Miyakogusa Predicted Gene

Lj4g3v0450050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450050.1 Non Characterized Hit- tr|I3S1K1|I3S1K1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.34,0,N-terminal domain of the delta subunit of the F1F0-ATP
synthase,F1F0 ATP synthase OSCP/delta subunit,CUFF.47323.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g028730.1 | F0F1-type ATP synthase, delta subunit | HC | c...   317   5e-87

>Medtr3g028730.1 | F0F1-type ATP synthase, delta subunit | HC |
           chr3:9221245-9227170 | 20130731
          Length = 244

 Score =  317 bits (813), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 163/243 (67%), Positives = 189/243 (77%), Gaps = 7/243 (2%)

Query: 3   ALCNRVRSGIALSNKLGFLTSHRSS---TLVAPL---ASRNYSTHVPGQKDTKIKVPLAM 56
           AL  RV+SGI+L NKLG L+S RS+   +L+AP    A+RNY+  VPG ++ KIKVP+AM
Sbjct: 2   ALYGRVKSGISLCNKLGLLSSQRSTLQRSLIAPAISQATRNYA-DVPGAREAKIKVPIAM 60

Query: 57  FGGSGNYASALYIXXXXXXXXXXXDSELHQFVEAVKNSSLVSQFVKDISVAKDVRVKAIE 116
           FGGSGNYASALYI           DSEL QFVE VK S + SQF+KDISV KDVR+K IE
Sbjct: 61  FGGSGNYASALYIAAVKANAVEKVDSELLQFVEMVKGSKITSQFIKDISVKKDVRLKTIE 120

Query: 117 EISREAKFAEVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFXXXXXX 176
           +I+ +AKF+E TKNFL ++A NGRLK+++ IAKRF ELAMAYKGEVKA VTTVF      
Sbjct: 121 DIASKAKFSETTKNFLALLAVNGRLKHVELIAKRFAELAMAYKGEVKAIVTTVFPLPAEE 180

Query: 177 XXXXXXTVQEIIGSGAKVSLEQKIDPSILGGLVLEFSQKVFDMSIRTRAQQMERILREPI 236
                 TVQE++GSGAKV LEQKIDPSILGG+VLEFSQKVFDMSIRTRAQQMERILREPI
Sbjct: 181 ENALKQTVQEMLGSGAKVKLEQKIDPSILGGIVLEFSQKVFDMSIRTRAQQMERILREPI 240

Query: 237 NIS 239
           NIS
Sbjct: 241 NIS 243