Miyakogusa Predicted Gene

Lj4g3v0462580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0462580.1 Non Characterized Hit- tr|I1IGN1|I1IGN1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,51.49,2e-19,seg,NULL,CUFF.47297.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088680.1 | transmembrane protein, putative | HC | chr4:35...    74   2e-14

>Medtr4g088680.1 | transmembrane protein, putative | HC |
           chr4:35290884-35288081 | 20130731
          Length = 117

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 52/99 (52%)

Query: 19  AQAVLLGALAPGVNGPTWIXXXXXXXXXXXXXXXXXXXXXXXXDSWLVLHVGXXXXXXXX 78
           A AV LGALAPGVNGPTW                         DSWLV HV         
Sbjct: 19  ATAVFLGALAPGVNGPTWNTLKSAFLMLGLCLAVMLGLAFSSSDSWLVFHVVFLVLISVT 78

Query: 79  XXXXXSWFLAETGLVSIEHQMCEMGLQQKDNPETNRKTK 117
                SWFL+ETGLVS+EHQM EMGL+ KD  E N+K++
Sbjct: 79  LFLLLSWFLSETGLVSVEHQMREMGLEAKDPLEANKKSE 117