQ 332
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
L+E F F +++ ++ +D TG KG+GF++F E +A +NG
Sbjct: 333 LREIF-EPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 215 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 174 NFNGTMM--------PNTDQA--FRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAM 223
+G ++ P+ + + N + +AG A D ++VG+L ++T++
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAV-DRKLYVGNLHFNMTESQ 332
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
L+E F F +++ ++ +D TG KG+GF++F E +A +NG
Sbjct: 333 LREIF-EPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
GD +++G + ++ E+ +H+ F G + + TG+ G + F + A A+
Sbjct: 216 GDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAK 275
Query: 170 KVLQNFNGTMM--------P-NTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVT 220
+ L +G M P QA R G R I+VG L+ ++T
Sbjct: 276 RALA-LDGADMGGLFLKIQPCKATQATRFT-PEMKEGYNR---------IYVGSLSWEIT 324
Query: 221 DAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPM 280
+ L++ F + ++K ++ +D TG +GY V FGD A+ ++ RP+
Sbjct: 325 EEELRKFFSN--CNVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALA-LDQSVLFGRPV 381
Query: 281 RVGVATP 287
R+ A P
Sbjct: 382 RISCAVP 388
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG L+ V + L++ F S F + ++V D ++GR++G+GFV F +E+ A
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSS-FGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 270 MNGVFCSNRPMRVGVATPK 288
M+G RP+R+ A K
Sbjct: 97 MDGKALLGRPLRINFALEK 115
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + + DEN + F+ GEV+ A++I +++TG+S G+GF+ F S A +Q
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 176 NGTMMPNTDQAFRLNWAS 193
+G + + R+N+A+
Sbjct: 104 DGQDLHG--RRVRVNYAN 119
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G ++ + L+E F SR+ + A++++D TGRS+G+GF+ F E + A+
Sbjct: 44 LFIGGVSYSTDENSLREAF-SRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 270 MNGVFCSNRPMRVGVATPK 288
++G R +RV A +
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA L++ F S+F I +KV+ D TGRS+G+GFV F +E A+ EM
Sbjct: 11 FVGGLAWATDSQALEQAF-SKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 70 NGQDIDGRNITVNEA 84
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 205 TSDLSIFVGDLAIDV-TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 263
T+ +FVG LA + TD M T+ +F I A ++ D NTG+SKGYGFV F D
Sbjct: 13 TTFTKVFVGGLAWETPTDEM--RTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESA 70
Query: 264 TRAMTEMNGVFCSNR 278
RA + N V R
Sbjct: 71 RRACADPNPVIDGRR 85
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ +V D L++ F + + + A+V+ D TGRS+G+GFV F E T A++
Sbjct: 38 LFIGGLSYNVDDQSLRDAF-TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
Query: 270 MNGVFCSNRPMRVGVATPKK 289
M+G + R +RV A ++
Sbjct: 96 MDGQDLNGRNIRVSYANDRQ 115
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G L + +D+ + + F G+VV A+VI +++TG+S G+GFV F S +A L
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSMD 97
Query: 173 -QNFNG 177
Q+ NG
Sbjct: 98 GQDLNG 103
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + ++ F +F I A V+ D NTGRSKGYGFV F D
Sbjct: 26 TTYTKVFVGGLAWETQSETMRRYF-EQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 265 RAMTEMNGVFCSNR 278
RA + + V R
Sbjct: 85 RACADPSPVIDGRR 98
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + ++ F +F I A V+ D NTGRSKGYGFV F D
Sbjct: 26 TTYTKVFVGGLAWETQSETMRRYF-EQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 265 RAMTEMNGVFCSNR 278
RA + + V R
Sbjct: 85 RACADPSPVIDGRR 98
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 130 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 189
+ + F G V+ ++I++K G+ +GY FV S A+ + FN T + + + R+
Sbjct: 112 IKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKFNATEI--SGRILRV 168
Query: 190 NWAS----FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 245
+A + I+ +LA L++ F F + A+VV
Sbjct: 169 EFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQVP 228
Query: 246 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
G+S GYGFV + E E A++ + G RP+ V ++ K
Sbjct: 229 GGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERK 271
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAH---TGEVVSAKVIRNKQTGQ--SEGYGFVEFYSRA 166
E R++++ +L+ + + F+ G ++S KV ++ + G+ S G+GFVEF S
Sbjct: 639 EARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTE 698
Query: 167 TAEKVLQNFNGTMMPNTDQAFRLNWASFSAG--ERRSEAATSDLSIFVGDLAIDVTDAML 224
TA V + GT++ +L +++ E S + V ++A + T+ L
Sbjct: 699 TATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKDL 758
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGV 284
++ F S F IK ++ + G +G+ FV + + E A+T ++ R + +
Sbjct: 759 RQLF-SPFGQIKSLRLPM--KFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIER 815
Query: 285 A 285
A
Sbjct: 816 A 816
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN- 174
+++G + +E + F++ G+V++ V+R K TG+ G+GFV F + ++VL++
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 175 --FNGTMMPNTDQAFR----------------LNWASFSAGERRSEAATSDLSIFVGDLA 216
+G + + +AF S + G R++ IFVG L
Sbjct: 68 HVIDGRTV-DAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTK------KIFVGGLP 120
Query: 217 IDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM 267
+ + ++ F + + V+ D NTGR +G+GF+ F E R +
Sbjct: 121 PTLAEEKFRQYF-EAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVL 170
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN- 174
+++G + +E + F++ G+V++ V+R K TG+ G+GFV F + ++VL++
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 175 --FNGTMMPNTDQAFR----------------LNWASFSAGERRSEAATSDLSIFVGDLA 216
+G + + +AF S + G R++ IFVG L
Sbjct: 68 HVIDGRTV-DAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTK------KIFVGGLP 120
Query: 217 IDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM 267
+ + ++ F + + V+ D NTGR +G+GF+ F E R +
Sbjct: 121 PTLAEEKFRQYF-EAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVL 170
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 134 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 193
F GE+ + +++++ TG+ G+GF+ + + ++V+Q N + D+ +
Sbjct: 38 FERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE-NHII---NDKQVEIKRTI 93
Query: 194 FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYG 253
+ ++ T IFVG + V++ L+ F S+ ++ +++ D T RS+G+G
Sbjct: 94 PKGASQTNDFKTK--KIFVGGIPATVSEDELK-IFFSKHGNVVEHEIIRDHTTKRSRGFG 150
Query: 254 FVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
FV F + + + N + + + + A PKK
Sbjct: 151 FVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
IFV LA T+ L E F S++ ++ A +V++ R KG+G+V F +E E +A
Sbjct: 33 KIFVKGLAFSTTEEKLAEAF-SQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 269 EMNGVFCSNRPMRVGVATP 287
MNG R + V + P
Sbjct: 92 GMNGKILHGRVLYVDMDPP 110
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
+++VG LA +V +++L F F IK K +D T + + +GFV F + + + AM
Sbjct: 11 TLYVGGLAEEVNESILHAAFIP-FGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 269 EMNGVFCSNRPMRVGVATPKKTYG 292
M+G R + V A P+K G
Sbjct: 70 NMDGAELYGRVLTVNYALPEKIKG 93
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S+ V +L+ D + L E F F ++ V ID TG S+G+GFV F + RA+
Sbjct: 212 SVRVTNLSEDTREPDLLELFRP-FGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAIN 270
Query: 269 EMNGVFCSNRPMRVGVATPKKT 290
++NG N +RV ATP+ T
Sbjct: 271 KLNGYGYDNLILRVEWATPRTT 292