Miyakogusa Predicted Gene

Lj4g3v0506850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0506850.1 tr|I3NMM5|I3NMM5_HEVBR 50S ribosomal protein L33A
OS=Hevea brasiliensis GN=RPL33A PE=3 SV=1,81.03,1e-17,Zn-binding
ribosomal proteins,Ribosomal protein, zinc-binding domain; SUBFAMILY
NOT NAMED,NULL; FAMI,CUFF.47544.1
         (57 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g015500.1 | 50S ribosomal protein L33 | HC | chr1:3886816-...   110   4e-25
Medtr1g011670.1 | ribosomal protein L33 family protein, putative...    71   3e-13

>Medtr1g015500.1 | 50S ribosomal protein L33 | HC |
          chr1:3886816-3889784 | 20130731
          Length = 57

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/57 (92%), Positives = 56/57 (98%)

Query: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKFDPRVNKHVLFTEAKMK 57
          MG+ KKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRK+DPRVN+HVLFTEAKMK
Sbjct: 1  MGNAKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57


>Medtr1g011670.1 | ribosomal protein L33 family protein, putative
          | LC | chr1:2174997-2174678 | 20130731
          Length = 65

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 35/36 (97%)

Query: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKL 36
          MG+ KKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKL
Sbjct: 29 MGNAKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKL 64