Miyakogusa Predicted Gene

Lj4g3v0423110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0423110.1 tr|A9T954|A9T954_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_168735,53.21,2e-17,seg,NULL,CUFF.47119.1
         (633 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g092050.1 | eukaryotic translation initiation factor-like ...   755   0.0  

>Medtr4g092050.1 | eukaryotic translation initiation factor-like
           protein | HC | chr4:36538559-36532956 | 20130731
          Length = 613

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/644 (68%), Positives = 478/644 (74%), Gaps = 42/644 (6%)

Query: 1   MSKKKVSGNTMTLKDFHGGSIPSDLPLPSAPGVTVRTSDRSGFDRPSSWGAPMGRPDHWS 60
           MSKKKVSG+TMTLKDFHGGSIPSDLPLPSAPGVTVR SDR G+DRP++WG PMGRPDHWS
Sbjct: 1   MSKKKVSGSTMTLKDFHGGSIPSDLPLPSAPGVTVRPSDRVGYDRPATWGNPMGRPDHWS 60

Query: 61  RPHTSPATRHYDDKTPFLSHTAPIGRNFDEDERKPLDGGSAPRRTVSDESTRAPPPSRVE 120
           RPHTSPATRHYDDK+ FL HTAPIGRNFDEDERKPLDG SAPRRT+SDES RAP PS VE
Sbjct: 61  RPHTSPATRHYDDKSLFLPHTAPIGRNFDEDERKPLDGSSAPRRTISDESIRAPLPSCVE 120

Query: 121 VKPEYGLGGSSLGRQV-APVSPAAVGTVNSYSARLTEAVHTGMNTHSLGGSKERXXXXXX 179
           VK       SSL RQV APVSP     VNSYSARLTEA H G N+ SLG S         
Sbjct: 121 VK-----RSSSLSRQVAAPVSPV---NVNSYSARLTEATHVGNNSQSLGVSSG------- 165

Query: 180 XXXXXXXYPNVWSMRKEVANAVEAEQSARSGANAVSKLAHASALEKVSSGRWQSKAAHYQ 239
                  +PNVWSMRKEVA+A+E EQSA + ANAVSKLAHASAL+KVSSGRWQ+   HYQ
Sbjct: 166 ----GGGHPNVWSMRKEVASAIELEQSAWASANAVSKLAHASALDKVSSGRWQT--VHYQ 219

Query: 240 NDAELVRSPEAESRQXXXXXXXXXXXXMDAVGEKEYYDAMLARQAERGLGIDNQMQ-GGR 298
            + E VR  + E R             +D V EKE+ D MLAR AERGL IDNQMQ GGR
Sbjct: 220 TEVEAVRPTKVEGR----PHAYINSNRIDTVFEKEHSDEMLARHAERGLVIDNQMQGGGR 275

Query: 299 NELLDYEKSGVSKYPEVRPRSVPYQSDGVQPARNVGKLVGSELKNPVPSEPTEXXXXXXX 358
           NELL++E+SGV KY +VRPRSV   SDGVQPAR  GK VGSE ++PV SEP E       
Sbjct: 276 NELLEHERSGVHKYSDVRPRSVAQFSDGVQPARTDGKAVGSESQHPVASEPIERPKLKLL 335

Query: 359 XXXXXXESSEPSVTEYPQGYRLGNDSSHVETAHQAHGHANFVKPVSAGTESGKELGQRPK 418
                 ESSEPSV E  QGYR  NDS  VET  Q HGHANFVK VS GTES K+ GQRPK
Sbjct: 336 PRTKPLESSEPSVIEPTQGYRQVNDSVPVETVPQRHGHANFVKSVSVGTESPKDPGQRPK 395

Query: 419 LN---LKPRSQPLEKLEVNTETGRNALFGGGRPRELVLKERGVDDVAINTYDVVENSNRV 475
           LN   LKPR +  E+ E + E  RNALFGG RPRELVLKERGVDDVAI  YDVV NSNRV
Sbjct: 396 LNLKPLKPRPEVHEQSEASKERDRNALFGGARPRELVLKERGVDDVAIKNYDVVGNSNRV 455

Query: 476 EPNILKAEKLPDPSIQSRHGEKANDAPLDQRTGRKPERKEQRVDGERGHSQKRNWRGGD- 534
           E N  ++EK  D SIQ+R+ EK  D  L+QR GRKPERKEQ+VDG+R   Q++NWR GD 
Sbjct: 456 EQNTPRSEKHDDHSIQTRYVEKTEDG-LNQRAGRKPERKEQKVDGDRAPGQRKNWRSGDN 514

Query: 535 ----NRRNARETERQQPAPERPASPETWRKPVEQPKPSQGVGGPRNGRAASAVELAQAFS 590
               NRRN RET+RQQ  PER  SPETWRKPVE    SQG GGPR GRAASAVELAQAFS
Sbjct: 515 NSNNNRRNPRETDRQQ-VPERQPSPETWRKPVES---SQGAGGPRYGRAASAVELAQAFS 570

Query: 591 RSVSDPKV-NDRFSGQNGLNTGRTQQMPFSRLVGPTPRPQINGY 633
           +SVSDPKV NDRFSGQ GLNTGRT Q+PFSRLVGPT RPQINGY
Sbjct: 571 KSVSDPKVNNDRFSGQRGLNTGRT-QVPFSRLVGPTSRPQINGY 613