Miyakogusa Predicted Gene

Lj4g3v0473620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0473620.1 Non Characterized Hit- tr|I1MEM6|I1MEM6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,39.35,3e-18,seg,NULL,CUFF.47431.1
         (297 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088385.1 | hypothetical protein | HC | chr4:34998967-3500...    69   5e-12
Medtr2g014400.1 | transmembrane protein, putative | HC | chr2:41...    56   4e-08
Medtr2g090660.1 | hypothetical protein | HC | chr2:38818689-3881...    51   1e-06

>Medtr4g088385.1 | hypothetical protein | HC |
          chr4:34998967-35000465 | 20130731
          Length = 358

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 1  MAPISKXXXXXXXXXXXXXXQINARDSQFFSKVTHVXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAPISK              QI+ARDSQFFSKVTHV                        
Sbjct: 1  MAPISKFLSFLFLTALSFSLQIHARDSQFFSKVTHVNNNNNVREVPNNETPLNKPE---- 56

Query: 61 QQPVFTPETENSYGLYGHESGLH 83
           QPVF PETENSYGLYGH++GLH
Sbjct: 57 NQPVFVPETENSYGLYGHDTGLH 79



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 36/44 (81%), Gaps = 2/44 (4%)

Query: 215 EVQGMSDTRFMEGGKYFYNVNSENEKYNPTGYGGESSTRGVNSE 258
           E QGMSDTR MEGGKYFY+VNSE EKYNPT + G+SS   VNSE
Sbjct: 275 ERQGMSDTRVMEGGKYFYDVNSE-EKYNPT-FNGDSSKGVVNSE 316


>Medtr2g014400.1 | transmembrane protein, putative | HC |
           chr2:4103894-4102642 | 20130731
          Length = 263

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 33/41 (80%), Gaps = 4/41 (9%)

Query: 215 EVQGMSDTRFMEGGKYFYNVNSENEKYNPTGYGGESSTRGV 255
           E QGMSDTRF+EGGKYFY+VN   EKYNPT YG   S+RGV
Sbjct: 181 EKQGMSDTRFLEGGKYFYDVNY--EKYNPTMYG--DSSRGV 217


>Medtr2g090660.1 | hypothetical protein | HC |
           chr2:38818689-38817390 | 20130731
          Length = 243

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 25/26 (96%)

Query: 217 QGMSDTRFMEGGKYFYNVNSENEKYN 242
           +GMSDTRFME GKY+YNVNSENEKYN
Sbjct: 172 EGMSDTRFMENGKYYYNVNSENEKYN 197