Miyakogusa Predicted Gene

Lj4g3v0472820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0472820.1 Non Characterized Hit- tr|I3SPP4|I3SPP4_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,76.92,6e-17,SBP,Transcription factor, SBP-box; seg,NULL; SBT
domain,Transcription factor, SBP-box; PROKAR_LIPOPR,gene.g52482.t1.1
         (171 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088555.1 | squamosa promoter-binding-like protein | HC | ...    91   6e-19
Medtr2g014200.1 | squamosa promoter-binding-like protein | HC | ...    76   1e-14
Medtr8g005960.1 | squamosa promoter-binding-like protein | HC | ...    49   2e-06
Medtr7g110320.2 | squamosa promoter-binding-like protein | HC | ...    47   6e-06
Medtr7g110320.1 | squamosa promoter-binding-like protein | HC | ...    47   7e-06

>Medtr4g088555.1 | squamosa promoter-binding-like protein | HC |
           chr4:35179012-35174504 | 20130731
          Length = 144

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 53/78 (67%), Gaps = 6/78 (7%)

Query: 35  EGKRTLRYKXXXXXXXXXXXXXXXX----GRRKRVVTDLYSKRGSK--GGSSVPPSCQVE 88
           EGKR+L+YK                    GRRKRVVTDLYSKR SK  G S++PP CQVE
Sbjct: 7   EGKRSLKYKEDHEEEEEEEEDTDFEEEEDGRRKRVVTDLYSKRSSKKAGSSNIPPCCQVE 66

Query: 89  NCDADLSEAKQYHRRHKV 106
           NCDADLSEAKQYHRRHKV
Sbjct: 67  NCDADLSEAKQYHRRHKV 84


>Medtr2g014200.1 | squamosa promoter-binding-like protein | HC |
           chr2:3964615-3967481 | 20130731
          Length = 143

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 61  RRKRVVTD-LYSKRGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVFPRGFYPSKVLMR 119
           +RKRVVTD LY+K+GSK G SV PSCQV+NC+ADLS AKQYH+RHKV         VL+ 
Sbjct: 39  KRKRVVTDHLYNKKGSKAGGSVTPSCQVDNCNADLSAAKQYHKRHKVCENHSKAHSVLIS 98

Query: 120 PVLE 123
            + +
Sbjct: 99  ELQQ 102


>Medtr8g005960.1 | squamosa promoter-binding-like protein | HC |
           chr8:421415-419202 | 20130731
          Length = 327

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 23/29 (79%)

Query: 78  GSSVPPSCQVENCDADLSEAKQYHRRHKV 106
           GSS  P CQ E C+ADLS+AK YHRRHKV
Sbjct: 180 GSSNSPRCQAEGCNADLSQAKHYHRRHKV 208


>Medtr7g110320.2 | squamosa promoter-binding-like protein | HC |
           chr7:45220920-45211089 | 20130731
          Length = 860

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query: 73  RGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVFPRGFYPSKVLM 118
           R + GGSS    CQVE+C ADL+ AK YHRRHKV       SK L+
Sbjct: 133 RVAGGGSSSRAFCQVEDCRADLNNAKDYHRRHKVCEIHSKASKALV 178


>Medtr7g110320.1 | squamosa promoter-binding-like protein | HC |
           chr7:45220920-45210190 | 20130731
          Length = 1001

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query: 73  RGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVFPRGFYPSKVLM 118
           R + GGSS    CQVE+C ADL+ AK YHRRHKV       SK L+
Sbjct: 133 RVAGGGSSSRAFCQVEDCRADLNNAKDYHRRHKVCEIHSKASKALV 178