Miyakogusa Predicted Gene

Lj4g3v0462750.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0462750.1 tr|I3S397|I3S397_LOTJA 40S ribosomal protein S6
OS=Lotus japonicus PE=2 SV=1,98.47,0,Ribosomal_S6e,Ribosomal protein
S6e; seg,NULL; 40S RIBOSOMAL PROTEIN S6,Ribosomal protein S6e;
RIBOS,CUFF.47375.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088595.1 | 40S ribosomal protein S6-2 | HC | chr4:3521787...   359   e-100
Medtr2g014030.1 | 40S ribosomal protein S6-2 | HC | chr2:3889618...   355   1e-98
Medtr7g053160.2 | 40S ribosomal protein S6-2 | HC | chr7:1869884...   354   2e-98
Medtr7g053160.1 | 40S ribosomal protein S6-2 | HC | chr7:1869884...   354   2e-98

>Medtr4g088595.1 | 40S ribosomal protein S6-2 | HC |
           chr4:35217876-35214826 | 20130731
          Length = 248

 Score =  359 bits (922), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/197 (89%), Positives = 179/197 (90%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDD+KLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDMKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGD
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGD 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR FTTK+GKKVSKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKDGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>Medtr2g014030.1 | 40S ribosomal protein S6-2 | HC |
           chr2:3889618-3893135 | 20130731
          Length = 248

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/197 (88%), Positives = 177/197 (89%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDD+KLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDMKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR FTTK GKK SKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGKKQSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>Medtr7g053160.2 | 40S ribosomal protein S6-2 | HC |
           chr7:18698849-18702573 | 20130731
          Length = 248

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/197 (88%), Positives = 177/197 (89%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDD KLRAFWDKRISQEV GDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR FTTK+GKKVSKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKDGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>Medtr7g053160.1 | 40S ribosomal protein S6-2 | HC |
           chr7:18698849-18702010 | 20130731
          Length = 248

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/197 (88%), Positives = 177/197 (89%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDD KLRAFWDKRISQEV GDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR FTTK+GKKVSKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKDGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197