Miyakogusa Predicted Gene

Lj4g3v0473370.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0473370.1 Non Characterized Hit- tr|K4ATG2|K4ATG2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,53.49,3e-19,
,CUFF.47360.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099900.1 | tRNA nucleotidyltransferase/poly(A) polymerase...   134   1e-32
Medtr8g099900.3 | tRNA nucleotidyltransferase/poly(A) polymerase...   134   2e-32
Medtr8g099900.2 | tRNA nucleotidyltransferase/poly(A) polymerase...   134   2e-32
Medtr3g498785.2 | tRNA nucleotidyltransferase/poly(A) polymerase...   119   5e-28
Medtr3g498785.1 | tRNA nucleotidyltransferase/poly(A) polymerase...   119   8e-28

>Medtr8g099900.1 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr8:40297677-40291464 | 20130731
          Length = 516

 Score =  134 bits (338), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAGRKFFSKQGRKTDFES 60
           MT+RH V++ M DYPQAP SDMVFIPLGMYLKA+SIFDCL+  + +KF SK+ RK D+ES
Sbjct: 428 MTSRHSVARAMVDYPQAPHSDMVFIPLGMYLKALSIFDCLKVSSCKKFLSKKSRKIDYES 487

Query: 61  LAHGDLQEVRHMLAMVVFDTLYPLHL 86
           LA GDL E+RH+ A VVFDT+YPLHL
Sbjct: 488 LARGDLPEIRHLFARVVFDTVYPLHL 513


>Medtr8g099900.3 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr8:40295437-40291464 | 20130731
          Length = 323

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAGRKFFSKQGRKTDFES 60
           MT+RH V++ M DYPQAP SDMVFIPLGMYLKA+SIFDCL+  + +KF SK+ RK D+ES
Sbjct: 235 MTSRHSVARAMVDYPQAPHSDMVFIPLGMYLKALSIFDCLKVSSCKKFLSKKSRKIDYES 294

Query: 61  LAHGDLQEVRHMLAMVVFDTLYPLHL 86
           LA GDL E+RH+ A VVFDT+YPLHL
Sbjct: 295 LARGDLPEIRHLFARVVFDTVYPLHL 320


>Medtr8g099900.2 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr8:40297676-40291578 | 20130731
          Length = 457

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAGRKFFSKQGRKTDFES 60
           MT+RH V++ M DYPQAP SDMVFIPLGMYLKA+SIFDCL+  + +KF SK+ RK D+ES
Sbjct: 369 MTSRHSVARAMVDYPQAPHSDMVFIPLGMYLKALSIFDCLKVSSCKKFLSKKSRKIDYES 428

Query: 61  LAHGDLQEVRHMLAMVVFDTLYPLHL 86
           LA GDL E+RH+ A VVFDT+YPLHL
Sbjct: 429 LARGDLPEIRHLFARVVFDTVYPLHL 454


>Medtr3g498785.2 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr3:45158441-45152448 | 20130731
          Length = 530

 Score =  119 bits (299), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/85 (60%), Positives = 68/85 (80%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAGRKFFSKQGRKTDFES 60
           MT  H VSQ MADYPQAP SD+VFIPL +Y+K  +IF+C++  A ++  SKQG K D+ES
Sbjct: 430 MTDEHFVSQAMADYPQAPHSDLVFIPLELYVKVFNIFECVKRSAVKRSLSKQGMKIDYES 489

Query: 61  LAHGDLQEVRHMLAMVVFDTLYPLH 85
           LA+GD+QE+RH+ A +VFDT++PLH
Sbjct: 490 LANGDIQEIRHVFARIVFDTVFPLH 514


>Medtr3g498785.1 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr3:45158396-45153028 | 20130731
          Length = 552

 Score =  119 bits (297), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/85 (60%), Positives = 68/85 (80%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAGRKFFSKQGRKTDFES 60
           MT  H VSQ MADYPQAP SD+VFIPL +Y+K  +IF+C++  A ++  SKQG K D+ES
Sbjct: 452 MTDEHFVSQAMADYPQAPHSDLVFIPLELYVKVFNIFECVKRSAVKRSLSKQGMKIDYES 511

Query: 61  LAHGDLQEVRHMLAMVVFDTLYPLH 85
           LA+GD+QE+RH+ A +VFDT++PLH
Sbjct: 512 LANGDIQEIRHVFARIVFDTVFPLH 536