Miyakogusa Predicted Gene

Lj4g3v0510320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0510320.1 Non Characterized Hit- tr|B8A8K7|B8A8K7_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,39.46,6e-19,seg,NULL,CUFF.47552.1
         (245 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g087380.1 | hypothetical protein | HC | chr4:34289099-3429...   270   6e-73

>Medtr4g087380.1 | hypothetical protein | HC |
           chr4:34289099-34290516 | 20130731
          Length = 240

 Score =  270 bits (691), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 151/231 (65%), Positives = 167/231 (72%), Gaps = 12/231 (5%)

Query: 20  GEKHVSNPILESQTAAKXXXXXXXXQMKILCSLPPTLSYFQFSLFMQEPRNDSTTR--KP 77
            +KHV+    +SQT  K        QMKI CSLPP LSYFQFSLFMQ+P+NDS TR  KP
Sbjct: 3   AKKHVA----KSQTEPKSSSSLLTIQMKIFCSLPPPLSYFQFSLFMQDPKNDSNTRCRKP 58

Query: 78  WYQRAMQVXXXXXXXXXXXXXPTPNNSTLWKRSMPKSPQVPT-SSPHSKNKLRKCTSLKA 136
           WYQRAM V              T NNSTLWK ++PKSPQVPT SS ++K KLRKCTSLK 
Sbjct: 59  WYQRAMDVTSLWRIIPKSTNISTSNNSTLWK-AIPKSPQVPTQSSNNNKTKLRKCTSLKV 117

Query: 137 ATSFTRVCLCAPMYSYNEILKAEVXXXXXXXXXXXXXXLQ-TAQEIRTHSARLSTEGITR 195
           ATSFTRVCLCAP+YSYNEIL+ EV              LQ T+ EIRTHSARLSTEG   
Sbjct: 118 ATSFTRVCLCAPIYSYNEILRNEVPPRRSNSYPRSSKPLQTTSHEIRTHSARLSTEG--S 175

Query: 196 RSVFRGKSLNDDVLMRRFVIEEEAMMQ-RRRNQMEVIRRRSVMRRKKLGPS 245
           R +FRGKSL DDVLM+RFVIEEEAMMQ RRRNQMEVIR+RSVMRRK+LGPS
Sbjct: 176 RRIFRGKSLTDDVLMKRFVIEEEAMMQIRRRNQMEVIRKRSVMRRKRLGPS 226