Miyakogusa Predicted Gene

Lj4g3v0446740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0446740.1 tr|G7JRS3|G7JRS3_MEDTR Vacuolar protein
sorting-associated protein-like protein OS=Medicago
truncatu,91.18,0,VACUOLAR PROTEIN SORTING 28, ISOFORM 2
(VPS28),Vacuolar protein sorting-associated, VPS28;
Endosomal,CUFF.47179.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g090890.1 | vacuolar protein sorting-associated protein VP...   313   4e-86

>Medtr4g090890.1 | vacuolar protein sorting-associated protein
           VPS28, putative | HC | chr4:35950016-35952082 | 20130731
          Length = 210

 Score =  313 bits (803), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 153/170 (90%)

Query: 6   EVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLSS 65
           EVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISP+EYE+ECQKLIAHFKTL+S
Sbjct: 3   EVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPKEYEIECQKLIAHFKTLAS 62

Query: 66  TLRDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRXXXXXXXXXXXXXVAECVQNF 125
           TL+DTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHR             VAECVQNF
Sbjct: 63  TLKDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRATAAAGVSTSAATVAECVQNF 122

Query: 126 ITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILPPDFEGKTKRKEWIAR 175
           ITSMDSLKLNM+AVDQVHPLLSDLY SLNKLTILPPDFEGK K K+WI R
Sbjct: 123 ITSMDSLKLNMVAVDQVHPLLSDLYGSLNKLTILPPDFEGKIKMKDWIGR 172