Miyakogusa Predicted Gene

Lj4g3v0450090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450090.1 Non Characterized Hit- tr|Q1SKW7|Q1SKW7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,49.11,2e-18,seg,NULL,CUFF.47185.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g090440.1 | transmembrane protein, putative | HC | chr4:35...   209   8e-55
Medtr2g012780.1 | transmembrane protein, putative | HC | chr2:32...   141   3e-34
Medtr2g005740.2 | transmembrane protein, putative | HC | chr2:29...    89   2e-18
Medtr2g005740.1 | transmembrane protein, putative | HC | chr2:29...    88   3e-18

>Medtr4g090440.1 | transmembrane protein, putative | HC |
           chr4:35836726-35840521 | 20130731
          Length = 149

 Score =  209 bits (532), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 108/154 (70%), Positives = 115/154 (74%), Gaps = 5/154 (3%)

Query: 1   MVVEDHNNNSNGWPPTGAPLNLQRDEHWSSFDSSVNAVSFGFVATAILISMFLVMAIFER 60
           M VEDH   SN WPP  +PL+L RDEHW++FDSSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1   MTVEDH---SNEWPPMASPLDLHRDEHWTNFDSSVNAVSFGFVATAILISMFLVMAIFER 57

Query: 61  FLXXXXXXXXXXXXXXXGDVESQMGFGGKLGYPSPKMSVYDSGVSVLMPGDAIPTFIAHP 120
           FL                DVESQM   GKL +PSPKM+VY + VSVLMPGD IPTFIAH 
Sbjct: 58  FLRPISPPMSPPGRRSQRDVESQMSSYGKLSHPSPKMTVYSTEVSVLMPGDVIPTFIAH- 116

Query: 121 APAPCCPERNSWPSHQQNTLPCSTSTTRPVSNEV 154
            PAPCCPER  WPSHQ NTLPCSTS TRP  NEV
Sbjct: 117 -PAPCCPERIVWPSHQHNTLPCSTSNTRPNINEV 149


>Medtr2g012780.1 | transmembrane protein, putative | HC |
           chr2:3286347-3283002 | 20130731
          Length = 171

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 103/158 (65%), Gaps = 17/158 (10%)

Query: 11  NGWPPTGAPLNLQRDEH--------WSSFDSSVN-----AVSFGFVATAILISMFLVMAI 57
           NGW P GAPLN+QRD+H        WS+ +S+       AVSFGFVATA+LISMFL+MAI
Sbjct: 14  NGWSPIGAPLNVQRDDHQQQPQQQHWSNNNSNNFDSSVNAVSFGFVATAVLISMFLLMAI 73

Query: 58  FERFLXXXXXXXXXXXXXXXGDVESQMGFGGKLGY-PSPKMSVYDSGVSVLMPGDAIPTF 116
           FERFL                 VES +    KLG+  SPKM+++ S VSVLMPGD IPTF
Sbjct: 74  FERFLAPSSQALFPNLRRNRRAVESPIR---KLGHHQSPKMNIFTSWVSVLMPGDEIPTF 130

Query: 117 IAHPAPAPCCPERNSWPSHQQNTLPCSTSTTRPVSNEV 154
           IAHPAP PCCPER SWPSHQ  TL CSTS   P +N +
Sbjct: 131 IAHPAPIPCCPERISWPSHQHTTLSCSTSNVLPSNNNI 168


>Medtr2g005740.2 | transmembrane protein, putative | HC |
           chr2:293644-292533 | 20130731
          Length = 161

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 28  WSSFDSSVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXXXGDVESQMGFG 87
           W SF +S++A+SFGFVATAILISMFL+MAIFE                     E      
Sbjct: 45  WKSFGTSMSAISFGFVATAILISMFLIMAIFEHLFKPTQQFSSTPESMLPTYQEHHSLPT 104

Query: 88  GKLGYPSPKM-SVYDSGVSVLMPGDAIPTFIAHPAPAPCCPERNSWPSHQQN 138
            K G     + S Y   +SVLMPG   PT+IA PAP PC  E   WPSHQ +
Sbjct: 105 TKQGNAQSVLSSSYACDLSVLMPGQQYPTYIAQPAPLPCPREGAYWPSHQHH 156


>Medtr2g005740.1 | transmembrane protein, putative | HC |
           chr2:293284-292590 | 20130731
          Length = 151

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 28  WSSFDSSVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXXXGDVESQMGFG 87
           W SF +S++A+SFGFVATAILISMFL+MAIFE                     E      
Sbjct: 35  WKSFGTSMSAISFGFVATAILISMFLIMAIFEHLFKPTQQFSSTPESMLPTYQEHHSLPT 94

Query: 88  GKLGYPSPKM-SVYDSGVSVLMPGDAIPTFIAHPAPAPCCPERNSWPSHQQN 138
            K G     + S Y   +SVLMPG   PT+IA PAP PC  E   WPSHQ +
Sbjct: 95  TKQGNAQSVLSSSYACDLSVLMPGQQYPTYIAQPAPLPCPREGAYWPSHQHH 146