Miyakogusa Predicted Gene

Lj4g3v0450460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450460.1 Non Characterized Hit- tr|I3S222|I3S222_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,84.71,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
DUF1218,Protein of unknown function DUF1218,CUFF.47219.1
         (176 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-357252...   299   1e-81
Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-357253...   299   1e-81
Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-357252...   299   1e-81
Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-357252...   299   1e-81
Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-336429...   182   1e-46
Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-238049...   164   4e-41
Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-236539...   164   4e-41
Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-496023...   130   5e-31
Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-496128...   109   1e-24
Medtr4g077250.1 | transmembrane protein, putative | HC | chr4:29...    56   2e-08
Medtr1g109690.1 | fiber protein Fb34 | LC | chr1:49609891-496095...    55   5e-08

>Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-35725261
           | 20130731
          Length = 183

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/170 (84%), Positives = 159/170 (93%)

Query: 1   MASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLFI 60
           MASSL+L VVF+FD+IAFALAV AEQRR++A+L +N EGR+YCQYDSDIATGLGVGSLFI
Sbjct: 1   MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFI 60

Query: 61  LVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTK 120
           LV+ QVIIMVVTRCLCCG+AMRPSGSRSWAICLFITTWLTF+IAASCLLAGSV+NAYHTK
Sbjct: 61  LVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTK 120

Query: 121 YRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPLP 170
           YRDL+G+ APSCQTLRKGVFGAGAAFIVLTGI SELYYVSFSKA    +P
Sbjct: 121 YRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVP 170


>Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-35725376
           | 20130731
          Length = 183

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/170 (84%), Positives = 159/170 (93%)

Query: 1   MASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLFI 60
           MASSL+L VVF+FD+IAFALAV AEQRR++A+L +N EGR+YCQYDSDIATGLGVGSLFI
Sbjct: 1   MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFI 60

Query: 61  LVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTK 120
           LV+ QVIIMVVTRCLCCG+AMRPSGSRSWAICLFITTWLTF+IAASCLLAGSV+NAYHTK
Sbjct: 61  LVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTK 120

Query: 121 YRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPLP 170
           YRDL+G+ APSCQTLRKGVFGAGAAFIVLTGI SELYYVSFSKA    +P
Sbjct: 121 YRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVP 170


>Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-35725261
           | 20130731
          Length = 183

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/170 (84%), Positives = 159/170 (93%)

Query: 1   MASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLFI 60
           MASSL+L VVF+FD+IAFALAV AEQRR++A+L +N EGR+YCQYDSDIATGLGVGSLFI
Sbjct: 1   MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFI 60

Query: 61  LVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTK 120
           LV+ QVIIMVVTRCLCCG+AMRPSGSRSWAICLFITTWLTF+IAASCLLAGSV+NAYHTK
Sbjct: 61  LVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTK 120

Query: 121 YRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPLP 170
           YRDL+G+ APSCQTLRKGVFGAGAAFIVLTGI SELYYVSFSKA    +P
Sbjct: 121 YRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVP 170


>Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-35725261
           | 20130731
          Length = 183

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/170 (84%), Positives = 159/170 (93%)

Query: 1   MASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLFI 60
           MASSL+L VVF+FD+IAFALAV AEQRR++A+L +N EGR+YCQYDSDIATGLGVGSLFI
Sbjct: 1   MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFI 60

Query: 61  LVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTK 120
           LV+ QVIIMVVTRCLCCG+AMRPSGSRSWAICLFITTWLTF+IAASCLLAGSV+NAYHTK
Sbjct: 61  LVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTK 120

Query: 121 YRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPLP 170
           YRDL+G+ APSCQTLRKGVFGAGAAFIVLTGI SELYYVSFSKA    +P
Sbjct: 121 YRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVP 170


>Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-33642906
           | 20130731
          Length = 186

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 125/173 (72%), Gaps = 1/173 (0%)

Query: 1   MASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAE-GREYCQYDSDIATGLGVGSLF 59
           MAS L+L +VF+FD+IAF LAV AEQRR+TA ++ + E    YC YDSD ATG GV +  
Sbjct: 1   MASKLLLIIVFVFDVIAFGLAVAAEQRRSTAKIVPDKEQNYNYCVYDSDRATGYGVVAFL 60

Query: 60  ILVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHT 119
            L+  Q++IMVV+RC CCGK ++P GSR+ AI LFI  W+ FIIA  CLLAGSV NAYHT
Sbjct: 61  FLMISQIVIMVVSRCFCCGKPLKPGGSRACAIVLFIVCWVFFIIAEVCLLAGSVENAYHT 120

Query: 120 KYRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPLPML 172
           KYR L   + PSC+T+RKGVF AGAAF+  T I S+ YY+++S A  +  P L
Sbjct: 121 KYRTLFVSDPPSCETVRKGVFAAGAAFVFFTSIVSKFYYINYSSARESFQPYL 173


>Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-23804986
           | 20130731
          Length = 191

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   ASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGRE-YCQYDSDIATGLGVGSLFI 60
            S+LV  +V +F ++AF  AV AE+RR+  ++ +     E YC Y SD+ATG GVG+   
Sbjct: 6   GSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPGTNETYCVYSSDVATGYGVGAFLF 65

Query: 61  LVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTK 120
           L+S + ++M VT+C+C G+ + P G+R+W+I  F+++W TF++A SCL+AG+ +NAYHTK
Sbjct: 66  LLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTK 125

Query: 121 YRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPL 169
           YR ++     SC++LRKG+F  GA FIV+T + +  YY+ F+KA   PL
Sbjct: 126 YRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPL 174


>Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-23653955
           | 20130731
          Length = 191

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   ASSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGRE-YCQYDSDIATGLGVGSLFI 60
            S+LV  +V +F ++AF  AV AE+RR+  ++ +     E YC Y SD+ATG GVG+   
Sbjct: 6   GSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPGTNETYCVYSSDVATGYGVGAFLF 65

Query: 61  LVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTK 120
           L+S + ++M VT+C+C G+ + P G+R+W+I  F+++W TF++A SCL+AG+ +NAYHTK
Sbjct: 66  LLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTK 125

Query: 121 YRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPL 169
           YR ++     SC++LRKG+F  GA FIV+T + +  YY+ F+KA   PL
Sbjct: 126 YRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPL 174


>Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-49602362
           | 20130731
          Length = 193

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 3   SSLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNA-EGREYCQYDSDIATGLGVGSLFIL 61
           S  ++ ++    ++AF  A+ AE+RR+ A ++ +  + R +C Y +D +T  GV +  +L
Sbjct: 4   SVTIIVLIISLHLLAFVFAIGAERRRSEAKVVPDEYDERTFCVYTTDASTVYGVAAFSLL 63

Query: 62  VSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTKY 121
           +  Q ++  VTRCLCCGK +    S + A+  FI +W  F+ A +CLLAGS RNAYHTKY
Sbjct: 64  LLSQTVLNAVTRCLCCGKGLISGCSTTCAVIFFILSWTGFLAAEACLLAGSARNAYHTKY 123

Query: 122 RDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKA 164
           R     +  SC TLRKGVF AGAA  + + +AS LYY + +KA
Sbjct: 124 RGNFVTHDLSCATLRKGVFAAGAALTLFSMLASILYYWAHAKA 166


>Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-49612840
           | 20130731
          Length = 190

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 93/172 (54%), Gaps = 2/172 (1%)

Query: 1   MASSL-VLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLF 59
           MA S+ VL +V    + AF  A  AE  R  A  L N +G   C Y +D +T  G  +  
Sbjct: 1   MAFSISVLIIVIFAHLFAFFYAFRAEVNRYWAEELPNDDG-TICVYTTDASTFYGFVAFS 59

Query: 60  ILVSCQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHT 119
            L+  QV + ++TRC CCGK + P  S S AI  +I +W+ F+ A +CLL GS  +AY T
Sbjct: 60  FLLVNQVFLNLITRCFCCGKGLVPGRSTSCAIICYILSWIGFLAAEACLLVGSTTSAYKT 119

Query: 120 KYRDLMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPLPM 171
           KY+        SC  LRKGVF  GA   + + + S LYY ++ KA +A   M
Sbjct: 120 KYQGYYSTLGLSCSALRKGVFAVGAVLTLFSMLTSILYYWAYCKADIADFWM 171


>Medtr4g077250.1 | transmembrane protein, putative | HC |
           chr4:29600281-29602521 | 20130731
          Length = 211

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 5   LVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLFILVSC 64
           +V  +V    +++ A +  AE  R     ++     + C Y    A  LG+ +   L+  
Sbjct: 7   IVCCIVGFLGLLSAATSFAAEATRIKGYQIQFINPNQ-CIYPRSPALPLGLTAALSLMIS 65

Query: 65  QVIIMVVTRCLCCGKAMR-PSGSRSWAICLFITTWLTFIIAASCLLAGSVRNAYHTKYRD 123
           Q++I V T C+CC K+ R P  + + A+  F+ +W T++IA   LL G+  N    +   
Sbjct: 66  QIVINVSTGCICCRKSSRIPDSNWTVALACFVLSWFTYVIAFLLLLTGAALNDQRGEESV 125

Query: 124 LMGDNAPSCQTLRKGVFGAGAAFIVLTGIASELYYVSFSKAIMAPLPM 171
             G     C  ++ GVF  GA   + + +   +YY++  +   A  P 
Sbjct: 126 YFGTY--YCYVVKPGVFAGGAILSLASVVFGIVYYITLMEGKNARTPF 171


>Medtr1g109690.1 | fiber protein Fb34 | LC |
          chr1:49609891-49609504 | 20130731
          Length = 98

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 4  SLVLAVVFLFDIIAFALAVVAEQRRNTASLLRNAEGREYCQYDSDIATGLGVGSLFILVS 63
          S  LA +F+  ++AF  A   E+ R  A  + N +    C YD+D +T  G G+ F L+ 
Sbjct: 6  SFSLANIFV-HLLAFFCAFRGEENRIWALEIPNVD-ETICVYDTDDSTIYGFGAFFCLLI 63

Query: 64 CQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITTW 98
           QV + ++TRC CCGK +    + + AI  +I +W
Sbjct: 64 NQVFLNLITRCFCCGKGLISGRANTCAIISYILSW 98