Miyakogusa Predicted Gene

Lj4g3v0451200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451200.1 Non Characterized Hit- tr|J3KY33|J3KY33_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G1,45.71,3e-19,seg,NULL; INTEGRAL MEMBRANE FAMILY PROTEIN,NULL;
NITRATE, FROMATE, IRON DEHYDROGENASE,NULL; A_tha_TI,CUFF.47265.1
         (172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...   122   1e-28
Medtr7g011090.1 | casparian strip membrane protein | HC | chr7:2...    65   2e-11
Medtr5g041900.1 | casparian strip membrane protein | HC | chr5:1...    64   8e-11
Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...    58   4e-09
Medtr4g118810.1 | plant integral membrane protein | HC | chr4:49...    57   9e-09
Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC | chr8:37100...    56   2e-08
Medtr4g081880.1 | casparian strip membrane protein | HC | chr4:3...    54   6e-08
Medtr1g058540.1 | casparian strip membrane protein | HC | chr1:2...    53   1e-07
Medtr7g083120.1 | plant integral membrane protein | HC | chr7:31...    52   4e-07
Medtr1g058560.1 | casparian strip membrane protein | HC | chr1:2...    50   7e-07

>Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0004:83573-81269 | 20130731
          Length = 163

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 76/119 (63%), Gaps = 1/119 (0%)

Query: 17  FGATIAAAIVMVTSHESTEILNLTFTAKYSDEPVFKYFVIAEAIASGYSLIIVLFTCFQN 76
           F AT++A +VMV+SHE      ++F AKY++ P FKYFVIA +I + Y    VLF   ++
Sbjct: 17  FSATLSAVVVMVSSHEKASFFTVSFEAKYTNSPAFKYFVIANSIVTVYGFF-VLFLPAES 75

Query: 77  SLWRLIVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCDHVSGALV 135
            LWRL+V +D                IAQV K GN++A WLPICG VPKFC+H++GALV
Sbjct: 76  LLWRLVVAMDMVLTMLLISSISAALAIAQVAKNGNNYAAWLPICGSVPKFCNHMTGALV 134


>Medtr7g011090.1 | casparian strip membrane protein | HC |
           chr7:2905231-2907425 | 20130731
          Length = 186

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 19  ATIAAAIVMVTSHESTEILN--LTFTAKYSDEPVFKYFVIAEAIASGYSLIIVLFTCFQ- 75
           AT+A+AI M T+ ES       + F A Y D P  ++FV+A AI SGY ++ +  +    
Sbjct: 39  ATLASAIAMGTTDESLPFFTQFVRFRANYDDLPTLRFFVVASAIVSGYLILSLPLSILHI 98

Query: 76  ----NSLWRLI-VILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCDHV 130
                 + R+I +ILD                I  +  KGN  A W   C Q   FC+ +
Sbjct: 99  IRSSAGMTRVIFIILDTVMLGLLTAGSSAAASIVYLAHKGNRKANWFAFCQQYNSFCERI 158

Query: 131 SGALV 135
           SG+L+
Sbjct: 159 SGSLI 163


>Medtr5g041900.1 | casparian strip membrane protein | HC |
           chr5:18399261-18401571 | 20130731
          Length = 186

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 19  ATIAAAIVMVTSHESTEILN--LTFTAKYSDEPVFKYFVIAEAIASGYSLI--------I 68
           AT+A+A+ M T+ E        + F A+Y D P F +FV+A +I  GY  +        I
Sbjct: 39  ATLASAVAMGTTDERLPFATSFVQFRAEYDDLPSFVFFVLANSIVCGYLALSLILSILHI 98

Query: 69  VLFTCFQNSLWRLIVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCD 128
           V  T  ++ +  L+++LD                I  +   GN+ A W PIC Q   FC+
Sbjct: 99  VRSTAVKSRI--LLIVLDMVMMGLLAAAASAAASIVYIAHYGNTQANWFPICQQYNSFCE 156

Query: 129 HVSGALV 135
            +SG+L+
Sbjct: 157 RISGSLI 163


>Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0097:39509-37693 | 20130731
          Length = 201

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 37  LNLTFTAKYSDEPVFKYFVIAEAIASGYSLIIVLFTC------FQNSLWRLIVILDXXXX 90
           L  T +AK++  P F +FVIA   AS ++L+++          ++     LI ILD    
Sbjct: 65  LTATLSAKFNQTPAFVFFVIANGNASLHNLVMIALDILGPQYDYKGLRLALIAILDMLTM 124

Query: 91  XXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCDHVSGALV 135
                       ++ +G+ GNSHA W  IC +   +C+   GAL+
Sbjct: 125 ALASAGDGAATFMSALGRNGNSHARWDKICDKFESYCNRGGGALI 169


>Medtr4g118810.1 | plant integral membrane protein | HC |
           chr4:49234116-49235835 | 20130731
          Length = 200

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 17  FGATIAAAIVMVTSHESTEI----------LNLTFTAKYSDEPVFKYFVIAEAIASGYSL 66
           F  T+AAAIV+ T  ++T +          LN+  +AK+     F YF++A AIA  Y  
Sbjct: 42  FVLTLAAAIVVGTDKQTTIVPIKVVDSLPPLNVAVSAKWHYLSAFVYFLVANAIACTYGA 101

Query: 67  IIVLFTCFQNS----LW-RLIVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICG 121
           I +L T          W  LI I D                I  +G +GNSH  W  +C 
Sbjct: 102 ISMLLTLLNRGKSKVFWGTLITIFDALMVALLFSGNGAATAIGVLGYQGNSHVRWKKVCN 161

Query: 122 QVPKFCDHVSGALV 135
              K+C  V+ +++
Sbjct: 162 VFDKYCHQVAASII 175


>Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC |
           chr8:37100964-37099766 | 20130731
          Length = 194

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 17  FGATIAAAIVMVTSHESTEILNLT---------FTAKYSDEPVFKYFVIAEAIASGYSLI 67
           F A ++A +VM  + ++   +  T          TAK+   P F YFV+   I S ++L+
Sbjct: 35  FLAAVSATLVMSLNKQTKTFVVATIGSTPITVPLTAKFQHTPAFVYFVVPNGIVSLHNLV 94

Query: 68  IV----LFTCFQNSLWRL--IVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICG 121
           ++    L   F N   +L  I + D                ++++G+ GNSHA W  IC 
Sbjct: 95  MIAMYILGPKFHNKGLQLALIAVFDTMALALASSGDGAATAMSELGRNGNSHAKWNKICD 154

Query: 122 QVPKFCDHVSGALV 135
           +   +C+   G+L+
Sbjct: 155 KFESYCNRGGGSLI 168


>Medtr4g081880.1 | casparian strip membrane protein | HC |
           chr4:31869526-31871135 | 20130731
          Length = 189

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 19  ATIAAAIVMVTSHESTEILN--LTFTAKYSDEPVFKYFVIAEAIASGY---SLIIVLFTC 73
           +T+ +A+ M T+ ++       + F   + D P F +FV A +I  GY   SL++  F  
Sbjct: 40  STLGSALSMGTAKQTMPFATRFVRFKVSFHDLPTFLFFVTANSIVCGYLALSLVLSFFHI 99

Query: 74  FQNSLWR---LIVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCDHV 130
            +    +   L+V LD                I  V   GN  A W P C Q   FC  +
Sbjct: 100 VRTISVKSRILLVFLDTVMFGLLTSGASAAAAIVYVAHYGNPSANWFPFCQQYNSFCGRI 159

Query: 131 SGALV 135
           SG+LV
Sbjct: 160 SGSLV 164


>Medtr1g058540.1 | casparian strip membrane protein | HC |
           chr1:25798149-25796910 | 20130731
          Length = 196

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 19  ATIAAAIVMVTSHESTEILN--LTFTAKYSDEPVFKYFVIAEAIASGYSLIIVLFTCFQN 76
           A++AA I M TS +        L F A Y     F++FVIA A   GY ++ + F+    
Sbjct: 49  ASLAATITMATSDQILPFFTQFLQFEASYDSFSTFQFFVIAMAFVGGYLVLSLPFSIV-- 106

Query: 77  SLWR--------LIVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCD 128
           ++ R         ++ILD                +  +   GN  + WL IC Q   FC 
Sbjct: 107 TIIRPHAPGPRLFLIILDTVFLTLATASGASAAAMVSLAHNGNQDSNWLAICNQFGDFCA 166

Query: 129 HVSGALV 135
             SGA+V
Sbjct: 167 QTSGAVV 173


>Medtr7g083120.1 | plant integral membrane protein | HC |
           chr7:31937630-31935708 | 20130731
          Length = 186

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 20  TIAAAIVMVTSHESTEILNLTFTAKYSDEPVFKYFVIAEAIASGYSLIIVLFTCF----- 74
           T  + +V VT+++S  + ++ F A +     FK+FV A  +    S++ ++F        
Sbjct: 42  TAVSIVVTVTNNQSVMLFSIRFEAHFYYTSSFKFFVAANGVVCFMSVLTLIFNLLMRQQT 101

Query: 75  --QNSLWRLIVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCD 128
             +   + L+ ++D                +  VG+ G  H GW  IC  V KFC 
Sbjct: 102 PQRKDYYFLLFLVDLVMTVLLIAGCSAATAVGYVGQYGEKHVGWTAICDHVQKFCK 157


>Medtr1g058560.1 | casparian strip membrane protein | HC |
           chr1:25810191-25808737 | 20130731
          Length = 195

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 27  MVTSHESTEILN--LTFTAKYSDEPVFKYFVIAEAIASGYSLIIVLFTCF-----QNSLW 79
           M TS +S         F A Y   P F++F+IA AI +GY ++ + F+         +  
Sbjct: 56  MGTSDQSLPFFTQFFQFEASYDSFPAFQFFLIAMAIVAGYLVLSLPFSIVAIIRPHATGP 115

Query: 80  RL-IVILDXXXXXXXXXXXXXXXXIAQVGKKGNSHAGWLPICGQVPKFCDHVSGALV 135
           RL ++ILD                I  +   GN    WL IC Q   FC   SGA+V
Sbjct: 116 RLFLIILDTVFLTLATASAASAASIVYLAHNGNQDTNWLAICNQFGDFCAQTSGAVV 172