Miyakogusa Predicted Gene

Lj4g3v0523550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0523550.1 Non Characterized Hit- tr|A5BRP5|A5BRP5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,80.95,0.000000000002,5'-3' exonuclease,5'-3' exonuclease,
N-terminal; Helix-hairpin-helix class 2 (Pol1 family)
mo,Helix-,CUFF.47566.1
         (430 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g087250.1 | DNA polymerase I-like protein | HC | chr4:3421...   652   0.0  
Medtr6g033525.1 | 5'-3' exonuclease-like protein | HC | chr6:108...    84   2e-16
Medtr6g033525.2 | 5'-3' exonuclease-like protein | HC | chr6:108...    81   2e-15

>Medtr4g087250.1 | DNA polymerase I-like protein | HC |
           chr4:34214391-34203894 | 20130731
          Length = 439

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/441 (78%), Positives = 373/441 (84%), Gaps = 13/441 (2%)

Query: 1   MACSFKXXXXXXXXXXXXRIVPF--RRFHRIATA--GSHSRSLQTPKLLRSSRRTPLSKG 56
           MAC +K            R +PF  RR H  ATA  GS+SRS Q+P LLRSSR  PLSKG
Sbjct: 1   MACYYKHHSFFLHSHFLFRTIPFPLRRIHTTATATAGSYSRSFQSPNLLRSSR-APLSKG 59

Query: 57  YCRASLNSP----VSATS--TAPLVPETRCGPVQ-LPLGSAEERAANTDNGRVMLVDGTS 109
           +C  SL+S     VSATS  T  + PE   G  Q + +GS     A   NGRVML+DGTS
Sbjct: 60  FCCVSLDSHKDGVVSATSPSTGTVPPEISYGAAQPVHIGSVTNADAAA-NGRVMLIDGTS 118

Query: 110 VIHRAYYKLLAKLHHGHLTHADGNGDWVLTIFTALSLIIDVLEFLPSHVVVVFDHDGVPF 169
           VIHRAYYKLLAKLHHGHL HADGNGDWVLTIF+ALS IIDVLEF+PSHVVVVFDHDG+PF
Sbjct: 119 VIHRAYYKLLAKLHHGHLAHADGNGDWVLTIFSALSFIIDVLEFIPSHVVVVFDHDGIPF 178

Query: 170 RHVNNSSKESFTAKGQNFRHNLYPSYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPG 229
           R   NSSK+SFTAKGQNFRHNLYP+YKSNRPPTPDTIVQGLQYLKASIKAM+IKVIEVPG
Sbjct: 179 RQTLNSSKQSFTAKGQNFRHNLYPAYKSNRPPTPDTIVQGLQYLKASIKAMAIKVIEVPG 238

Query: 230 VEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGDQMVSFGVEDFAK 289
           VEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLR+APRGDQMVSFG EDFA+
Sbjct: 239 VEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRLAPRGDQMVSFGAEDFAE 298

Query: 290 RYGGLEPSQFADMIALSGDRSDNIPGVHGIGDVHAVQLISKFGTLERLLESVDQVKEDRI 349
           R+GGL+PSQF DMIALSGDRSDNIPGV+GIGDV+AVQLISKFGTLERLLESVDQ+KEDRI
Sbjct: 299 RFGGLKPSQFVDMIALSGDRSDNIPGVNGIGDVYAVQLISKFGTLERLLESVDQIKEDRI 358

Query: 350 RKALIANAEQALLSKELALLRSDLPLYMVPFSVRDLSFKKPEDDGSKFNSLLTAISAYAE 409
           RKAL  NAEQA+LSKELALLR DLP YMVPF+V+DL F KPED+GSKFNSLLTAISAYAE
Sbjct: 359 RKALTENAEQAILSKELALLRCDLPSYMVPFTVKDLLFTKPEDNGSKFNSLLTAISAYAE 418

Query: 410 GFSADPIIRRAFHLWRKLESR 430
           GFSADPIIRR  HLW KL+SR
Sbjct: 419 GFSADPIIRRVHHLWEKLDSR 439


>Medtr6g033525.1 | 5'-3' exonuclease-like protein | HC |
           chr6:10861768-10857202 | 20130731
          Length = 379

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 25/255 (9%)

Query: 183 KGQNFRHNLYPSYKSNR----------PPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEA 232
           +G  +R NL PSYK+NR                + +    +   ++  ++ VI+V G EA
Sbjct: 108 RGSEYRRNLLPSYKANRRKFVARGGGGGGGSGHVGRFYGVISDVLQKCNVPVIKVDGHEA 167

Query: 233 DDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGDQMVSFGVEDFAKRYG 292
           DDV+ TLA + +  G++V + SPDKDF Q++S +++++   P   +   +  + +  +Y 
Sbjct: 168 DDVVATLAEQVLKKGFRVVIASPDKDFKQLISDNVQIVMPKPELQRWSFYTAKHYRDQY- 226

Query: 293 GLEPSQFADMIALSGDRSDNIPGVH----GIGDVHAVQLISKFGTLERLLE--SVDQVKE 346
             +P     +  + GD  D +PG+       G   A++LI K G+LE LL   +V  V  
Sbjct: 227 NCDPQSDLSLRCIIGDEVDGVPGIQHLVPSFGWKTALKLIQKHGSLEALLNAAAVRTVGR 286

Query: 347 DRIRKALIANAEQALLSKELALLRSDLPLYMVPFSVRDLSFKKPEDDGSKFNSLLTAISA 406
              + AL   A+    + E+  L+ DL + ++   + D   +   +D    ++L   +  
Sbjct: 287 PYAQDALTKYADYLRRNYEVLALKRDLNVQLLEEWLVD---RNTHNDTVALSNLFKYLEE 343

Query: 407 YAEGFSADPIIRRAF 421
                S +PI  R F
Sbjct: 344 -----SKEPITMRNF 353


>Medtr6g033525.2 | 5'-3' exonuclease-like protein | HC |
           chr6:10861768-10857202 | 20130731
          Length = 296

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 183 KGQNFRHNLYPSYKSNR----------PPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEA 232
           +G  +R NL PSYK+NR                + +    +   ++  ++ VI+V G EA
Sbjct: 108 RGSEYRRNLLPSYKANRRKFVARGGGGGGGSGHVGRFYGVISDVLQKCNVPVIKVDGHEA 167

Query: 233 DDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGDQMVSFGVEDFAKRYG 292
           DDV+ TLA + +  G++V + SPDKDF Q++S +++++   P   +   +  + +  +Y 
Sbjct: 168 DDVVATLAEQVLKKGFRVVIASPDKDFKQLISDNVQIVMPKPELQRWSFYTAKHYRDQY- 226

Query: 293 GLEPSQFADMIALSGDRSDNIPGVH----GIGDVHAVQLISKFGTLERLLES 340
             +P     +  + GD  D +PG+       G   A++LI K G+LE LL +
Sbjct: 227 NCDPQSDLSLRCIIGDEVDGVPGIQHLVPSFGWKTALKLIQKHGSLEALLNA 278