Miyakogusa Predicted Gene
- Lj4g3v0510210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0510210.1 Non Characterized Hit- tr|B9RV94|B9RV94_RICCO
Signal recognition particle 54 kD protein, putative
OS,78.7,0,SRP54,Signal recognition particle, SRP54 subunit, GTPase
domain; SRP54,Signal recognition particle, ,CUFF.47541.1
(482 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g010050.1 | signal recognition particle 54 kDa protein | H... 740 0.0
Medtr2g104050.1 | signal recognition particle 54 kDa protein | H... 669 0.0
Medtr7g085470.1 | signal recognition particle protein | LC | chr... 256 4e-68
Medtr7g085570.1 | signal recognition particle protein | LC | chr... 216 6e-56
Medtr7g104890.1 | signal recognition particle 54 kDa protein | H... 191 1e-48
Medtr7g104890.2 | signal recognition particle 54 kDa protein | H... 180 2e-45
Medtr8g032340.1 | signal recognition particle receptor FtsY | HC... 97 5e-20
Medtr4g130770.1 | signal recognition particle receptor protein, ... 92 1e-18
Medtr4g010060.1 | signal recognition particle 54 kDa protein, pu... 67 4e-11
Medtr8g032480.1 | signal recognition particle protein | HC | chr... 64 4e-10
>Medtr4g010050.1 | signal recognition particle 54 kDa protein | HC |
chr4:2207891-2201607 | 20130731
Length = 496
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/485 (74%), Positives = 409/485 (84%), Gaps = 17/485 (3%)
Query: 2 VVLQQLGESISRALQQMSNATMINEKVLNECLNEITRALLQSGVEFELVRDMQTNIKKIV 61
+VL LG SI+RAL+QMSNAT+I+EKVLNECLNEITRALLQS V+F+LVRDMQTNIKKIV
Sbjct: 1 MVLADLGGSITRALKQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIV 60
Query: 62 NLDDLTAGHNKRKIFCQAVIDELCKLLDSGKPSHTPKRRKASVVMIVGLQGSGKTTTCTK 121
NLDDL AGHNKR+I QAV +ELC +LD GKP+ TPK+ KASVVM VGLQGSGKTTTCTK
Sbjct: 61 NLDDLAAGHNKRRIIQQAVFNELCNILDPGKPAFTPKKGKASVVMFVGLQGSGKTTTCTK 120
Query: 122 YGHYHQKKGWKPALVCADTFRADAFDQLKQNATKAKIPYYGSYIESDPVKIAVEGVERFK 181
Y YHQKKGWKPALVCADTFRA AFDQLKQNATKAKIP+YGSY+ESDPVKIAVEGVERFK
Sbjct: 121 YAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
Query: 182 KENCDLIIVDTSGRHKQEAALFEEMRQVLEATKPDLVIFVMDSSIGXXXXXXXXXXXXSV 241
KENCDLIIVDTSGRHKQEAALFEEMRQV EATKPDLVIFVMDSSIG SV
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 242 AVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPFVSRLLGMEDL 301
AVGAVI+TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDV+PFVSRLLG DL
Sbjct: 241 AVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGQGDL 300
Query: 302 SGFMDKIQEVVPMDQRHELLQKLSKGIYTLRIMYKQFQNFLEIGPIDQVFSALPCFGSEL 361
SGFM+KI EVVPMDQ+ ELL KL +G +TLRIMY+QFQN L++GP+ +VFS LP F +EL
Sbjct: 301 SGFMNKIHEVVPMDQQPELLNKLQEGTFTLRIMYEQFQNILKMGPMSEVFSMLPGFSNEL 360
Query: 362 MEKGREKENQAKIKRYMRMMDSMTNEELDTSNPKLMNESRMMRVAQGSGCHVREVVEMLA 421
+ KG+++++QAKIKRYM MMDSMTNEELD+SNPKLMNESRMMR+A+GSG VREV+EM+
Sbjct: 361 LPKGKDQDSQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRQVREVMEMME 420
Query: 422 EYKYLARMWRKQKGLKSP-NGDFSA----------------SLLNQLGGMRGLRRLMTPM 464
EYK LA++W K KGLK P GD ++ +L Q+GGM GL+ LM M
Sbjct: 421 EYKRLAKIWSKMKGLKIPKKGDMNSMTRNMNATHMSKILPPQMLKQIGGMGGLQSLMKSM 480
Query: 465 GTGKN 469
G+ K+
Sbjct: 481 GSNKD 485
>Medtr2g104050.1 | signal recognition particle 54 kDa protein | HC |
chr2:44822528-44828469 | 20130731
Length = 470
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/470 (69%), Positives = 385/470 (81%), Gaps = 3/470 (0%)
Query: 2 VVLQQLGESISRALQQMSNATMINEKVLNECLNEITRALLQSGVEFELVRDMQTNIKKIV 61
+VL +LG SI+RAL +M+N T+I+EK L +CLNEI RALLQS V FEL+RDMQ NIK IV
Sbjct: 1 MVLAELGGSITRALHKMNNTTVIDEKALTDCLNEINRALLQSDVRFELIRDMQINIKNIV 60
Query: 62 NLDDLTAGHNKRKIFCQAVIDELCKLLDSGKPSHTPKRRKASVVMIVGLQGSGKTTTCTK 121
NL+ L AGHNKRKI QAV DELC++L+ GKPS PKR K SVVM VGLQGSGKTTTCTK
Sbjct: 61 NLEQLAAGHNKRKIIQQAVFDELCRMLNPGKPSFVPKREKTSVVMFVGLQGSGKTTTCTK 120
Query: 122 YGHYHQKKGWKPALVCADTFRADAFDQLKQNATKAKIPYYGSYIESDPVKIAVEGVERFK 181
Y H +QKKGWKPALVCADTFRA AFDQLKQNATKAKIP+YGSY+ESDPVKIAVEGVERFK
Sbjct: 121 YAHCYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
Query: 182 KENCDLIIVDTSGRHKQEAALFEEMRQVLEATKPDLVIFVMDSSIGXXXXXXXXXXXXSV 241
+E+ DLIIVDTSGRHKQEA+LFEEMRQ+ EATKPDLVIFVMDSSIG V
Sbjct: 181 EEDHDLIIVDTSGRHKQEASLFEEMRQLSEATKPDLVIFVMDSSIGQAAFNQAQAFKQIV 240
Query: 242 AVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPFVSRLLGMEDL 301
AVGAVI+TKMDGHAKGGG+LSAVAATKSPVIFIGTGEHMD+FEVF+V+PFVSRLLGM DL
Sbjct: 241 AVGAVIITKMDGHAKGGGSLSAVAATKSPVIFIGTGEHMDQFEVFEVQPFVSRLLGMGDL 300
Query: 302 SGFMDKIQEVVPMDQRHELLQKLSKGIYTLRIMYKQFQNFLEIGPIDQVFSALPCFGSEL 361
SG +DKI VVPMDQ+ +L+QKLSKG +TLRIMY+QFQN L++GP+ ++ S +P F SEL
Sbjct: 301 SGLIDKIHGVVPMDQQADLVQKLSKGNFTLRIMYEQFQNALKMGPMGELVSMIPGFSSEL 360
Query: 362 MEKGREKENQAKIKRYMRMMDSMTNEELDTSNPKLMNESRMMRVAQGSGCHVREVVEMLA 421
+ +G E E+ AK+K YM MMDSMTNEELD+SNPKL+NESRMMR+A+GSG VREV+E++
Sbjct: 361 IPQGHENESSAKLKHYMTMMDSMTNEELDSSNPKLINESRMMRIARGSGRLVREVLELME 420
Query: 422 EYKYLARMWRKQKGLKSPNG---DFSASLLNQLGGMRGLRRLMTPMGTGK 468
YK +A+ + K ++P F LL Q GG++GL+ +M G G+
Sbjct: 421 VYKRIAKEFSKISRCRNPQDMVKSFPPHLLKQFGGVKGLQDMMGMFGGGR 470
>Medtr7g085470.1 | signal recognition particle protein | LC |
chr7:33117310-33115264 | 20130731
Length = 321
Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/320 (48%), Positives = 193/320 (60%), Gaps = 43/320 (13%)
Query: 4 LQQLGESISRALQQMSNATMINEKVLNECLNEITRALLQSGVEFELVRDMQTNIKKIV-- 61
L LG I R +MSN T+I++++ C+NEITRA +QS +E +L+RDM IK I+
Sbjct: 3 LADLGGRILRGFDKMSNETVIDKEIRKRCVNEITRAFIQSIIEPKLIRDMHAKIKNIIYN 62
Query: 62 --NLDDLTAGHNKRKIFCQAVIDELCKLLDSGKPSHTPKRRKASVVMIVGLQGSGKTTTC 119
NLDD A RK+ Q PS ++V GKTTTC
Sbjct: 63 HLNLDDFDAA---RKMIQQV-------------PS----------CLLVLKVCCGKTTTC 96
Query: 120 TKYGHYHQKKGWKPALVCADTFRADAFDQLKQNATKAKIPYYG--SYIESDPVKIAVEGV 177
++ +++QKKG K LVC DT R AFDQLKQ + IP YG Y ++ E
Sbjct: 97 AQFANHYQKKGLKTGLVCTDTLRNGAFDQLKQIYAETNIPCYGRVGYCQN-----CRERC 151
Query: 178 ERFKKENCDLIIVDTSGRHKQEA-ALFEEMRQVLEATKPDLVIFVMDSSIGXXX-----X 231
+ + NCDLIIVD SG HKQE AL EE+ QV +ATKPDLVI V+D +IG
Sbjct: 152 GQMQGGNCDLIIVDVSGGHKQEEDALIEEIHQVSKATKPDLVILVIDGNIGQHAFDHRSL 211
Query: 232 XXXXXXXXSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPF 291
SV +GAVIV+KMDG+A GGG+LSAVAATKS VIFIGTGEHMDEFEVF+V+PF
Sbjct: 212 KQATAFTQSVDIGAVIVSKMDGYAMGGGSLSAVAATKSSVIFIGTGEHMDEFEVFEVKPF 271
Query: 292 VSRLLGMEDLSGFMDKIQEV 311
VS LLGM+D F+D++ EV
Sbjct: 272 VSSLLGMDDWYEFIDRVYEV 291
>Medtr7g085570.1 | signal recognition particle protein | LC |
chr7:33169050-33166951 | 20130731
Length = 305
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 141/309 (45%), Positives = 170/309 (55%), Gaps = 58/309 (18%)
Query: 18 MSNATMINEKVLNECLNEITRALLQSGVEFELVRDMQTNIKKIV----NLDDLTAGHNKR 73
MSN +IN++V C +EI A S +E RD++ IK I+ +L DL H
Sbjct: 1 MSNEILINKEVRKSCFSEIMLAFAHSFIEPVFTRDIRAKIKNILYNHLDLHDLATAH--- 57
Query: 74 KIFCQAVIDELCKLLDSGKPSHTPKRRKASVVMIVGLQGSGKTTTCTKYGHYHQKKGWKP 133
K+ Q V +CK+LD P +SVV GKTT CT+Y +Y+QKKG K
Sbjct: 58 KMIQQIVFGGVCKMLD-------PAGNNSSVVT---FACCGKTT-CTQYANYYQKKGLKE 106
Query: 134 ALVCADTFRADAFDQLKQNATKAKIPYYGSYIESDPVKIAV-----EGVERFKKENCDLI 188
+VCADTFR AFDQLKQN+TK IP+ G V V GVERFK+EN DLI
Sbjct: 107 GVVCADTFRDGAFDQLKQNSTKTNIPFNGRSETYLRVYYKVGDRLGRGVERFKEENYDLI 166
Query: 189 IVDTSGRHKQEA-ALFEEMRQVLEATKPDLVIFVMDSSIGXXXXXXXXXXXXSVAVGAVI 247
VDTSG HKQE ALFEEMRQV +KPD++I V+D +IG
Sbjct: 167 SVDTSGGHKQEEDALFEEMRQV---SKPDIIILVIDGNIGYDAFDDD------------- 210
Query: 248 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPFVSRLLGMEDLSGFMDK 307
ATKSPVIFI TGEHMDEFE F+V+ FVSRLLGM D S FMDK
Sbjct: 211 ------------------ATKSPVIFIATGEHMDEFEAFEVKSFVSRLLGMGDWSEFMDK 252
Query: 308 IQEVVPMDQ 316
+ EV + Q
Sbjct: 253 VYEVPELPQ 261
>Medtr7g104890.1 | signal recognition particle 54 kDa protein | HC |
chr7:42524740-42517179 | 20130731
Length = 553
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 213/427 (49%), Gaps = 7/427 (1%)
Query: 6 QLGESISRALQQMSNATMINEKVLNECLNEITRALLQSGVEFELVRDMQTNIKKIVNLDD 65
QL + A ++ ++ + + E + +I RALL++ V +VR ++
Sbjct: 70 QLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVG 129
Query: 66 LTAGHNKRKIFCQAVIDELCKLLDSGKPSHTPKRRKASVVMIVGLQGSGKTTTCTKYGHY 125
+T G + + V DEL +L+ T + +V+++ GLQG GKTT C K +Y
Sbjct: 130 VTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANY 189
Query: 126 HQKKGWKPALVCADTFRADAFDQLKQNATKAKIPYYGSYIESDPVKIAVEGVERFKKENC 185
+K+G LV D +R A DQL + +P Y + + P IA +G E KK+
Sbjct: 190 FKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKI 249
Query: 186 DLIIVDTSGRHKQEAALFEEMRQVLEATKPDLVIFVMDSSIGXXXXXXXXXXXXSVAVGA 245
D++IVDT+GR + + A+ +E++ V P V+ V+D+ G + +
Sbjct: 250 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITG 309
Query: 246 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPFVSRLLGMEDLSGFM 305
I+TK+DG ++GG ALS + P+ +G GE M++ E F + R+LGM D+ F+
Sbjct: 310 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFV 369
Query: 306 DKIQEVVPMDQRHELLQKLSKGIYTLRIMYKQFQNFLEIGPIDQVFSALPCFGSELMEKG 365
+K QEV+ + +L +K+ + KQ + ++G + +V +P +
Sbjct: 370 EKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQI 429
Query: 366 REKENQAKIKRYMRMMDSMTNEELDTSNPKLMNES--RMMRVAQGSGCHVREVVEMLAE- 422
RE E +I ++ +MT EE + P+L+ ES R RVAQ SG ++V +++A+
Sbjct: 430 REAERNLEIMEV--IIKAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 485
Query: 423 YKYLARM 429
++ RM
Sbjct: 486 FQMRVRM 492
>Medtr7g104890.2 | signal recognition particle 54 kDa protein | HC |
chr7:42524740-42517179 | 20130731
Length = 420
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 183/355 (51%), Gaps = 7/355 (1%)
Query: 78 QAVIDELCKLLDSGKPSHTPKRRKASVVMIVGLQGSGKTTTCTKYGHYHQKKGWKPALVC 137
Q V DEL +L+ T + +V+++ GLQG GKTT C K +Y +K+G LV
Sbjct: 9 QIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVA 68
Query: 138 ADTFRADAFDQLKQNATKAKIPYYGSYIESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 197
D +R A DQL + +P Y + + P IA +G E KK+ D++IVDT+GR +
Sbjct: 69 GDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQ 128
Query: 198 QEAALFEEMRQVLEATKPDLVIFVMDSSIGXXXXXXXXXXXXSVAVGAVIVTKMDGHAKG 257
+ A+ +E++ V P V+ V+D+ G + + I+TK+DG ++G
Sbjct: 129 IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRG 188
Query: 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPFVSRLLGMEDLSGFMDKIQEVVPMDQR 317
G ALS + P+ +G GE M++ E F + R+LGM D+ F++K QEV+ +
Sbjct: 189 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDA 248
Query: 318 HELLQKLSKGIYTLRIMYKQFQNFLEIGPIDQVFSALPCFGSELMEKGREKENQAKIKRY 377
+L +K+ + KQ + ++G + +V +P + RE E +I
Sbjct: 249 EDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEV 308
Query: 378 MRMMDSMTNEELDTSNPKLMNES--RMMRVAQGSGCHVREVVEMLAE-YKYLARM 429
++ +MT EE + P+L+ ES R RVAQ SG ++V +++A+ ++ RM
Sbjct: 309 --IIKAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 359
>Medtr8g032340.1 | signal recognition particle receptor FtsY | HC |
chr8:12218070-12210399 | 20130731
Length = 371
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 26/298 (8%)
Query: 19 SNATMINEKVL-------NECLNEITRALLQSGVEFELVRDMQTNIKKIVNLDDLTAGHN 71
+N ++I+E +L ++ L+E+ ALL S ++ + N+++ + L +G
Sbjct: 79 NNLSVIDELLLYWNLSDTDKVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGSE 138
Query: 72 KRKIFCQAVIDELCKLLDSGKPSHTPKR---RKASVVMIVGLQGSGKTTTCTKYGHYHQK 128
++ + V+D L S K S T + RK +V+MIVG+ G GKTT+ K + +
Sbjct: 139 IKEALKKNVLDLL-----SNKGSKTELQLGYRKPAVIMIVGVNGGGKTTSLGKLAYRLKN 193
Query: 129 KGWKPALVCADTFRADAFDQLKQNATKAKIPYYGSYIE-SDPVKIAVEGVERFKKENCDL 187
G K L DTFRA A DQL+ A + + E S + + V+R K+ +
Sbjct: 194 GGAKILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYI 253
Query: 188 II---VDTSGRHKQEAALFEEMRQVLEATK------PDLVIFVMDSSIGXXXXXXXXXXX 238
I V SG H L EE+ +A P+ ++ V+D + G
Sbjct: 254 SIGVHVIFSGLHTN-YRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFN 312
Query: 239 XSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPFVSRLL 296
V V +I+TK+DG A+GG +S V PV F+G GE +++ + FD E FV+ +
Sbjct: 313 EVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 370
>Medtr4g130770.1 | signal recognition particle receptor protein,
putative | HC | chr4:54489810-54494349 | 20130731
Length = 631
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 11/193 (5%)
Query: 115 KTTTCTKYGHYHQKKGWKPALVCADTFRADAFDQLKQNATKAKIPYYGSYIESDPVKIAV 174
K+T K ++ Q+ + DTFR+ A +QL+ +A + +IP + E DP +A
Sbjct: 438 KSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAK 497
Query: 175 EGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVLEATKPDLVIFVMDSSIGXXXXXXX 234
E ++ + D+++VDT+GR + L + +++ PDLV+FV ++ +G
Sbjct: 498 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 557
Query: 235 XXXXXSVA----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEF 283
+A + +++TK D K G ALS V + +PV+F+G G+ +
Sbjct: 558 SKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 617
Query: 284 EVFDVEPFVSRLL 296
+ +V+ V LL
Sbjct: 618 KKLNVKSIVKTLL 630
>Medtr4g010060.1 | signal recognition particle 54 kDa protein,
putative | LC | chr4:2210222-2208923 | 20130731
Length = 150
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 36 ITRALLQSGVEFELVRDMQTNIKKIVNLDDLTAGHNKRKIFCQAVIDELCKLL 88
+T L +S V+F+LVRDMQTNIKKIVNLDDL AGHNKR+I Q + L +
Sbjct: 93 VTLILNKSDVQFKLVRDMQTNIKKIVNLDDLVAGHNKRRIIQQVTLFHLSTIF 145
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 2 VVLQQLGESISRALQQMSNATMINEKVLNECLNEITR 38
+VL LG SI+ AL+QM NAT+I+E+VLNECLNEITR
Sbjct: 1 MVLAYLGWSITNALKQMRNATIIDEEVLNECLNEITR 37
>Medtr8g032480.1 | signal recognition particle protein | HC |
chr8:12458856-12456172 | 20130731
Length = 196
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 122 YGHY-HQKKGWKPALVCADTFRADAFDQLKQNATKAKIPYYGSYIE-SDPVKIAVEGVER 179
+ H+ K ++ L DTFRA A DQL+ A + + E S + + V+R
Sbjct: 11 HAHFSFSSKFYQILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKR 70
Query: 180 FKKENCDLII---VDTSGRHKQEAALFEEMRQVLEATK------PDLVIFVMDSSIGXXX 230
K+ + I V SG H L EE+ +A P+ ++ V+D + G
Sbjct: 71 RKRARLYISIGVHVIFSGLHTNYR-LMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNM 129
Query: 231 XXXXXXXXXSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEP 290
V V +I+TK+DG A+GG +S V PV F+G GE +++ + FD E
Sbjct: 130 LPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEA 189
Query: 291 FVSRLL 296
FV+ +
Sbjct: 190 FVNAIF 195