Miyakogusa Predicted Gene

Lj4g3v0461350.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0461350.4 Non Characterized Hit- tr|I3SQK6|I3SQK6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,AIM24,Mitochondrial biogenesis protein AIM24; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; TRAP-,CUFF.47377.4
         (230 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g100740.1 | tryptophan RNA-binding attenuator-like protein...   410   e-115
Medtr4g100740.2 | tryptophan RNA-binding attenuator-like protein...   294   5e-80

>Medtr4g100740.1 | tryptophan RNA-binding attenuator-like protein |
           HC | chr4:41554238-41560159 | 20130731
          Length = 281

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/230 (86%), Positives = 216/230 (93%)

Query: 1   MCFMSGSIEMENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPID 60
           MCFMSGS+EMENAYLPENEVG  QWLFGKT+T+IV+ NSGPSDGFVGIAAPYFARILPID
Sbjct: 52  MCFMSGSVEMENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILPID 111

Query: 61  LAMFNGGILCQPDAFLCSVNDVKVSNTFDQRGQNVVAGAERFLRQKLSGQGVAFILAGGS 120
           LA FNG ILCQPDAFLCSVNDVKVSNT DQRG+NVVAGAE FLRQKLSGQG+AFIL GGS
Sbjct: 112 LATFNGEILCQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGS 171

Query: 121 VVQKNLEIGEVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTALLTGPGIVFIQ 180
           VVQK LE+GEVLAVDVSCIVAVTSTV++QIK NGPARRTMFGGD+ VTA+LTGPGIVFIQ
Sbjct: 172 VVQKILEVGEVLAVDVSCIVAVTSTVDIQIKYNGPARRTMFGGDNAVTAVLTGPGIVFIQ 231

Query: 181 SLPFHRLSQRIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSLLLTDV 230
           SLPF R SQRIARAVTSPNMRENPKF+IQIA+FF +AYVVI+SSL+LTDV
Sbjct: 232 SLPFPRFSQRIARAVTSPNMRENPKFFIQIALFFFLAYVVIVSSLILTDV 281


>Medtr4g100740.2 | tryptophan RNA-binding attenuator-like protein |
           HC | chr4:41554274-41560127 | 20130731
          Length = 219

 Score =  294 bits (752), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/162 (88%), Positives = 152/162 (93%)

Query: 1   MCFMSGSIEMENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPID 60
           MCFMSGS+EMENAYLPENEVG  QWLFGKT+T+IV+ NSGPSDGFVGIAAPYFARILPID
Sbjct: 52  MCFMSGSVEMENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILPID 111

Query: 61  LAMFNGGILCQPDAFLCSVNDVKVSNTFDQRGQNVVAGAERFLRQKLSGQGVAFILAGGS 120
           LA FNG ILCQPDAFLCSVNDVKVSNT DQRG+NVVAGAE FLRQKLSGQG+AFIL GGS
Sbjct: 112 LATFNGEILCQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGS 171

Query: 121 VVQKNLEIGEVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFG 162
           VVQK LE+GEVLAVDVSCIVAVTSTV++QIK NGPARRTMFG
Sbjct: 172 VVQKILEVGEVLAVDVSCIVAVTSTVDIQIKYNGPARRTMFG 213