Miyakogusa Predicted Gene

Lj4g3v0450850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450850.1 Non Characterized Hit- tr|J3M2Q0|J3M2Q0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G3,67.86,6e-19,seg,NULL; Clathrin_lg_ch,Clathrin light chain;
coiled-coil,NULL; PROTEIN BINDING / PROTEIN TRANSPORT,CUFF.47233.1
         (177 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088980.1 | clathrin light chain-like protein | HC | chr4:...   198   2e-51
Medtr2g013220.1 | clathrin light chain-like protein | HC | chr2:...   176   1e-44
Medtr8g098515.1 | clathrin light chain-like protein | HC | chr8:...   134   3e-32

>Medtr4g088980.1 | clathrin light chain-like protein | HC |
           chr4:35592996-35589688 | 20130731
          Length = 306

 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 130/179 (72%), Gaps = 3/179 (1%)

Query: 1   MSFAVDDLNFDAADD-TXXXXXXXXXXPGDDAPVEHSTTAAPESPDIFGFSDPNPNYSQS 59
           MSF V++ +F A DD +            +D PV+H TTAAPESPD+FGFSD +P+Y+QS
Sbjct: 1   MSFTVNEDHFAAGDDDSYSGYGGFSSYSAEDVPVDH-TTAAPESPDVFGFSDQDPSYAQS 59

Query: 60  PFEPEHVVENGDE-NGYDDGVFVSDGPVLPPPGDMEPEEGYALREWRRQNAIQXXXXXXX 118
           PFEP H +ENG+   G+DD VFVSDGPVLPPP +MEPEEG  LREWRRQNAIQ       
Sbjct: 60  PFEPVHAMENGNGYGGHDDDVFVSDGPVLPPPAEMEPEEGNVLREWRRQNAIQLDEKEKR 119

Query: 119 XXXXXXXXXXXAEDYKVAFYEKRKLNVESNKVQNREREKLYLANQEKFHKEADKNYWKA 177
                      AEDYKV FYEKRKLNVE+NKVQNREREKLYLANQE FHKEADKNYWKA
Sbjct: 120 EKEMRLKIIEEAEDYKVGFYEKRKLNVETNKVQNREREKLYLANQENFHKEADKNYWKA 178


>Medtr2g013220.1 | clathrin light chain-like protein | HC |
           chr2:3526744-3522489 | 20130731
          Length = 313

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/151 (64%), Positives = 112/151 (74%), Gaps = 4/151 (2%)

Query: 30  DAPVEHSTTAAPESPDIFGFSDPNPNYSQSPFEP---EHVVENGDENGYDDGVFVSDGPV 86
           D  V+H+  A   SP+I+GFSDPNP YS SPFE    E+  +NG+  G DDGVFVSDGP+
Sbjct: 43  DVTVDHAA-AETTSPEIYGFSDPNPGYSPSPFESVTVENGNDNGNGYGDDDGVFVSDGPI 101

Query: 87  LPPPGDMEPEEGYALREWRRQNAIQXXXXXXXXXXXXXXXXXXAEDYKVAFYEKRKLNVE 146
           LPPPG+ME EEGYALREWRRQNAI+                  AE+YKVAFYEKRKLNVE
Sbjct: 102 LPPPGEMESEEGYALREWRRQNAIELEEKEKREKEMRLKIIEEAEEYKVAFYEKRKLNVE 161

Query: 147 SNKVQNREREKLYLANQEKFHKEADKNYWKA 177
           +NKVQNREREKL++ANQEKFHKEADK YWK 
Sbjct: 162 TNKVQNREREKLFVANQEKFHKEADKAYWKT 192


>Medtr8g098515.1 | clathrin light chain-like protein | HC |
           chr8:41094060-41095751 | 20130731
          Length = 354

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 85/132 (64%), Gaps = 11/132 (8%)

Query: 47  FGFSDPNPNYS-QSPFEPEHVVENGDENGYDDGVFVSDGPVLPPPGDMEPEEGYALREWR 105
           FG S PNPN    +PF+          N  DDG+F S+GPVLP P  M+ EEG+A REWR
Sbjct: 85  FGVSSPNPNPDFVTPFQ---------TNETDDGIFSSEGPVLPDPTQMQ-EEGFARREWR 134

Query: 106 RQNAIQXXXXXXXXXXXXXXXXXXAEDYKVAFYEKRKLNVESNKVQNREREKLYLANQEK 165
           R+NAI                   AED+K AFYEKRKLN E+NK  NRE+EK+YLANQEK
Sbjct: 135 RKNAIHLEEKEKREKEMRNQIIKEAEDFKEAFYEKRKLNCETNKQTNREKEKIYLANQEK 194

Query: 166 FHKEADKNYWKA 177
           FHKEADK+YWKA
Sbjct: 195 FHKEADKHYWKA 206