Miyakogusa Predicted Gene

Lj4g3v0575060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0575060.1 Non Characterized Hit- tr|I0YM07|I0YM07_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,35.88,1e-17,coiled-coil,NULL; ZF_MATRIN,Zinc finger, C2H2-type
matrin; U1-like zinc finger,Zinc finger, U1-type;,CUFF.47596.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g086640.1 | nucleic acid-binding protein | HC | chr4:33958...   238   1e-63

>Medtr4g086640.1 | nucleic acid-binding protein | HC |
           chr4:33958713-33953836 | 20130731
          Length = 245

 Score =  238 bits (607), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/133 (85%), Positives = 121/133 (90%), Gaps = 1/133 (0%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGTRHKDNVAKRLAAMRKENTAKEKEHKE 60
           MTEYWVSQGNKWCD CKIYISNNPSSIRNHELGTRHK+NV KRLA MRKEN AK+KEHKE
Sbjct: 1   MTEYWVSQGNKWCDVCKIYISNNPSSIRNHELGTRHKENVTKRLATMRKENAAKDKEHKE 60

Query: 61  TAQALEQIEAKAQRSYQKDKAKLEEAREWHELDAE-EWDFESSSGYYYHKTNGFYYDPKS 119
           TA AL QIEAKA+RSY KDKAK EEARE HELD++ EW+F+SSSGYYYHKTNGF YD KS
Sbjct: 61  TANALVQIEAKAERSYLKDKAKFEEARESHELDSQGEWEFDSSSGYYYHKTNGFCYDQKS 120

Query: 120 GFYYSDAIGKWVT 132
           GFYYSDAIGKWVT
Sbjct: 121 GFYYSDAIGKWVT 133