Miyakogusa Predicted Gene

Lj4g3v0451230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451230.1 tr|D3NX35|D3NX35_AZOS1 50S ribosomal protein L21
OS=Azospirillum sp. (strain B510) GN=rplU PE=3 SV=1,49.04,7e-19,L21:
ribosomal protein L21,Ribosomal protein L21; Ribosomal_L21p,Ribosomal
protein L21; L21p-like,NU,CUFF.47313.1
         (277 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g111750.3 | 50S ribosomal protein L21, related protein | H...   229   2e-60
Medtr7g111750.2 | 50S ribosomal protein L21, related protein | H...   229   2e-60
Medtr7g111750.1 | 50S ribosomal protein L21, related protein | H...   229   3e-60
Medtr2g058400.1 | 50S ribosomal protein L21, related protein | H...   145   6e-35
Medtr1g096460.1 | 50S ribosomal protein L21 | HC | chr1:43452394...    72   7e-13

>Medtr7g111750.3 | 50S ribosomal protein L21, related protein | HC |
           chr7:45898598-45895061 | 20130731
          Length = 290

 Score =  229 bits (585), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/271 (51%), Positives = 151/271 (55%), Gaps = 13/271 (4%)

Query: 4   RRCLQALTRQAHDATTFLFTHPSSPSLRPFPTAA---ISSP---ISTNPRPISAFAQWCH 57
           RRCLQALTRQ+   T  LF  P S  L          ISSP   I TN +P SAF QW H
Sbjct: 6   RRCLQALTRQS-QPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFGQWHH 64

Query: 58  LRYFSTSKQDDHVKNGANXX------XXXXXXXXXXXXXXXXXXXXXXXXXYVAGGSKGK 111
            RYFS+SKQDDH+K G                                        S  K
Sbjct: 65  GRYFSSSKQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSRK 124

Query: 112 KVLTXXXXXXXXXXIGYKVEGPLLEKDGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERL 171
           KV T          IGYKV GPL + D VFKPYEP FAVVQIGSHQFKVSNGDSIFTERL
Sbjct: 125 KVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERL 184

Query: 172 KFCEVNDKLILNKVMLLGSATQTIIGRPTVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXX 231
           KFCEVNDKLILNKV+LLGS +QTI+GRP VPD           LDAKVIIF         
Sbjct: 185 KFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNYR 244

Query: 232 XXXXXXQELTKLRITDIQGIEKPPIVLDEKP 262
                 QELTKLRIT+I+G+EKP   L EKP
Sbjct: 245 RTKGHRQELTKLRITNIEGVEKPLNELVEKP 275


>Medtr7g111750.2 | 50S ribosomal protein L21, related protein | HC |
           chr7:45898965-45894633 | 20130731
          Length = 290

 Score =  229 bits (585), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/271 (51%), Positives = 151/271 (55%), Gaps = 13/271 (4%)

Query: 4   RRCLQALTRQAHDATTFLFTHPSSPSLRPFPTAA---ISSP---ISTNPRPISAFAQWCH 57
           RRCLQALTRQ+   T  LF  P S  L          ISSP   I TN +P SAF QW H
Sbjct: 6   RRCLQALTRQS-QPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFGQWHH 64

Query: 58  LRYFSTSKQDDHVKNGANXX------XXXXXXXXXXXXXXXXXXXXXXXXXYVAGGSKGK 111
            RYFS+SKQDDH+K G                                        S  K
Sbjct: 65  GRYFSSSKQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSRK 124

Query: 112 KVLTXXXXXXXXXXIGYKVEGPLLEKDGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERL 171
           KV T          IGYKV GPL + D VFKPYEP FAVVQIGSHQFKVSNGDSIFTERL
Sbjct: 125 KVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERL 184

Query: 172 KFCEVNDKLILNKVMLLGSATQTIIGRPTVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXX 231
           KFCEVNDKLILNKV+LLGS +QTI+GRP VPD           LDAKVIIF         
Sbjct: 185 KFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNYR 244

Query: 232 XXXXXXQELTKLRITDIQGIEKPPIVLDEKP 262
                 QELTKLRIT+I+G+EKP   L EKP
Sbjct: 245 RTKGHRQELTKLRITNIEGVEKPLNELVEKP 275


>Medtr7g111750.1 | 50S ribosomal protein L21, related protein | HC |
           chr7:45898944-45894633 | 20130731
          Length = 300

 Score =  229 bits (583), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 140/271 (51%), Positives = 151/271 (55%), Gaps = 13/271 (4%)

Query: 4   RRCLQALTRQAHDATTFLFTHPSSPSLRPFPTAA---ISSP---ISTNPRPISAFAQWCH 57
           RRCLQALTRQ+   T  LF  P S  L          ISSP   I TN +P SAF QW H
Sbjct: 16  RRCLQALTRQS-QPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFGQWHH 74

Query: 58  LRYFSTSKQDDHVKNGANXX------XXXXXXXXXXXXXXXXXXXXXXXXXYVAGGSKGK 111
            RYFS+SKQDDH+K G                                        S  K
Sbjct: 75  GRYFSSSKQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSRK 134

Query: 112 KVLTXXXXXXXXXXIGYKVEGPLLEKDGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERL 171
           KV T          IGYKV GPL + D VFKPYEP FAVVQIGSHQFKVSNGDSIFTERL
Sbjct: 135 KVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERL 194

Query: 172 KFCEVNDKLILNKVMLLGSATQTIIGRPTVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXX 231
           KFCEVNDKLILNKV+LLGS +QTI+GRP VPD           LDAKVIIF         
Sbjct: 195 KFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNYR 254

Query: 232 XXXXXXQELTKLRITDIQGIEKPPIVLDEKP 262
                 QELTKLRIT+I+G+EKP   L EKP
Sbjct: 255 RTKGHRQELTKLRITNIEGVEKPLNELVEKP 285


>Medtr2g058400.1 | 50S ribosomal protein L21, related protein | HC |
           chr2:24132316-24136266 | 20130731
          Length = 368

 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 83/115 (72%)

Query: 148 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVMLLGSATQTIIGRPTVPDXXXX 207
           FAVV+IGSHQFKVSNGD+IFTERLKFCEVNDKLILNKV+LLGS +QTI+GRP VPD    
Sbjct: 239 FAVVEIGSHQFKVSNGDNIFTERLKFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVH 298

Query: 208 XXXXXXXLDAKVIIFXXXXXXXXXXXXXXXQELTKLRITDIQGIEKPPIVLDEKP 262
                  LDAKVIIF               QELTKLRIT+I+G+EKP   L EKP
Sbjct: 299 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITNIEGVEKPLNELVEKP 353



 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 4   RRCLQALTRQAHDATTFLFTHPSSPSLRP---FPTAAISSP---ISTNPRPISAFAQWCH 57
           RRCLQALT+Q+   T  LF  PSS        F    ISSP   I TN +  SAF QW H
Sbjct: 106 RRCLQALTQQSQ-PTLPLFKDPSSLRSLSSAAFLNQNISSPLLPIFTNSKARSAFGQWHH 164

Query: 58  LRYFSTSKQDDHVKNGA 74
             YFS+SKQDDH+K G 
Sbjct: 165 GSYFSSSKQDDHIKEGG 181


>Medtr1g096460.1 | 50S ribosomal protein L21 | HC |
           chr1:43452394-43449886 | 20130731
          Length = 212

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 9/132 (6%)

Query: 130 VEGPLLEKDGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVMLLG 189
           V+ P  EK         +FAVV IG  Q+ V  G  +  +RLK   VNDK+ L+KV+L+G
Sbjct: 83  VQSPSWEKG--------LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVG 134

Query: 190 SATQTIIGRPTVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXXXXQELTKLRITDIQ 249
           + T   IG+P V +           LD KVI+F               Q  T++RI  I 
Sbjct: 135 TDTSCYIGKPVVTNAVVYATVEEQGLDNKVIVFKYKRKKKYRRTIGHRQPNTRIRINSIM 194

Query: 250 GIEK-PPIVLDE 260
           G E  P + +D+
Sbjct: 195 GYEDYPKVTMDD 206