Miyakogusa Predicted Gene

Lj4g3v0445340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0445340.1 Non Characterized Hit- tr|B9SIE8|B9SIE8_RICCO
Structural molecule, putative OS=Ricinus communis
GN=R,79.41,0.00000009,Motile_Sperm,Major sperm protein;
VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN,NULL; no
de,CUFF.47134.1
         (269 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g091470.1 | structural molecule protein | HC | chr4:362398...   397   e-111
Medtr2g081140.1 | vesicle-associated-like protein | HC | chr2:34...   299   2e-81
Medtr2g089995.1 | vesicle-associated-like protein | HC | chr2:38...   295   3e-80
Medtr2g089995.2 | vesicle-associated-like protein | HC | chr2:38...   220   1e-57
Medtr5g012420.1 | VAMP-associated protein | HC | chr5:3721097-37...    58   9e-09
Medtr4g027050.1 | VAMP-associated protein | HC | chr4:9310428-93...    56   4e-08
Medtr4g101020.1 | VAMP-associated protein | HC | chr4:41712222-4...    54   2e-07

>Medtr4g091470.1 | structural molecule protein | HC |
           chr4:36239894-36236005 | 20130731
          Length = 266

 Score =  397 bits (1019), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/269 (76%), Positives = 213/269 (79%), Gaps = 3/269 (1%)

Query: 1   MAVAEPKPHSEPKVWNLFKLPFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEXX 60
           MAVAEPK HSEPKVWN FKLPFR                                     
Sbjct: 1   MAVAEPKLHSEPKVWNFFKLPFRNSNTSSTNTTSSSVNNNLHHHHHHNPNSNTPLEGSTS 60

Query: 61  XXXXXXXXXXXXXXXLLPTRRRLKLDPSSKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQ 120
                          LLPTRRRLKLDPS+KLYFPYEPGKQVRSAIRIKNTSKS+VAFKFQ
Sbjct: 61  HTSNSVSSVARS---LLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQ 117

Query: 121 TTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKPEKTGLKFKIMSLKVKGAMDYV 180
           TTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKPEK+GLKFKIMSLKVKG++DYV
Sbjct: 118 TTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKPEKSGLKFKIMSLKVKGSIDYV 177

Query: 181 PELFDEQKDQVAVEQILRVIFLDPERPSPALEKLKRQLADADAALEARKKPAEDAGPKII 240
           PELFDEQKDQVAVEQILRV+FLDPERPSP LEKLKRQLADADAALE RKKPAEDAGPKII
Sbjct: 178 PELFDEQKDQVAVEQILRVVFLDPERPSPILEKLKRQLADADAALEERKKPAEDAGPKII 237

Query: 241 GEGLVIDEWKERRERYLAKQQGEVVVDSV 269
           GEGLVIDEWKERRERYLAKQQG+VVVDSV
Sbjct: 238 GEGLVIDEWKERRERYLAKQQGDVVVDSV 266


>Medtr2g081140.1 | vesicle-associated-like protein | HC |
           chr2:34022034-34018249 | 20130731
          Length = 243

 Score =  299 bits (766), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/186 (78%), Positives = 166/186 (89%), Gaps = 3/186 (1%)

Query: 86  DPSSKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIAT 145
           DPS+ LYFPYEPGKQVRSA+R+KNTSKSHVAFKFQTTAPKSC+MRPPG ILAPGES+IA 
Sbjct: 59  DPSNHLYFPYEPGKQVRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESVIAA 118

Query: 146 VFKFVEQPENNEK--PEKTGLKFKIMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLD 203
           VFKFVEQPENNEK   +K  +KFKIMSLKVK  +DYVPELFDEQ+D V VE+IL V+FLD
Sbjct: 119 VFKFVEQPENNEKLSNQKNKVKFKIMSLKVKLGVDYVPELFDEQRDLVTVERILGVVFLD 178

Query: 204 PERPSPALEKLKRQLADADAALEARKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGE 263
           PERPSPALEKLKRQLA+ADAA+EARKKPA + GP++  EGLVIDEWKERRE+YLA+QQ +
Sbjct: 179 PERPSPALEKLKRQLAEADAAVEARKKPAAETGPRVAAEGLVIDEWKERREKYLARQQVQ 238

Query: 264 VVVDSV 269
             VD+V
Sbjct: 239 -AVDTV 243


>Medtr2g089995.1 | vesicle-associated-like protein | HC |
           chr2:38075290-38079012 | 20130731
          Length = 271

 Score =  295 bits (755), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/187 (83%), Positives = 172/187 (91%), Gaps = 3/187 (1%)

Query: 86  DPSSKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIAT 145
           DP +KLYFPYEPGKQVRSAI IKNT KSHVAFKFQTTAPKSC+MRPPG ILAPGESIIAT
Sbjct: 85  DPPNKLYFPYEPGKQVRSAITIKNTCKSHVAFKFQTTAPKSCYMRPPGGILAPGESIIAT 144

Query: 146 VFKFVEQPENNEKP--EKTGLKFKIMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLD 203
           VFKFVE PENNEKP  +K+ +KFKIMSLKV+G MDYVPELFDEQ+DQVAVEQILRV+FLD
Sbjct: 145 VFKFVEPPENNEKPTDQKSRVKFKIMSLKVQGEMDYVPELFDEQRDQVAVEQILRVVFLD 204

Query: 204 PERPSPALEKLKRQLADADAALEARKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGE 263
           P+R SPA++KLKRQLA+A+AALEARKKP E+ GP++ GEGLVIDEWKERRERYLAKQQ E
Sbjct: 205 PDRNSPAMDKLKRQLAEAEAALEARKKPPEETGPRVAGEGLVIDEWKERRERYLAKQQVE 264

Query: 264 -VVVDSV 269
            VVVDSV
Sbjct: 265 GVVVDSV 271


>Medtr2g089995.2 | vesicle-associated-like protein | HC |
           chr2:38075290-38079012 | 20130731
          Length = 230

 Score =  220 bits (560), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/127 (84%), Positives = 116/127 (91%), Gaps = 2/127 (1%)

Query: 86  DPSSKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIAT 145
           DP +KLYFPYEPGKQVRSAI IKNT KSHVAFKFQTTAPKSC+MRPPG ILAPGESIIAT
Sbjct: 85  DPPNKLYFPYEPGKQVRSAITIKNTCKSHVAFKFQTTAPKSCYMRPPGGILAPGESIIAT 144

Query: 146 VFKFVEQPENNEKP--EKTGLKFKIMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLD 203
           VFKFVE PENNEKP  +K+ +KFKIMSLKV+G MDYVPELFDEQ+DQVAVEQILRV+FLD
Sbjct: 145 VFKFVEPPENNEKPTDQKSRVKFKIMSLKVQGEMDYVPELFDEQRDQVAVEQILRVVFLD 204

Query: 204 PERPSPA 210
           P+R SP 
Sbjct: 205 PDRNSPV 211


>Medtr5g012420.1 | VAMP-associated protein | HC |
           chr5:3721097-3717329 | 20130731
          Length = 243

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 10/137 (7%)

Query: 76  LLPTRRRLKLDPSSKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAI 135
           ++ T   L ++P  +L F +E  KQ+  ++++ N + S+VAFK +TT P+   +RP   +
Sbjct: 2   MMSTGDLLNIEPV-ELKFLFELKKQISCSLQLSNKTDSYVAFKVKTTNPRKYCVRPNTGV 60

Query: 136 LAPGES--IIATVFKFVEQPENNEKPEKTGLKFKIMSLKVKGAMD---YVPELFDEQKDQ 190
           + P  +  +I T+    E P + +  +    KF + S++V    D     PE+F+++   
Sbjct: 61  VLPQSTCEVIVTMQAQKEVPPDMQCKD----KFLLQSVRVNDGADAKEITPEMFNKEAGH 116

Query: 191 VAVEQILRVIFLDPERP 207
           V  E  LRV+++ P +P
Sbjct: 117 VVEECKLRVVYVAPPQP 133


>Medtr4g027050.1 | VAMP-associated protein | HC |
           chr4:9310428-9306771 | 20130731
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 5/133 (3%)

Query: 83  LKLDPSSKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGES- 141
           L++ P  +L FP+E  KQ+  ++++ N S +++AFK +TT PK   +RP   ++ P  + 
Sbjct: 7   LQIHPQ-ELQFPFELRKQISCSLQLSNKSDNYIAFKVKTTNPKKYCVRPNNGVVLPRSTC 65

Query: 142 -IIATVFKFVEQPENNEKPEKTGLKFKIMSLKVKGAMDYVPELFDEQKDQVAVEQILRVI 200
            I  T+    E P + +  +K  L+  + S     A D  PE+F+++      E  LRV+
Sbjct: 66  DITVTMQGQKEAPPDMQCKDKFLLQSVVASPGAT-AKDITPEMFNKESGYEVDECKLRVV 124

Query: 201 FLDPER-PSPALE 212
           ++ P + PSP  E
Sbjct: 125 YVAPPQPPSPVRE 137


>Medtr4g101020.1 | VAMP-associated protein | HC |
           chr4:41712222-41717671 | 20130731
          Length = 242

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 9/117 (7%)

Query: 90  KLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGES--IIATVF 147
           +L FP+E  KQ+  ++++ N + S+VAFK +TT P+   +RP   I+ P  +  ++ T+ 
Sbjct: 14  ELKFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPRKYCVRPNTGIVLPRSTCDVMVTMQ 73

Query: 148 KFVEQPENNEKPEKTGLKFKIMSLKVKGAM---DYVPELFDEQKDQVAVEQILRVIF 201
              E P + +  +    KF + S+K    +   D   E+F+++   V  E  LRV++
Sbjct: 74  AQKEAPADMQCKD----KFLLQSVKTNDGVSPKDISAEMFNKEAGHVVEECKLRVVY 126