Miyakogusa Predicted Gene

Lj4g3v0451300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451300.1 tr|A9TCJ5|A9TCJ5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_90989
,55,0.000000000000003,seg,NULL; no description,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; MSS1/TRME-,CUFF.47271.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088800.1 | P-loop nucleoside triphosphate hydrolase super...   171   2e-43
Medtr3g109540.1 | ribosome biogenesis GTP-binding protein YsxC |...   105   2e-23
Medtr3g466440.1 | GTP-binding protein EngB, putative | HC | chr3...    48   5e-06
Medtr3g466440.2 | GTP-binding protein EngB, putative | HC | chr3...    48   5e-06

>Medtr4g088800.1 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr4:35404838-35407436 |
           20130731
          Length = 297

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 89/98 (90%)

Query: 69  EPRFLFIPPGIEPDEVTDSMILPASNIVVGPYAGDSRIKDVEFVKSSPRARDCPKDDRPE 128
           E  FLFIPPG+EP E+ DSMILP SNIVVGPYAGDSRIKDVEFVKSSP+A+DCPKD RPE
Sbjct: 60  EKPFLFIPPGVEPTEINDSMILPFSNIVVGPYAGDSRIKDVEFVKSSPKAKDCPKDHRPE 119

Query: 129 FAVLGRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           FAVLGRSNVGKSSLINSLVRKKELALTSK+PG  + +N
Sbjct: 120 FAVLGRSNVGKSSLINSLVRKKELALTSKKPGKTQLIN 157


>Medtr3g109540.1 | ribosome biogenesis GTP-binding protein YsxC | HC
           | chr3:50687042-50683808 | 20130731
          Length = 301

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 73  LFIPPGIEPDEVTDSMILPASNIVVGPYAGDSRIKDVEFVKSSPRARDCPKDDRPEFAVL 132
           LFIPP        ++ IL  SNI++  YA D++I   +FVKSS R  DCP D  PEFA++
Sbjct: 66  LFIPPNTHVTH-ENARILNGSNILLSNYANDAQIIQADFVKSSVRTEDCPSDGLPEFALV 124

Query: 133 GRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           GRSNVGKSSL+NS+VR+K+LALTSK+PG  + +N
Sbjct: 125 GRSNVGKSSLLNSIVRRKKLALTSKKPGKTQLIN 158


>Medtr3g466440.1 | GTP-binding protein EngB, putative | HC |
           chr3:27296439-27291356 | 20130731
          Length = 664

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 109 VEFVKSSPRARDCPKDDRPEFAVLGRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           +EF  ++  +   P  + PE A  G+SNVGKSSL+N+L R+  +  TS +PG+ +T+N
Sbjct: 471 LEFFAAAKVSSSFPPPNLPEIAFAGKSNVGKSSLLNALTRQWGVVRTSDKPGHTQTIN 528


>Medtr3g466440.2 | GTP-binding protein EngB, putative | HC |
           chr3:27296439-27291356 | 20130731
          Length = 664

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 109 VEFVKSSPRARDCPKDDRPEFAVLGRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           +EF  ++  +   P  + PE A  G+SNVGKSSL+N+L R+  +  TS +PG+ +T+N
Sbjct: 471 LEFFAAAKVSSSFPPPNLPEIAFAGKSNVGKSSLLNALTRQWGVVRTSDKPGHTQTIN 528