Miyakogusa Predicted Gene

Lj4g3v0445370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0445370.1 Non Characterized Hit- tr|D8RW05|D8RW05_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,43.9,1e-18,coiled-coil,NULL; seg,NULL,CUFF.47137.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099850.1 | Sas10/Utp3/C1D family protein | HC | chr3:4581...   206   1e-53

>Medtr3g099850.1 | Sas10/Utp3/C1D family protein | HC |
           chr3:45816305-45813153 | 20130731
          Length = 320

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 129/151 (85%), Gaps = 3/151 (1%)

Query: 1   MLVSREDLTPQD---GHDAYRPVKFAPTSMDQDKTSKQERNALRREKEILKESKHSSFIR 57
           MLVS+ + T +D   G + YRP KFAPTSMD +K+SKQERNA RR+KEILK++K S FIR
Sbjct: 153 MLVSKVEPTAEDDGDGDNVYRPPKFAPTSMDLEKSSKQERNASRRDKEILKQAKQSDFIR 212

Query: 58  TLMNDIEEKPEEIRDHEGSSKEVERHIAKMEERARQEEELFNRVPLTKHERKREKYLKKS 117
           +++ND+E++PEEIRD EG+S+EV+++I+KME+RARQEEELFNRVPL++ ERKREK++KK+
Sbjct: 213 SMVNDMEDRPEEIRDFEGTSREVDKYISKMEDRARQEEELFNRVPLSREERKREKHMKKA 272

Query: 118 RNGLDGLTESFFDEIKTLPFEDETGEQVMGS 148
            NG+ GLTES FDE++ LPFED T EQ MGS
Sbjct: 273 TNGMQGLTESLFDEVRALPFEDYTREQTMGS 303