Miyakogusa Predicted Gene

Lj4g3v0462600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0462600.1 Non Characterized Hit- tr|I1KLL8|I1KLL8_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,86.01,0,30S RIBOSOMAL
PROTEIN S5P,NULL; RIBOSOMAL S SUBUNIT,Ribosomal protein S5; seg,NULL;
rpsE_bact: ribos,CUFF.47321.1
         (293 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088615.1 | ribosomal protein S5 | HC | chr4:35234781-3523...   260   1e-69
Medtr4g088615.2 | ribosomal protein S5 | HC | chr4:35234781-3523...   137   8e-33
Medtr8g093680.1 | 30S ribosomal protein S5 | HC | chr8:39195970-...    52   7e-07

>Medtr4g088615.1 | ribosomal protein S5 | HC |
           chr4:35234781-35236988 | 20130731
          Length = 303

 Score =  260 bits (664), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/221 (62%), Positives = 155/221 (70%)

Query: 72  PEEDLPFNXXXXXXXXXXXXSIDDGPXXXXXXXXXXXXXXXXXXXSGVSVLGNDIHVMDS 131
           PEEDLPFN            SIDDGP                   SGVSVLGNDI+VMD 
Sbjct: 67  PEEDLPFNPPEIPEGFIPPPSIDDGPDEDEDEIAAAYEELYGVAYSGVSVLGNDINVMDK 126

Query: 132 KAKKDTGFGSGVKKEKVRDGFEERVVQVRRITKVVKGGKQLKFRXXXXXXXXXXXXXXXX 191
           KA+KDTGFGSGVKKEK+RDG EERV+QVRR+TKVVKGGKQ++FR                
Sbjct: 127 KARKDTGFGSGVKKEKIRDGLEERVIQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGV 186

Query: 192 XXXXXXXXXXXXXXXNARRNIVSVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGG 251
                          NARRN++ VPMTKYLTFPHR+DGDYGA+KVMLRPASPGTGVIAGG
Sbjct: 187 GKAKEVVSAVQKSAINARRNLIRVPMTKYLTFPHRADGDYGASKVMLRPASPGTGVIAGG 246

Query: 252 AVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQF 292
           +VRIVLEMAGVENALGKQLGS+NALNNARAT+ AVQKM+Q+
Sbjct: 247 SVRIVLEMAGVENALGKQLGSDNALNNARATIAAVQKMKQY 287


>Medtr4g088615.2 | ribosomal protein S5 | HC |
           chr4:35234781-35235951 | 20130731
          Length = 251

 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 89/154 (57%)

Query: 72  PEEDLPFNXXXXXXXXXXXXSIDDGPXXXXXXXXXXXXXXXXXXXSGVSVLGNDIHVMDS 131
           PEEDLPFN            SIDDGP                   SGVSVLGNDI+VMD 
Sbjct: 67  PEEDLPFNPPEIPEGFIPPPSIDDGPDEDEDEIAAAYEELYGVAYSGVSVLGNDINVMDK 126

Query: 132 KAKKDTGFGSGVKKEKVRDGFEERVVQVRRITKVVKGGKQLKFRXXXXXXXXXXXXXXXX 191
           KA+KDTGFGSGVKKEK+RDG EERV+QVRR+TKVVKGGKQ++FR                
Sbjct: 127 KARKDTGFGSGVKKEKIRDGLEERVIQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGV 186

Query: 192 XXXXXXXXXXXXXXXNARRNIVSVPMTKYLTFPH 225
                          NARRN++ VPMTKYLTFPH
Sbjct: 187 GKAKEVVSAVQKSAINARRNLIRVPMTKYLTFPH 220


>Medtr8g093680.1 | 30S ribosomal protein S5 | HC |
           chr8:39195970-39190835 | 20130731
          Length = 502

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 54/138 (39%)

Query: 149 RDGFEERVVQVRRITKVVKGGKQLKFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNA 208
           R GF+ +++ V R  KV KGG+  K+                                  
Sbjct: 342 RKGFDVKLIDVNRTCKVTKGGQIFKYTAMLACGNYNGVVGFAKAKGPKAPDALSKAYEKC 401

Query: 209 RRNIVSVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGK 268
            +N+  +   +  T  H     Y   KV L PAS  TG+ AG  V+ +L +AG +N   K
Sbjct: 402 FQNLHYIERHEEHTIAHAIQTSYKKTKVYLWPASTATGMKAGRIVQTILHLAGFKNVKSK 461

Query: 269 QLGSNNALNNARATVVAV 286
            +G  N  N  +A   A+
Sbjct: 462 VVGQRNPHNTVKAVFKAL 479