Miyakogusa Predicted Gene

Lj4g3v0486320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0486320.1 tr|A7RXA0|A7RXA0_NEMVE Predicted protein
OS=Nematostella vectensis GN=v1g163771 PE=4 SV=1,51.22,1e-18,seg,NULL;
Zinc beta-ribbon,NULL; Elf1,Transcription elongation factor 1;
SUBFAMILY NOT NAMED,NULL; U,CUFF.47482.1
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088115.1 | transcription elongation factor-like protein |...   145   1e-35

>Medtr4g088115.1 | transcription elongation factor-like protein |
          HC | chr4:34718552-34720969 | 20130731
          Length = 88

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 71/73 (97%)

Query: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTTITALSEAIDIYSEWID 75
          MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTTITALSEAIDIYSEWID
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTTITALSEAIDIYSEWID 75

Query: 76 ECERVNNPDDDGA 88
          ECERVN  +DDGA
Sbjct: 76 ECERVNTVEDDGA 88