Miyakogusa Predicted Gene

Lj4g3v0445610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0445610.1 tr|E3SER8|E3SER8_ELAGV F-box protein OS=Elaeis
guineensis var. tenera GN=FB1 PE=2 SV=1,43.06,5e-18,FBOX,F-box domain,
cyclin-like,CUFF.47162.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g091100.1 | F-box SKIP27-like protein | HC | chr4:36063639...   181   2e-46
Medtr2g011800.1 | F-box protein | HC | chr2:2951690-2951098 | 20...    92   2e-19
Medtr8g075190.1 | F-box protein | HC | chr8:31780833-31783471 | ...    70   7e-13

>Medtr4g091100.1 | F-box SKIP27-like protein | HC |
           chr4:36063639-36065048 | 20130731
          Length = 161

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 115/155 (74%), Gaps = 7/155 (4%)

Query: 1   MALGFEGYSFARTLSMGRKRVVVTNN---VENDSVMTPLKRVCSGRINFNSERSRLEALP 57
           M LGF+ YS+ R L  GRKRVVV+NN    E++ V  PLKR+CSGR +  SE+SRLEALP
Sbjct: 10  MTLGFDTYSYGRAL--GRKRVVVSNNDEAFESNPVTVPLKRMCSGRFDTISEKSRLEALP 67

Query: 58  LDVLIRVLCGVDHEDLEQLLHVSKTIREATEIARDFHFEYSTPKKKTFGFRSPFDIEDAN 117
            D+L+RVLCGVDH+DLEQL +VS TI+EA EIA+  HFE+STPKK +   RSPFDIE+  
Sbjct: 68  QDLLVRVLCGVDHDDLEQLFNVSTTIKEAGEIAKQMHFEFSTPKKSSVAVRSPFDIENGF 127

Query: 118 EFEEIEAPKAPL-RKSVKSRLSGKNLGGISVALFG 151
           + +EIEAP APL  K  K RLS   L GISV+LF 
Sbjct: 128 D-DEIEAPNAPLMSKKSKPRLSANKLAGISVSLFA 161


>Medtr2g011800.1 | F-box protein | HC | chr2:2951690-2951098 |
           20130731
          Length = 120

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 37/141 (26%)

Query: 10  FARTLSMGRKRVVVTNNVENDSVMTPLKRVCSGRINFNSERSRLEALPLDVLIRVLCGVD 69
           FAR  S+GRKRVVV+       + +PL                 E LP D+L+ VLCGVD
Sbjct: 5   FAR--SIGRKRVVVSE------IGSPL-----------------ETLPQDILLHVLCGVD 39

Query: 70  HEDLEQLLHVSKTIREATEIARDFHFEYSTPKKKTFGFRSPFDIEDANEFEEIEAPKAPL 129
           H+DL+QL HVSK IREAT I  + HF++STPKK      +P    D       E PKAP+
Sbjct: 40  HDDLKQLFHVSKIIREATLIVEESHFKFSTPKK-----NNPIGSND-------ETPKAPM 87

Query: 130 RKSVKSRLSGKNLGGISVALF 150
           +K  +S+     L  IS+ LF
Sbjct: 88  KKPKESKFYSDELRDISLVLF 108


>Medtr8g075190.1 | F-box protein | HC | chr8:31780833-31783471 |
           20130731
          Length = 264

 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 17/136 (12%)

Query: 28  ENDSVMTPLKRVCSGRINFNSERSRLEALPLDVLIRVLCGVDHEDLEQLLHVSKTIREAT 87
           ++ SV TP     + RI+     SRLE+LP+D+L+++LC + H+ L  + HVS+ IR+A 
Sbjct: 88  QSSSVGTPK----TPRIDECQSESRLESLPIDLLVKILCCLHHDQLRAVFHVSQRIRKAV 143

Query: 88  EIARDFHFEYSTPKKKTFGFRS----------PFDIEDAN--EFEEIEAPKAPLR-KSVK 134
            +AR FHF Y+TP +      S          PF   D           PKAP       
Sbjct: 144 IVARQFHFNYTTPDRSRLEMLSTMTPRPSEHWPFLWGDGKGLRIPSPHTPKAPRHGPRPP 203

Query: 135 SRLSGKNLGGISVALF 150
           SRL    +  ++  LF
Sbjct: 204 SRLKVSEMRQVTAVLF 219