Miyakogusa Predicted Gene

Lj4g3v0573940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0573940.1 CUFF.47585.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain pro...   429   e-120
Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain pro...   188   6e-48
Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain pro...   162   5e-40
Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain pro...   157   1e-38
Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain pro...   144   8e-35
Medtr8g071890.1 | hydrolase of sodium-potassium ATPase alpha sub...   105   5e-23
Medtr8g071890.2 | hydrolase of sodium-potassium ATPase alpha sub...   105   5e-23
Medtr5g057940.1 | hypothetical protein | HC | chr5:23916116-2391...   103   1e-22
Medtr5g057940.2 | hypothetical protein | HC | chr5:23916116-2392...   103   2e-22

>Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr4:34040137-34037050 | 20130731
          Length = 404

 Score =  429 bits (1104), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/281 (78%), Positives = 242/281 (86%), Gaps = 2/281 (0%)

Query: 1   MSLLANESFQKQMHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXX 60
           +SLLANESFQKQM+KDPEGYVPITVIASTKK+KSL++NIHLLTQA+R+            
Sbjct: 114 LSLLANESFQKQMNKDPEGYVPITVIASTKKIKSLVNNIHLLTQAIRHSSKLVLSADGKK 173

Query: 61  XXRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRP 120
             RKHPF +KEKE+L SRTVVAENLPDDHSHQNLQKIF VVGS+KTIRICHPQEPNSSRP
Sbjct: 174 VKRKHPFAEKEKEELMSRTVVAENLPDDHSHQNLQKIFGVVGSIKTIRICHPQEPNSSRP 233

Query: 121 KCEFLISNKLHALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKSRKSDF 180
           K +FLISNKLHALVEYE+ D+A+KAVEKLNDERNWRKGMRVRLLLRCSPKSVLK+RKS+F
Sbjct: 234 KGDFLISNKLHALVEYESSDVADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKNRKSEF 293

Query: 181 DGYLDDEEILNSEATEDSSHPNNTELS--DNVDENSAGSKKGWARGHGKGRGRTQNHTGR 238
           DGYLDD+E L+SE  EDSSHPNNTEL    N DE S GSKKGW RG GKGRGRTQNHTGR
Sbjct: 294 DGYLDDDENLHSETAEDSSHPNNTELCVESNGDETSVGSKKGWTRGRGKGRGRTQNHTGR 353

Query: 239 GLLAPPSQTSNHVPCEVSTIKITKGPRMPDGTRGFAMGRGK 279
           GLLAPPS +S+ V  EVST    KGPRMPDGTRGFA+GRGK
Sbjct: 354 GLLAPPSPSSSVVLGEVSTKPNAKGPRMPDGTRGFAIGRGK 394


>Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr7:48763422-48774734 |
           20130731
          Length = 440

 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 168/311 (54%), Gaps = 38/311 (12%)

Query: 1   MSLLANESFQKQMHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXX 60
           ++L   +   + ++KDPEG+VPI+V+AS KK+K+LI++   L   LRN            
Sbjct: 129 LNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQLANVLRNSSKLVVSEDGKK 188

Query: 61  XXRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRP 120
             R++  T+ + E+LQSR V+AENLP+DH HQNL K+FS VGSVKTIR C PQ  N+   
Sbjct: 189 IKRQYSPTESDIEELQSRIVIAENLPEDHCHQNLMKVFSAVGSVKTIRTCPPQTSNNGTS 248

Query: 121 KCE-------FLISNKLHALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSVL 173
                       + NKLHA VEYE+ ++AE+AV +LNDE NWR G+RVRL+LR + K   
Sbjct: 249 SASRSGKVDGIPLHNKLHAFVEYESVELAERAVTELNDEGNWRSGLRVRLMLRRTSKPTP 308

Query: 174 KSRKSDFDGYLDDEEIL--------NSEATEDSSHPNNTELSDNVDENSAGSKKGWARGH 225
              +   D  +  EE          N +  ED+S P + +L ++     AG + G+ +  
Sbjct: 309 GRGRKGLDVEVSCEEDYTSVPEPQTNEKELEDASFP-DAQLHEH-----AGEEHGYEKES 362

Query: 226 GKGRG----------------RTQNHTGRGLLAPPSQTSNHVPCEVSTIK-ITKGPRMPD 268
           G+ +G                +  N     L   PS +S     +V   K    GPRMP+
Sbjct: 363 GQRKGGRGRGRTKGRGRVHCHQNNNRANHHLGTSPSNSSFFTDQQVVAAKQPPPGPRMPN 422

Query: 269 GTRGFAMGRGK 279
           GTRGF+MGRGK
Sbjct: 423 GTRGFSMGRGK 433


>Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr7:48763422-48773797 |
           20130731
          Length = 363

 Score =  162 bits (409), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 9/184 (4%)

Query: 1   MSLLANESFQKQMHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXX 60
           ++L   +   + ++KDPEG+VPI+V+AS KK+K+LI++   L   LRN            
Sbjct: 129 LNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQLANVLRNSSKLVVSEDGKK 188

Query: 61  XXRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRP 120
             R++  T+ + E+LQSR V+AENLP+DH HQNL K+FS VGSVKTIR C PQ  N+   
Sbjct: 189 IKRQYSPTESDIEELQSRIVIAENLPEDHCHQNLMKVFSAVGSVKTIRTCPPQTSNNGTS 248

Query: 121 KCE-------FLISNKLHALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLR--CSPKS 171
                       + NKLHA VEYE+ ++AE+AV +LNDE NWR G+RVRL+LR    PK 
Sbjct: 249 SASRSGKVDGIPLHNKLHAFVEYESVELAERAVTELNDEGNWRSGLRVRLMLRRTVYPKH 308

Query: 172 VLKS 175
           +  S
Sbjct: 309 LFSS 312


>Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr7:48763422-48774734 |
           20130731
          Length = 424

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 156/307 (50%), Gaps = 46/307 (14%)

Query: 1   MSLLANESFQKQMHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXX 60
           ++L   +   + ++KDPEG+VPI+V+AS KK+K+LI++   L   LRN            
Sbjct: 129 LNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQLANVLRNSSKLVVSEDGKK 188

Query: 61  XXRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPN---S 117
             R++  T+ + E+LQSR V+AENLP+DH HQNL K+FS VGSVKTIR C PQ  N   S
Sbjct: 189 IKRQYSPTESDIEELQSRIVIAENLPEDHCHQNLMKVFSAVGSVKTIRTCPPQTSNNGTS 248

Query: 118 SRPKCEFLISNKLHALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKSRK 177
           S  +   +    LH              V +LNDE NWR G+RVRL+LR + K      +
Sbjct: 249 SASRSGKVDGIPLH------------NKVTELNDEGNWRSGLRVRLMLRRTSKPTPGRGR 296

Query: 178 SDFDGYLDDEEIL--------NSEATEDSSHPNNTELSDNVDENSAGSKKGWARGHGKGR 229
              D  +  EE          N +  ED+S P + +L ++     AG + G+ +  G+ +
Sbjct: 297 KGLDVEVSCEEDYTSVPEPQTNEKELEDASFP-DAQLHEH-----AGEEHGYEKESGQRK 350

Query: 230 G----------------RTQNHTGRGLLAPPSQTSNHVPCEVSTIK-ITKGPRMPDGTRG 272
           G                +  N     L   PS +S     +V   K    GPRMP+GTRG
Sbjct: 351 GGRGRGRTKGRGRVHCHQNNNRANHHLGTSPSNSSFFTDQQVVAAKQPPPGPRMPNGTRG 410

Query: 273 FAMGRGK 279
           F+MGRGK
Sbjct: 411 FSMGRGK 417


>Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr2:6438990-6443888 | 20130731
          Length = 406

 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 141/272 (51%), Gaps = 17/272 (6%)

Query: 18  EGYVPITVIASTKKVKSLISNIHLLTQALRNXXXXXXXXXXXXXXRKHPFTDKEKEDLQS 77
           EG+VPI  IAS +K+K L  +   +  AL+               R +P    E +D + 
Sbjct: 135 EGFVPIPAIASFRKMKRLTRDHLFIAAALKESSLLVVSGDGKRVKRLNPLRFNEVKDHKL 194

Query: 78  RTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRP--KCEFLISNKLHALVE 135
            TV+AENLP+DHS +N+++IF + G++K + I  P+   +S    K +  I +KLHALVE
Sbjct: 195 YTVLAENLPEDHSRENIRQIFQIAGNIKKLTINDPRSTAASAKHIKQDKFIGSKLHALVE 254

Query: 136 YETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSV-----LKSRKSDFDGYLDDEEIL 190
           YET + AEKAV  LN+E +WR GMRV+ L R + K V     LK   S+ +G     E  
Sbjct: 255 YETIEGAEKAVAMLNNEEDWRNGMRVKFLSRMAVKYVQKKQPLKGSNSEKNGSSHVSEKT 314

Query: 191 NSEATEDSSHPNNTELSDNVDENSAGSKKGWARGHGKGRGRTQNHTGRGLLAPPSQTSNH 250
             E     SH +  ++    D       KG  R   +GR R Q +     +     +S  
Sbjct: 315 GDEENH-GSHEHREDMPVVEDGEHVSKDKGGQRNSKQGRSRKQKYRATNGMGHGGTSS-- 371

Query: 251 VPCEVSTIKITK---GPRMPDGTRGFAMGRGK 279
               + T + +K   GP+MPDGTRGFA+GRG+
Sbjct: 372 ----IRTTEPSKPPPGPKMPDGTRGFAIGRGR 399


>Medtr8g071890.1 | hydrolase of sodium-potassium ATPase alpha
           subunit, putative | HC | chr8:30340315-30344546 |
           20130731
          Length = 179

 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/54 (90%), Positives = 52/54 (96%)

Query: 76  QSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRPKCEFLISNK 129
           QSRTVVAENLPDDHSHQNLQKIF++V SVKTIRICHPQEPNSSRPK +FLISNK
Sbjct: 91  QSRTVVAENLPDDHSHQNLQKIFAIVESVKTIRICHPQEPNSSRPKGDFLISNK 144


>Medtr8g071890.2 | hydrolase of sodium-potassium ATPase alpha
           subunit, putative | HC | chr8:30340315-30344470 |
           20130731
          Length = 179

 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/54 (90%), Positives = 52/54 (96%)

Query: 76  QSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRPKCEFLISNK 129
           QSRTVVAENLPDDHSHQNLQKIF++V SVKTIRICHPQEPNSSRPK +FLISNK
Sbjct: 91  QSRTVVAENLPDDHSHQNLQKIFAIVESVKTIRICHPQEPNSSRPKGDFLISNK 144


>Medtr5g057940.1 | hypothetical protein | HC |
           chr5:23916116-23918232 | 20130731
          Length = 163

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 54/58 (93%)

Query: 76  QSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRPKCEFLISNKLHAL 133
           +SRTVVAENLPDDHSHQNLQKIF++V SVKTIRICHPQEPNSSRPK +FLISNK+  +
Sbjct: 56  ESRTVVAENLPDDHSHQNLQKIFAIVESVKTIRICHPQEPNSSRPKGDFLISNKVQKI 113


>Medtr5g057940.2 | hypothetical protein | HC |
           chr5:23916116-23920207 | 20130731
          Length = 144

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/54 (88%), Positives = 52/54 (96%)

Query: 76  QSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRPKCEFLISNK 129
           +SRTVVAENLPDDHSHQNLQKIF++V SVKTIRICHPQEPNSSRPK +FLISNK
Sbjct: 56  ESRTVVAENLPDDHSHQNLQKIFAIVESVKTIRICHPQEPNSSRPKGDFLISNK 109