Miyakogusa Predicted Gene

Lj4g3v0473340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0473340.1 Non Characterized Hit- tr|I3SNA5|I3SNA5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
no description,Nucleic acid-binding, OB-fold; Nucleic acid-binding
proteins,Nucleic acid-b,CUFF.47358.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g014360.1 | nucleic acid-binding, OB-fold-like protein | H...   205   2e-53
Medtr2g090635.1 | nucleic acid-binding, OB-fold-like protein | H...   175   1e-44
Medtr8g064590.2 | nucleic acid-binding, OB-fold-like protein | H...   174   2e-44
Medtr8g064590.1 | nucleic acid-binding, OB-fold-like protein | H...   174   2e-44
Medtr5g034290.1 | nucleic acid-binding, OB-fold-like protein | H...   162   2e-40
Medtr5g034290.2 | nucleic acid-binding, OB-fold-like protein | H...   161   2e-40
Medtr6g060020.1 | nucleic acid-binding, OB-fold-like protein | H...   106   8e-24
Medtr2g090640.1 | DUF4283 domain protein | LC | chr2:38791614-38...    81   5e-16
Medtr5g083900.1 | nucleic acid-binding, OB-fold-like protein, pu...    75   2e-14
Medtr5g083870.1 | nucleic acid-binding, OB-fold-like protein | L...    72   2e-13

>Medtr2g014360.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr2:4084047-4086138 | 20130731
          Length = 152

 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 111/123 (90%), Gaps = 5/123 (4%)

Query: 21  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKG---RPSSSQN--LRPTLIAESL 75
           KPAKRKP FTKVDQ+KPGTNGHTL+AKVL+S+TVLQKG   RPSSS    +RPTLI+E L
Sbjct: 14  KPAKRKPTFTKVDQMKPGTNGHTLIAKVLTSETVLQKGGGTRPSSSSRGIVRPTLISECL 73

Query: 76  IGDETGAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEV 135
           IGDETG IIFTARNEQVELMK GNTVI+RN+KIDMFKGSMRLAVDKWGRIEVT+PA+F V
Sbjct: 74  IGDETGTIIFTARNEQVELMKAGNTVIIRNSKIDMFKGSMRLAVDKWGRIEVTDPAEFVV 133

Query: 136 KED 138
           KED
Sbjct: 134 KED 136


>Medtr2g090635.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr2:38787156-38789810 | 20130731
          Length = 140

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 98/119 (82%), Gaps = 3/119 (2%)

Query: 23  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSD---TVLQKGRPSSSQNLRPTLIAESLIGDE 79
           AKRKPVF KVDQLKPGTNGHTL  KV++S    T+  +G  S+    RP+ IAE +IGDE
Sbjct: 6   AKRKPVFVKVDQLKPGTNGHTLTVKVVNSSPVKTIPNRGGRSAVIASRPSRIAECVIGDE 65

Query: 80  TGAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           T +IIFTARNEQV+LM PG T+ILRNAKIDMFKGSMRLAVD+WGRIEVTEPA FEV+ED
Sbjct: 66  TASIIFTARNEQVDLMNPGATLILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVRED 124


>Medtr8g064590.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr8:27116410-27113210 | 20130731
          Length = 136

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 99/118 (83%), Gaps = 1/118 (0%)

Query: 21  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDET 80
           KP  RKP FTKV+QL+PGT+GHTL  KV+++  V+QKGRP   Q  R   IAESL+GDET
Sbjct: 5   KPGLRKPTFTKVEQLRPGTSGHTLTVKVVNTKMVMQKGRPDGPQP-RQMRIAESLVGDET 63

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           G IIFTARN+QV+L+K G+T+ILRNAKIDMFKGSMRLAVDKWGR+EVT+PA F VKED
Sbjct: 64  GMIIFTARNDQVDLLKDGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTVKED 121


>Medtr8g064590.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr8:27116409-27113327 | 20130731
          Length = 136

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 99/118 (83%), Gaps = 1/118 (0%)

Query: 21  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDET 80
           KP  RKP FTKV+QL+PGT+GHTL  KV+++  V+QKGRP   Q  R   IAESL+GDET
Sbjct: 5   KPGLRKPTFTKVEQLRPGTSGHTLTVKVVNTKMVMQKGRPDGPQP-RQMRIAESLVGDET 63

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           G IIFTARN+QV+L+K G+T+ILRNAKIDMFKGSMRLAVDKWGR+EVT+PA F VKED
Sbjct: 64  GMIIFTARNDQVDLLKDGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTVKED 121


>Medtr5g034290.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr5:14839397-14843757 | 20130731
          Length = 168

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 92/118 (77%), Gaps = 1/118 (0%)

Query: 21  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDET 80
           KPA RKPVF KVDQL PGT GHT++ KV+S   V Q  RP   + LR   +AE L+GDET
Sbjct: 38  KPALRKPVFCKVDQLLPGTRGHTIIVKVVSVKLVDQNDRPDGLK-LRHMRMAECLVGDET 96

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           G IIFTAR+EQV+LM  G+T+I+RNAKIDMFKG+MRL VD WGRIE+TEPA F VKED
Sbjct: 97  GTIIFTARHEQVDLMTEGSTIIVRNAKIDMFKGTMRLGVDVWGRIELTEPAAFTVKED 154


>Medtr5g034290.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr5:14840270-14843747 | 20130731
          Length = 135

 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 92/118 (77%), Gaps = 1/118 (0%)

Query: 21  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDET 80
           KPA RKPVF KVDQL PGT GHT++ KV+S   V Q  RP   + LR   +AE L+GDET
Sbjct: 5   KPALRKPVFCKVDQLLPGTRGHTIIVKVVSVKLVDQNDRPDGLK-LRHMRMAECLVGDET 63

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           G IIFTAR+EQV+LM  G+T+I+RNAKIDMFKG+MRL VD WGRIE+TEPA F VKED
Sbjct: 64  GTIIFTARHEQVDLMTEGSTIIVRNAKIDMFKGTMRLGVDVWGRIELTEPAAFTVKED 121


>Medtr6g060020.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr6:20603676-20603377 | 20130731
          Length = 99

 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 66/85 (77%), Gaps = 2/85 (2%)

Query: 54  VLQKGRPSSSQNLRPTLIAESLIGDETGAIIFTARNEQVELMKPGNTVILRNAKIDMFKG 113
           V+QKG P   Q  +  ++A SL+GDET  IIFTARN++V L+K G+T+ILRNAKID+FKG
Sbjct: 2   VMQKGHPDGPQPRQ--MLAGSLVGDETRMIIFTARNDKVNLLKDGSTIILRNAKIDIFKG 59

Query: 114 SMRLAVDKWGRIEVTEPAKFEVKED 138
           SM L VDKWGR+EVT+   F VK+D
Sbjct: 60  SMWLVVDKWGRVEVTDLTNFTVKDD 84


>Medtr2g090640.1 | DUF4283 domain protein | LC |
           chr2:38791614-38794576 | 20130731
          Length = 543

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 4/73 (5%)

Query: 70  LIAESLIGDETGAIIF----TARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRI 125
            IAE L+GDETG IIF    T  +  ++L+KPG T+ LRNAKI++F   MRLAVD  G I
Sbjct: 455 CIAECLVGDETGTIIFRGQQTGYDFLLDLVKPGATLSLRNAKINLFWEHMRLAVDWRGCI 514

Query: 126 EVTEPAKFEVKED 138
           ++TEPA FEV+ED
Sbjct: 515 QLTEPASFEVRED 527


>Medtr5g083900.1 | nucleic acid-binding, OB-fold-like protein,
           putative | LC | chr5:36203859-36205701 | 20130731
          Length = 229

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 27  PVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDETGAIIFT 86
           P+FTKV  L+P      +  KV++   V  KG            + ESL+GDETG II  
Sbjct: 111 PLFTKVQDLRPEMENINITLKVVNVKKVSSKGH---------MPVTESLVGDETGIIILR 161

Query: 87  ARN-EQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           A   +++  +K G+T++L  AKI M++GSMRL V +   IE   PA F +KED
Sbjct: 162 AVGADKINRVKEGSTIVLHKAKIIMYRGSMRLGVCRAEDIEEAPPAAFTIKED 214


>Medtr5g083870.1 | nucleic acid-binding, OB-fold-like protein | LC |
           chr5:36194915-36195298 | 20130731
          Length = 127

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 14/117 (11%)

Query: 27  PVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIG---DETGAI 83
           PVF KV  L+P      L  KVL+   V +KG            + ESL+G   DETG I
Sbjct: 5   PVFIKVHDLRPEMEDVNLTLKVLNVKDVSRKGSMP---------VTESLVGVEYDETGII 55

Query: 84  IFTA-RNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRI-EVTEPAKFEVKED 138
           IF A   +++  +K G+T+++R A+I M+KGSMRL+V +   I E  EPA F VKED
Sbjct: 56  IFRAIGGDKINRVKEGSTIVVRKARILMYKGSMRLSVRRAEDIVEAPEPASFIVKED 112