Miyakogusa Predicted Gene

Lj4g3v0451060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451060.1 Non Characterized Hit- tr|B8A6M6|B8A6M6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,47.25,3e-18,HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; HLH,Helix-loop-helix domain; no
de,CUFF.47251.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094762.1 | basic helix loop helix (BHLH) DNA-binding fami...   408   e-114
Medtr4g094758.1 | transcription factor | HC | chr4:38910460-3890...   366   e-101
Medtr7g083900.2 | basic helix loop helix protein BHLH23 | HC | c...    52   9e-07
Medtr7g083900.3 | basic helix loop helix protein BHLH23 | HC | c...    52   9e-07
Medtr7g083900.1 | basic helix loop helix protein BHLH23 | HC | c...    52   9e-07
Medtr3g498695.1 | BHLH transcriptional factor | HC | chr3:450934...    52   1e-06
Medtr3g498695.2 | BHLH transcriptional factor | HC | chr3:450934...    52   1e-06

>Medtr4g094762.1 | basic helix loop helix (BHLH) DNA-binding family
           protein | HC | chr4:38924047-38922213 | 20130731
          Length = 486

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/405 (58%), Positives = 266/405 (65%), Gaps = 44/405 (10%)

Query: 12  MDTNLVQDVIDDLPYQQSMWDPNVQEFQNMNYANHLEH-QPHEQQFHQ-IEAQ----SYN 65
           MD +LVQ+V     YQ S WDP+VQ+   M+Y NH EH Q  EQQ+ Q IEAQ    SYN
Sbjct: 98  MDNHLVQEV-----YQNSTWDPSVQD---MDYVNHQEHRQLSEQQYQQFIEAQNHNQSYN 149

Query: 66  PSSIMDPPYPAID----LHLPTCSA-----------SSLLTTPPNFHNSMGFLGDLPIGS 110
           PS+I+DP YP+ D    L+LP CS+           ++    PPNFHNSM FLGDLPIGS
Sbjct: 150 PSTILDPHYPSPDVLNLLNLPRCSSSLLTNSSTICMTNPTQNPPNFHNSMTFLGDLPIGS 209

Query: 111 DNTSAASSVLCDPLFHLNQVPPPPTAFRELFQSLPRGYSFPMSSQNXXXXXXXXXXXXXX 170
            + ++ SSVL DPL+ LN +PP P A RELFQSLPRGYS P +S+N              
Sbjct: 210 SDNTSGSSVLYDPLYPLN-LPPQPPALRELFQSLPRGYSMPTNSRNGSLFGGGDEMEGDG 268

Query: 171 XXXQLDMGVLEFNTINRVTASVXXXXXXXXXX-----XXXXXQLNGKYKILRSLIPSPTK 225
                   VLEFN   RVTASV                    QLNGKYKILR LIPSPTK
Sbjct: 269 DMG-----VLEFN---RVTASVGKGRGGKATKHFATEKQRREQLNGKYKILRDLIPSPTK 320

Query: 226 IDRASVVGDAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDDGAESCNIKPFGDPD 285
            DRASVVGDAI+YIRELIRT+NELK+LV              TEDD AESCNIKPFGDPD
Sbjct: 321 TDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGREMCKRLKTEDDAAESCNIKPFGDPD 380

Query: 286 GHIRTSWLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVLDELQLEIHHVAGGH 345
           G IRTSWLQRKSKDSE            KL QRKK+NCLLF SKVLDELQLE+HHVAGGH
Sbjct: 381 GSIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKVNCLLFVSKVLDELQLELHHVAGGH 440

Query: 346 VGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAAAVPHSS 390
           VGEYCSFL NSK  EGSSVYASAIANR+IDV+DTQ YAA +PH S
Sbjct: 441 VGEYCSFLFNSKVNEGSSVYASAIANRVIDVMDTQ-YAAGLPHIS 484


>Medtr4g094758.1 | transcription factor | HC |
           chr4:38910460-38908595 | 20130731
          Length = 483

 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/396 (54%), Positives = 248/396 (62%), Gaps = 41/396 (10%)

Query: 12  MDTNLVQDVIDDLPYQQSMWDPNVQEFQNMNYANHLEHQPHEQQFHQIE--AQSYNPSSI 69
           MD  L Q+V     YQ S WDP+ Q+   M+YANH       Q++HQ+    QSYNPS+ 
Sbjct: 109 MDNLLEQEV-----YQNSSWDPSAQD---MDYANH-------QEYHQLHNHKQSYNPSTT 153

Query: 70  MDPPYPA---IDLHLPTCSASSLLTTP------------PNFHNSMGFLGDLPIGSDNTS 114
             P YP+   ++LH P  SASSLLT P            PNFH SM FLGDLPIGSDN S
Sbjct: 154 QAPHYPSPDVLNLHFPRSSASSLLTNPSTICITNPTQKPPNFHYSMSFLGDLPIGSDN-S 212

Query: 115 AASSVLCDPLFHLNQVPPPPTAFRELFQSLPRGYSFPMSSQNXXXXXXXXXXXXXXXXXQ 174
           + SSVL DPLF LN +P    A REL QSLPR YS P +S+N                  
Sbjct: 213 SGSSVLYDPLFPLN-LPAQSPALRELPQSLPRVYSMPTNSRNGSPFGGGDEMEGDGGMG- 270

Query: 175 LDMGVLEFNTINR-VTASVXXXXXXXXXXXXXXXQLNGKYKILRSLIPSPTKIDRASVVG 233
               V +FN +   V                   QL G+YKILRSLIP+ TK DRASVVG
Sbjct: 271 ----VSQFNKVTAFVGKGKGKATEHLTTEKQRREQLKGRYKILRSLIPNSTKDDRASVVG 326

Query: 234 DAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDDGAESCNIKPFGDPDGHIRTSWL 293
           DAI+Y+RELIRT+NELK+LV              TED  AESC++KPFGDPDG IRTSWL
Sbjct: 327 DAIEYLRELIRTVNELKLLVEKKRHEIEICKRHKTEDYAAESCHMKPFGDPDGSIRTSWL 386

Query: 294 QRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVLDELQLEIHHVAGGHVGEYCSFL 353
           QRKSKDSE            KL QRKK+NCLLF SKVLDELQLE++HVAGGHVGEYCSFL
Sbjct: 387 QRKSKDSEVDVRIIDDDVTIKLFQRKKVNCLLFVSKVLDELQLELNHVAGGHVGEYCSFL 446

Query: 354 LNSKTIEGSSVYASAIANRMIDVLDTQYYAAAVPHS 389
            NSK IEGSSV+ASAIANR+IDVLDTQ YAA VPH+
Sbjct: 447 FNSKVIEGSSVHASAIANRVIDVLDTQ-YAAVVPHN 481


>Medtr7g083900.2 | basic helix loop helix protein BHLH23 | HC |
           chr7:32316153-32319262 | 20130731
          Length = 476

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 35/42 (83%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDA+DY++EL++ +N L
Sbjct: 297 KLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNL 338


>Medtr7g083900.3 | basic helix loop helix protein BHLH23 | HC |
           chr7:32316216-32319397 | 20130731
          Length = 475

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 35/42 (83%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDA+DY++EL++ +N L
Sbjct: 297 KLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNL 338


>Medtr7g083900.1 | basic helix loop helix protein BHLH23 | HC |
           chr7:32316216-32319242 | 20130731
          Length = 475

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 35/42 (83%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDA+DY++EL++ +N L
Sbjct: 297 KLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNL 338


>Medtr3g498695.1 | BHLH transcriptional factor | HC |
           chr3:45093427-45090542 | 20130731
          Length = 485

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 36/42 (85%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDAI+Y++EL++ +N+L
Sbjct: 309 KLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL 350


>Medtr3g498695.2 | BHLH transcriptional factor | HC |
           chr3:45093436-45090542 | 20130731
          Length = 484

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 36/42 (85%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDAI+Y++EL++ +N+L
Sbjct: 309 KLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL 350