Miyakogusa Predicted Gene

Lj4g3v0496490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0496490.1 Non Characterized Hit- tr|H3GLP9|H3GLP9_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,30.11,4e-18,CHAPERONE ATP11,ATP11; ATP11,ATP11,CUFF.47489.1
         (249 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g087955.1 | ATP synthase F1 complex assembly factor | HC |...   430   e-121
Medtr1g097870.1 | ATP11 protein | LC | chr1:44116599-44115399 | ...   115   3e-26
Medtr1g097880.1 | hypothetical protein | HC | chr1:44119424-4411...    78   9e-15

>Medtr4g087955.1 | ATP synthase F1 complex assembly factor | HC |
           chr4:34622495-34618562 | 20130731
          Length = 250

 Score =  430 bits (1106), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/250 (80%), Positives = 222/250 (88%), Gaps = 1/250 (0%)

Query: 1   MQRVSSISRFLRSIASETKTQVL-FNEPCRRAFSVVSIGAASQKSHQPEIPCDFQKWGSL 59
           MQRVSS S+  R+IAS  +  +  FN+PC R+F+ VS    SQ+ HQPE+PCDF+KWGSL
Sbjct: 1   MQRVSSTSKIWRTIASNARKNLFHFNDPCYRSFTTVSPALTSQRLHQPELPCDFRKWGSL 60

Query: 60  GFCRTSRFATGFSPLQRKPLDSIVDVERLKVRDPEDIASAWDDYHIGRGHIGATMKAKLY 119
           GFCRTSRFATGF+PLQ KPLDSIVD+ERLK RDPE+I S WDDYHIGRGHIGA+MKA LY
Sbjct: 61  GFCRTSRFATGFNPLQLKPLDSIVDIERLKDRDPENITSIWDDYHIGRGHIGASMKASLY 120

Query: 120 HLLEHRASECRYFVIPLWRGSGYTSMFVQAQAPHMIFTGLEDYKARGTQASPYFTVTFYT 179
           HLLEHRA ECRYFVIPLWRGSGY +MFVQ Q PHM+FTGLEDYKARGTQASPY+TV+FYT
Sbjct: 121 HLLEHRAKECRYFVIPLWRGSGYITMFVQVQTPHMLFTGLEDYKARGTQASPYYTVSFYT 180

Query: 180 EFAESKDLVLIRGDVVFTSKLTDSEAKWLLETAQSFYLNDVRYKLVERFNRQTREFEFKD 239
           EFAESKDLVLIRGDVVFTSKLTDSEAKWL+ETAQSFYLNDVRYKLVERFN+   EFEFKD
Sbjct: 181 EFAESKDLVLIRGDVVFTSKLTDSEAKWLVETAQSFYLNDVRYKLVERFNKDPSEFEFKD 240

Query: 240 VLQALDMPIL 249
           VL+AL+MPIL
Sbjct: 241 VLRALNMPIL 250


>Medtr1g097870.1 | ATP11 protein | LC | chr1:44116599-44115399 |
           20130731
          Length = 144

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 69/100 (69%), Gaps = 18/100 (18%)

Query: 150 QAPHMIFTGLEDYKARGTQASPYFTVTFYTEFAESKDLVLIRGDVVFTSKLTDSEAKWLL 209
           Q PHM+FTGLE Y+ RG QASPYFTV   T+F E K +                 AKWLL
Sbjct: 63  QTPHMLFTGLEHYQVRGAQASPYFTVNI-TKFGEHKLI-----------------AKWLL 104

Query: 210 ETAQSFYLNDVRYKLVERFNRQTREFEFKDVLQALDMPIL 249
           ETAQSFYLNDV YKLVERF+++  +F+FKDVLQ LDMPIL
Sbjct: 105 ETAQSFYLNDVGYKLVERFHKEACDFDFKDVLQELDMPIL 144


>Medtr1g097880.1 | hypothetical protein | HC |
           chr1:44119424-44116652 | 20130731
          Length = 97

 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 56/95 (58%), Gaps = 18/95 (18%)

Query: 34  VVSIGAASQKSHQPEIPCDFQKWGSLGFCRTSRFATGFSPLQRKPLDSIVDVERLKVRDP 93
           +V+    S+K HQP+IPC+F KWG LGF     FA   SPL++KPLDS VD        P
Sbjct: 1   MVTHPITSRKLHQPDIPCNFLKWGLLGF---WSFA---SPLKQKPLDSTVDCC------P 48

Query: 94  EDIASAWDDYHIGRGHIGATMKAKLYHLLEHRASE 128
           EDIAS WDD+            AKLYHLLEH A E
Sbjct: 49  EDIASIWDDFSWNVD------TAKLYHLLEHWAKE 77