Miyakogusa Predicted Gene

Lj4g3v0483910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0483910.1 tr|B9P619|B9P619_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_829141 PE=4
SV=1,49.6,4e-16,seg,NULL,NODE_99899_length_735_cov_15.107483.path2.1
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088390.2 | hypothetical protein | HC | chr4:35008379-3500...   160   5e-40
Medtr4g088390.1 | hypothetical protein | HC | chr4:35007285-3500...   158   2e-39
Medtr2g014380.1 | transmembrane protein, putative | HC | chr2:40...   140   3e-34

>Medtr4g088390.2 | hypothetical protein | HC |
           chr4:35008379-35005990 | 20130731
          Length = 140

 Score =  160 bits (404), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 102/147 (69%), Gaps = 12/147 (8%)

Query: 1   MVSENEEMPSGWPFGLGFLNMRLRIAESLAAAPAEPYSV--HIPXXXXXXXXXXXLDTES 58
           ++S+N+EMP+GWP GLGFLNMRLR+ ESL AAP EPYS+  HIP           LDTES
Sbjct: 2   VISQNDEMPNGWPLGLGFLNMRLRVVESLPAAPVEPYSLSLHIPSTSFSSLSSSNLDTES 61

Query: 59  TASFFQDKSVSLGYLIGIRQGERRRLHLGNSLRFEEMEMKTLAKGS-CSEASKLEEMCMC 117
           TASFF+D SVSLG+LIGIR GE+RRL+   +LRFEE + K L  GS CS+ +        
Sbjct: 62  TASFFKDNSVSLGHLIGIRAGEKRRLYFPKTLRFEERDKKPLQNGSTCSDDTS------- 114

Query: 118 MSCGICIPKLLNALQ-KINKSKKGTRN 143
             CGICIP L + L  KI+KSKK +RN
Sbjct: 115 -KCGICIPSLFDPLLIKISKSKKNSRN 140


>Medtr4g088390.1 | hypothetical protein | HC |
           chr4:35007285-35006063 | 20130731
          Length = 145

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/145 (57%), Positives = 100/145 (68%), Gaps = 12/145 (8%)

Query: 3   SENEEMPSGWPFGLGFLNMRLRIAESLAAAPAEPYSV--HIPXXXXXXXXXXXLDTESTA 60
           S+N+EMP+GWP GLGFLNMRLR+ ESL AAP EPYS+  HIP           LDTESTA
Sbjct: 9   SQNDEMPNGWPLGLGFLNMRLRVVESLPAAPVEPYSLSLHIPSTSFSSLSSSNLDTESTA 68

Query: 61  SFFQDKSVSLGYLIGIRQGERRRLHLGNSLRFEEMEMKTLAKGS-CSEASKLEEMCMCMS 119
           SFF+D SVSLG+LIGIR GE+RRL+   +LRFEE + K L  GS CS+ +          
Sbjct: 69  SFFKDNSVSLGHLIGIRAGEKRRLYFPKTLRFEERDKKPLQNGSTCSDDTS--------K 120

Query: 120 CGICIPKLLNALQ-KINKSKKGTRN 143
           CGICIP L + L  KI+KSKK +RN
Sbjct: 121 CGICIPSLFDPLLIKISKSKKNSRN 145


>Medtr2g014380.1 | transmembrane protein, putative | HC |
           chr2:4094175-4092989 | 20130731
          Length = 182

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 92/143 (64%), Gaps = 6/143 (4%)

Query: 1   MVSENEEMPSGWPFGLGFLNMRLRIAESLAAAPAEPYSVHIPXXXXXXXXXXXLDTESTA 60
           M S+N+EM  GWP GL FLN+RLR+ E   A+  +PY +H+P           LDTESTA
Sbjct: 33  MSSQNDEMVIGWPLGLSFLNIRLRVVE---ASSMKPYQLHMPSTSFSSFSTSNLDTESTA 89

Query: 61  SFFQDKSVSLGYLIGIRQGERRRLHLGNSLRFEEMEMKTLAKGSCSEASKLEEMCMCMSC 120
           SFF+D SVSL  LIG R G+R R++  NSLRFEE   K L KGSCS  SK++     MS 
Sbjct: 90  SFFKDNSVSLAQLIGFRSGDRERMYFPNSLRFEERN-KKLEKGSCSHDSKVQ--GRDMSR 146

Query: 121 GICIPKLLNALQKINKSKKGTRN 143
            ICIP LL+ L KI  SKK +RN
Sbjct: 147 VICIPVLLDTLLKIRNSKKSSRN 169