Miyakogusa Predicted Gene

Lj4g3v0450530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450530.1 Non Characterized Hit- tr|I1LWN6|I1LWN6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,80.56,0,Short
conserved domain in transcriptional re,Plus-3 domain, subgroup;
PLUS3,Plus-3; Plus-3,Plus-3; c,CUFF.47237.1
         (636 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g089070.1 | RNA polymerase-associated RTF1-like protein | ...   863   0.0  
Medtr7g099060.1 | RNA polymerase-associated RTF1-like protein | ...   627   e-179
Medtr4g032885.1 | plus-3 domain protein | HC | chr4:11370029-113...   399   e-111

>Medtr4g089070.1 | RNA polymerase-associated RTF1-like protein | HC
           | chr4:35689130-35693421 | 20130731
          Length = 655

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/638 (70%), Positives = 483/638 (75%), Gaps = 5/638 (0%)

Query: 1   MADLENLLLEXXXXXXXXXXXXHSLPPXXXXXXXXXXXXXXXXXXXXXXXELNYASRKKG 60
           MADLENLLLE            HSLPP                       ELNYASRK  
Sbjct: 1   MADLENLLLEAAGRTGAAGRNRHSLPPSRRRRDGSYSDGGSDSRDDDSDDELNYASRKP- 59

Query: 61  SGSQVPVKKRLDPTKRDDDLGSQEEEGDDDGRSDHEGDSSDESNIGDDLYKDEDDRRKLS 120
           SGSQVP+KKRLDP  RDDDLGSQEE  DDDGRSD EGD+SDESNIGDDLYKDEDDRRKLS
Sbjct: 60  SGSQVPLKKRLDPADRDDDLGSQEE-ADDDGRSDREGDTSDESNIGDDLYKDEDDRRKLS 118

Query: 121 EMSELQREMILSDRAAKKDDKSLLGKIALKRDKGKATVPRKQSPPLXXXXXXXXXXXXXX 180
           EMSELQREMILSDRA+KKDDKSLLGKIA KR+KGKA +  KQSPPL              
Sbjct: 119 EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSRMRASARSADR 178

Query: 181 XXKNEALNELRAKRMKQQDPEAHRRLKEATRSSGTRHFSPPKRKPFXXXXXXXXXXXXXX 240
             KNEALNELRAKR+KQQDPEAHRRL+EA+RSSG R+FSPPKRK F              
Sbjct: 179 SAKNEALNELRAKRLKQQDPEAHRRLREASRSSGPRNFSPPKRKSFTSANLSSSSHSDSE 238

Query: 241 XXXXXXXXXXXXXXXXXXXXXXRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIV 300
                                 RALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIV
Sbjct: 239 SRSHSDDEGSTGDGGIADSDDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIV 298

Query: 301 GCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQYKLENKITYKYLNVVWGNESSAARWQM 360
           GCFVRVGIGRSK+GPIYRLCMVKNVD+SDPDRQYKLENK TYKYLNVVWGNESSAARWQM
Sbjct: 299 GCFVRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENKTTYKYLNVVWGNESSAARWQM 358

Query: 361 AMISDSAPLEEEFKQWVKEVERSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEK 420
           AMISDS PLEEE+KQWVKEVERSGGRMPSKQDVL+KKQAI K ITFVYSAATVKQM+QEK
Sbjct: 359 AMISDSPPLEEEYKQWVKEVERSGGRMPSKQDVLDKKQAINKIITFVYSAATVKQMIQEK 418

Query: 421 KSASSRPLNVAAEKDRLRREMEIAISKNDESEVERIKARLIELEASRQEKVKDAKALKLA 480
           KSASSRPLN+AAEKDRLR ++E A  KND++EVERIKARL+ELEASR  KVKDAKALKLA
Sbjct: 419 KSASSRPLNIAAEKDRLRSDLERAQGKNDDAEVERIKARLLELEASRHAKVKDAKALKLA 478

Query: 481 EMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSMNYYVSKPGDKAASGNNST 540
           EMNRKNR ENFKNASE++P+ TGLK G+AGYDPFSRRWTRS NYYV+ P +KAA+ NN+T
Sbjct: 479 EMNRKNRVENFKNASELRPL-TGLKEGDAGYDPFSRRWTRSRNYYVATPSEKAAALNNNT 537

Query: 541 NGIVADAGSNGTGVP--AEXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTESYSLHNFELP 598
            G+V+DAG+NGTGVP  AE                GKLVDTSAPVDQGTES +LHNFELP
Sbjct: 538 VGLVSDAGANGTGVPVTAESGAVATAIALEAAADAGKLVDTSAPVDQGTESNTLHNFELP 597

Query: 599 ISXXXXXXXXXXXXXXXXXMARKQKIEATVGFKVLEND 636
           +S                 MARKQ+IE+TVGFK+ END
Sbjct: 598 VSLALLHKYGGAQGAQAGFMARKQRIESTVGFKLSEND 635


>Medtr7g099060.1 | RNA polymerase-associated RTF1-like protein | HC
           | chr7:39696028-39698424 | 20130731
          Length = 624

 Score =  627 bits (1616), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 332/542 (61%), Positives = 384/542 (70%), Gaps = 10/542 (1%)

Query: 96  EGDSSDESNIGDDLYKDEDDRRKLSEMSELQREMILSDRAAKKDDKSLLGKIALKRDKGK 155
           E D SDES++GDDLYKDEDDR+KLSEM+ELQREMILSDRAAKKDDK +L KIA KR+KG 
Sbjct: 72  EVDRSDESDVGDDLYKDEDDRKKLSEMTELQREMILSDRAAKKDDKDILSKIASKREKG- 130

Query: 156 ATVPRKQSPPL-XXXXXXXXXXXXXXXXKNEALNELRAKRMKQQDPEAHRRLKEATRSSG 214
             V R+++PPL                 K+ ALNELRAKR+KQ+DPE  R LKE ++S+G
Sbjct: 131 -NVSRRETPPLPSSRMMSSTRSYDRSAAKDGALNELRAKRLKQRDPETQRELKEGSKSAG 189

Query: 215 TRHFSPPKRKPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALSGSEGLSFQ 274
           +   S   +  F                                    + + G E  SF+
Sbjct: 190 SGVLSKIGKPNFSSSSHSESESRSRSDEDVEGLSEGEGIIDSNDD---KIMPGFEKPSFE 246

Query: 275 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQY 334
           DI++ITI RSKL KWFMEPFFEELIVGCFVRVGIGRSK+GPIYRLCMVKNVDASDPDR Y
Sbjct: 247 DIQDITIPRSKLTKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPDRLY 306

Query: 335 KLENKITYKYLNVVWGNESSAARWQMAMISDSAPLEEEFKQWVKEVERSGGRMPSKQDVL 394
           KL+NK TYKYLNVVWGNE+SAARWQMAM+SDS PLEEEFKQWVKEVERSGGRM  + DV+
Sbjct: 307 KLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLKRLDVV 366

Query: 395 EKKQAIQKAITFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMEIAISKNDESEVE 454
           EKKQA+ K   FVYSAATVKQML+EKKS S RPLNVAAEKDRL+RE+EIA SKND + VE
Sbjct: 367 EKKQAMLKINNFVYSAATVKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKNDAAGVE 426

Query: 455 RIKARLIELEASRQEKVKDAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPF 514
           +I+ +L ELE SR+ + KDAKAL+L+EMNRKNR ENFKNAS++KPVN  LKAGEAGYDPF
Sbjct: 427 KIQTKLQELEESRKSREKDAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGEAGYDPF 486

Query: 515 SRRWTRSMNYYVSKPGDKAASGNNSTNGIVADAGSNGTGVPAEXXXXXXXXXXXXXXXXG 574
           SRRWTRS NYY SKP ++A +GNN++ G V D GSNG G                     
Sbjct: 487 SRRWTRSRNYYNSKPAEEATAGNNTSGGAVGDGGSNGIGAGMAATTEALEAAAGAG---- 542

Query: 575 KLVDTSAPVDQGTESYSLHNFELPISXXXXXXXXXXXXXXXXXMARKQKIEATVGFKVLE 634
           KLVDT APVD+GTES  LH+FELPIS                 MA+KQ+IE  VGF+V E
Sbjct: 543 KLVDTRAPVDEGTESNVLHDFELPISLAMLQKFGGAKGVQAGFMAKKQRIEEVVGFRVPE 602

Query: 635 ND 636
           ND
Sbjct: 603 ND 604


>Medtr4g032885.1 | plus-3 domain protein | HC |
           chr4:11370029-11368086 | 20130731
          Length = 647

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/369 (54%), Positives = 259/369 (70%), Gaps = 17/369 (4%)

Query: 272 SFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPD 331
           +F+DIKEITI+RS+L KW  EPFFEELIVGCFVRVGIG+S++ P+YRLCMV+ V+  +P+
Sbjct: 272 TFEDIKEITIKRSRLVKWLNEPFFEELIVGCFVRVGIGKSENVPVYRLCMVQKVECGNPN 331

Query: 332 RQYKLENKITYKYLNVVWGNESSAARWQMAMISDSAPLEEEFKQWVKEVERSGGRMPSKQ 391
           + YK+ENK+T+KYL  VWG+E+SA + Q+A++S+SAPLE+EFK W++EVER+   MPSK 
Sbjct: 332 KHYKVENKVTHKYLVCVWGSENSAKKIQVAVVSESAPLEKEFKHWIREVERTCSYMPSKV 391

Query: 392 DVLEKKQAIQKAITFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMEIAISKNDES 451
           +++EKK+AI+K  T+VYSAATVKQML+EKK+A SRPLNVA EKD+L+RE E+A SKNDE+
Sbjct: 392 NIIEKKEAIRKTNTYVYSAATVKQMLEEKKTAPSRPLNVAVEKDKLKREFELAESKNDEA 451

Query: 452 EVERIKARLIELEASRQEKVKDAKALKLAEMNRKNRFENFKNASEMKP-VNTGLKAGEAG 510
            +ERI+ +L ELEA R+ +  + KA++L EMNRKNR EN+KN SE +  +N  LKAGE G
Sbjct: 452 WMERIQTKLAELEALRRARENNVKAIRLEEMNRKNRVENYKNLSEHRNMMNANLKAGEEG 511

Query: 511 YDPFSRRWTRSMNYYVSKPG--DKAASGNNSTNGIVADAGSNGTGVPAEXXXXXXXXXXX 568
           YDPFSRRWTRS NYY    G   K   G    +  + D  +    +              
Sbjct: 512 YDPFSRRWTRSRNYYNEDQGKESKEEDGKEEKDDKIVDVEATKESL-------------K 558

Query: 569 XXXXXGKLVDTSAPVDQGTESYSLHNFELPISXXXXXX-XXXXXXXXXXXMARKQKIEAT 627
                GKL DT APVD  TES  LH+FEL IS                   ARKQKIEAT
Sbjct: 559 EAANAGKLTDTIAPVDVETESNMLHDFELQISLAELQKFGSGEEQRRNVFFARKQKIEAT 618

Query: 628 VGFKVLEND 636
           +G+++ END
Sbjct: 619 IGYQIPEND 627



 Score = 89.7 bits (221), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 98/169 (57%), Gaps = 22/169 (13%)

Query: 53  NYASRKKGSGSQVPVKKRLD--PTKRDDDLGSQEEEGDDDG-----RSD--HEGDSSDES 103
           N   R K   SQVP+KKRL+   TKR    GS E++   +G     R D   E DSS+ES
Sbjct: 50  NGNKRPKTITSQVPLKKRLELETTKR----GSNEDKNKGEGIESTDREDGVREDDSSEES 105

Query: 104 -NIGDDLYKDEDDRRKLSEMSELQREMILSDRAAKKDDKSLLGKIA--LKRDK----GKA 156
             IG DLYK+EDD+++L++M+EL+REMILS+RA KK DK +  K+   +KR+K     +A
Sbjct: 106 EGIGGDLYKNEDDKKRLAKMTELEREMILSERATKKGDKEVKEKMIMRMKREKNNSSARA 165

Query: 157 TVPRKQSPPL--XXXXXXXXXXXXXXXXKNEALNELRAKRMKQQDPEAH 203
           +    QS PL                  K +AL+ELRAKRMKQQ  + H
Sbjct: 166 SSSNNQSSPLPSSTKIRSSARNAEKTAAKGDALSELRAKRMKQQVTDNH 214