Miyakogusa Predicted Gene

Lj4g3v0510040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0510040.1 CUFF.47527.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g035660.1 | plastid transcriptionally active 14 protein | ...    85   2e-17

>Medtr2g035660.1 | plastid transcriptionally active 14 protein | HC
           | chr2:15050768-15056551 | 20130731
          Length = 480

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 69/126 (54%), Gaps = 8/126 (6%)

Query: 1   MEIPLELMLTISKKLPWMXXXXXXXXXXXXXXXXNPASPETDXXXXXXXXXXYAFDCQEN 60
           MEIPLELMLTISKKLPWM                N  +PETD          ++FDC++N
Sbjct: 116 MEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLACLLLFSFDCKDN 175

Query: 61  FWQLYGDFLPSADESTSLFIATEVLLQQSQGCDFSPSLSMNT--------KGWYWLLSLK 112
           FWQ YGDFLPS DESTSL +ATE  L + Q  D + ++ +          K W+  + LK
Sbjct: 176 FWQYYGDFLPSEDESTSLLLATEEELLELQDPDLASTMRVQQQRVLEFWEKNWHSGVPLK 235

Query: 113 VWCVWR 118
           V  + R
Sbjct: 236 VKRLAR 241