Miyakogusa Predicted Gene

Lj4g3v0451190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451190.1 Non Characterized Hit- tr|A9NTQ6|A9NTQ6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,46.46,1e-18,LSD1: zinc finger domain, LSD1 subclass,Zinc finger,
LSD1-type; seg,NULL; FAMILY NOT NAMED,NULL; zf-,CUFF.47264.1
         (141 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088850.1 | LSD1-type zinc finger protein | HC | chr4:3545...   173   4e-44
Medtr4g088850.2 | LSD1-type zinc finger protein | HC | chr4:3545...   142   1e-34
Medtr4g098500.3 | LSD1-type zinc finger protein | HC | chr4:4058...    97   3e-21
Medtr4g098500.1 | LSD1-type zinc finger protein | HC | chr4:4058...    97   4e-21
Medtr4g098500.2 | LSD1-type zinc finger protein | HC | chr4:4058...    97   4e-21
Medtr2g047838.1 | LSD1-type zinc finger protein | HC | chr2:2090...    92   2e-19
Medtr8g089310.2 | LSD1-type zinc finger protein | HC | chr8:3710...    91   3e-19
Medtr8g089310.3 | LSD1-type zinc finger protein | HC | chr8:3710...    91   3e-19
Medtr8g089310.1 | LSD1-type zinc finger protein | HC | chr8:3710...    91   4e-19

>Medtr4g088850.1 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456672 | 20130731
          Length = 133

 Score =  173 bits (439), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 86/95 (90%)

Query: 47  GLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLMYPYGASQ 106
           G AQMVCGSCRRLLSYP GAKHVKCSCCQTVNIVLEADQVGQVKC SCAVLLMYPYGA Q
Sbjct: 39  GFAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQ 98

Query: 107 VRCSACRFVTEIGEHNKRPPWSVQQRKPTPAQTGC 141
           VRCS+CRFVTEIG  NKRPPWSVQQ KPTP + GC
Sbjct: 99  VRCSSCRFVTEIGADNKRPPWSVQQSKPTPPKAGC 133


>Medtr4g088850.2 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456687 | 20130731
          Length = 149

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 69/73 (94%)

Query: 47  GLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLMYPYGASQ 106
           G AQMVCGSCRRLLSYP GAKHVKCSCCQTVNIVLEADQVGQVKC SCAVLLMYPYGA Q
Sbjct: 39  GFAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQ 98

Query: 107 VRCSACRFVTEIG 119
           VRCS+CRFVTEIG
Sbjct: 99  VRCSSCRFVTEIG 111


>Medtr4g098500.3 | LSD1-type zinc finger protein | HC |
           chr4:40586719-40583419 | 20130731
          Length = 128

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 40  PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
           PPP     +AQ+VCG C  LL Y RGA  V+CSCC TVN+ LEA+QV  V C +C +LLM
Sbjct: 38  PPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLM 95

Query: 100 YPYGASQVRCSACRFVTEIG 119
           Y YGA  V+C+ C FVT +G
Sbjct: 96  YQYGARSVKCAVCNFVTSVG 115


>Medtr4g098500.1 | LSD1-type zinc finger protein | HC |
           chr4:40586734-40583419 | 20130731
          Length = 154

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 56/81 (69%), Gaps = 2/81 (2%)

Query: 39  TPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLL 98
            PPP   + +AQ+VCG C  LL Y RGA  V+CSCC TVN+ LEA+QV  V C +C +LL
Sbjct: 63  VPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLL 120

Query: 99  MYPYGASQVRCSACRFVTEIG 119
           MY YGA  V+C+ C FVT +G
Sbjct: 121 MYQYGARSVKCAVCNFVTSVG 141


>Medtr4g098500.2 | LSD1-type zinc finger protein | HC |
           chr4:40586719-40583419 | 20130731
          Length = 154

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 56/81 (69%), Gaps = 2/81 (2%)

Query: 39  TPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLL 98
            PPP   + +AQ+VCG C  LL Y RGA  V+CSCC TVN+ LEA+QV  V C +C +LL
Sbjct: 63  VPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLL 120

Query: 99  MYPYGASQVRCSACRFVTEIG 119
           MY YGA  V+C+ C FVT +G
Sbjct: 121 MYQYGARSVKCAVCNFVTSVG 141


>Medtr2g047838.1 | LSD1-type zinc finger protein | HC |
           chr2:20900056-20906924 | 20130731
          Length = 173

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 6/107 (5%)

Query: 35  QTILTPPPSRPSGL--AQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCA 92
            TI    P  P G+  +Q+ CG CR LL + RGA  V+CSCC T+N+V +++Q+  ++C 
Sbjct: 29  STITPVIPVLPPGMEMSQLYCGGCRTLLMHARGATTVRCSCCNTINLVPDSNQMNHIRCG 88

Query: 93  SCAVLLMYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQRKPTPAQT 139
           +C   LMYP+GA  V+C+ C ++T +   N RPP  V+    TP +T
Sbjct: 89  NCRTTLMYPHGAPSVKCAVCHYITNVDMTNGRPPTPVR----TPNET 131


>Medtr8g089310.2 | LSD1-type zinc finger protein | HC |
           chr8:37104096-37109257 | 20130731
          Length = 189

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 40  PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
           PPP     ++Q+ CG CR LL Y RGA  V+CSCC TVN+   ++QV  V C +C   LM
Sbjct: 48  PPPGM--DMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLM 105

Query: 100 YPYGASQVRCSACRFVTEIGEHNKRPP 126
           YPYGA  V+C+ C ++T I   N R P
Sbjct: 106 YPYGAPSVKCAVCHYITNINMSNGRLP 132


>Medtr8g089310.3 | LSD1-type zinc finger protein | HC |
           chr8:37104112-37109257 | 20130731
          Length = 176

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 40  PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
           PPP     ++Q+ CG CR LL Y RGA  V+CSCC TVN+   ++QV  V C +C   LM
Sbjct: 35  PPPGM--DMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLM 92

Query: 100 YPYGASQVRCSACRFVTEIGEHNKRPPW 127
           YPYGA  V+C+ C ++T I   N R P 
Sbjct: 93  YPYGAPSVKCAVCHYITNINMSNGRLPI 120


>Medtr8g089310.1 | LSD1-type zinc finger protein | HC |
           chr8:37102205-37109257 | 20130731
          Length = 223

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 40  PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
           PPP     ++Q+ CG CR LL Y RGA  V+CSCC TVN+   ++QV  V C +C   LM
Sbjct: 82  PPPGMD--MSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLM 139

Query: 100 YPYGASQVRCSACRFVTEIGEHNKRPPW 127
           YPYGA  V+C+ C ++T I   N R P 
Sbjct: 140 YPYGAPSVKCAVCHYITNINMSNGRLPI 167