Miyakogusa Predicted Gene

Lj4g3v0412640.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0412640.3 tr|B9IP66|B9IP66_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_573662 PE=4
SV=1,62.82,3e-19,SQUALENE MONOOXYGENASE,NULL; SE,Squalene
epoxidase,CUFF.48671.3
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g017270.1 | squalene monooxygenase | HC | chr1:4770122-476...   169   4e-43
Medtr4g092640.1 | squalene monooxygenase | HC | chr4:36749132-36...   167   1e-42
Medtr3g103510.2 | squalene epoxidase | HC | chr3:47787960-477933...   160   2e-40
Medtr3g103510.1 | squalene epoxidase | HC | chr3:47787960-477933...   160   2e-40
Medtr6g034955.1 | squalene monooxygenase | HC | chr6:12253385-12...   138   9e-34
Medtr6g035065.1 | squalene epoxidase | HC | chr6:12399939-124116...   119   6e-28
Medtr1g017270.2 | squalene monooxygenase | HC | chr1:4770017-476...   113   4e-26
Medtr5g030880.1 | squalene epoxidase | LC | chr5:13206513-132083...    83   5e-17
Medtr7g064210.1 | GDP-fucose protein O-fucosyltransferase | LC |...    80   3e-16
Medtr2g022940.1 | squalene epoxidase | HC | chr2:7986164-7984237...    63   7e-11

>Medtr1g017270.1 | squalene monooxygenase | HC |
           chr1:4770122-4765355 | 20130731
          Length = 526

 Score =  169 bits (429), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 93/102 (91%)

Query: 2   KELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRI 61
           KE++QA  DYLSLG +FSEG  SLLSGLNPRPLS+VLHFFAVA++GVGRLL PFPSPKR+
Sbjct: 423 KEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRV 482

Query: 62  WIGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPPVH 103
           WIGARL+SGA+ I+ PIIKAEG+RQMFFPATVPAYYR PPV+
Sbjct: 483 WIGARLLSGASGIILPIIKAEGIRQMFFPATVPAYYRAPPVN 524


>Medtr4g092640.1 | squalene monooxygenase | HC |
           chr4:36749132-36744844 | 20130731
          Length = 525

 Score =  167 bits (424), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 93/101 (92%)

Query: 3   ELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIW 62
           E+++A  DYLSLG V S+G  +LLSGLNPRPLS+VLHFFAVA++GVGRLL PFPSPKR+W
Sbjct: 425 EMRRACFDYLSLGGVCSDGPIALLSGLNPRPLSLVLHFFAVAVFGVGRLLIPFPSPKRMW 484

Query: 63  IGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPPVH 103
           IGARLISGA+ I+FPIIKAEG+RQMFFPA+VPAYYRMPPVH
Sbjct: 485 IGARLISGASGIIFPIIKAEGVRQMFFPASVPAYYRMPPVH 525


>Medtr3g103510.2 | squalene epoxidase | HC | chr3:47787960-47793388
           | 20130731
          Length = 365

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 88/100 (88%)

Query: 2   KELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRI 61
           KE++QA  DYLSLG +FSEG  SLLSGLNP PLS+VLHFFAVAIYGVGRLL PFPSPKR+
Sbjct: 264 KEMRQACFDYLSLGGLFSEGPVSLLSGLNPCPLSLVLHFFAVAIYGVGRLLLPFPSPKRL 323

Query: 62  WIGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPP 101
           WIG RLI+ A+ I+ PIIKAEG+RQMFFPATVPAYYR PP
Sbjct: 324 WIGIRLIASASGIILPIIKAEGIRQMFFPATVPAYYRAPP 363


>Medtr3g103510.1 | squalene epoxidase | HC | chr3:47787960-47793388
           | 20130731
          Length = 519

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 88/100 (88%)

Query: 2   KELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRI 61
           KE++QA  DYLSLG +FSEG  SLLSGLNP PLS+VLHFFAVAIYGVGRLL PFPSPKR+
Sbjct: 418 KEMRQACFDYLSLGGLFSEGPVSLLSGLNPCPLSLVLHFFAVAIYGVGRLLLPFPSPKRL 477

Query: 62  WIGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPP 101
           WIG RLI+ A+ I+ PIIKAEG+RQMFFPATVPAYYR PP
Sbjct: 478 WIGIRLIASASGIILPIIKAEGIRQMFFPATVPAYYRAPP 517


>Medtr6g034955.1 | squalene monooxygenase | HC |
           chr6:12253385-12243348 | 20130731
          Length = 527

 Score =  138 bits (348), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 81/102 (79%)

Query: 2   KELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRI 61
           KE+++A  DYLSLG  FS+G  +LL+GLN RPLS++ HF  VA YG+ RL+ PFPSPKRI
Sbjct: 426 KEMREACFDYLSLGGDFSDGPIALLAGLNSRPLSLLYHFIGVATYGLVRLMMPFPSPKRI 485

Query: 62  WIGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPPVH 103
           W+GAR I  A  I+FPIIKAEG+RQMFFPATVP  YRMP +H
Sbjct: 486 WLGARFIFVALGIIFPIIKAEGIRQMFFPATVPMCYRMPHIH 527


>Medtr6g035065.1 | squalene epoxidase | HC | chr6:12399939-12411656
           | 20130731
          Length = 528

 Score =  119 bits (298), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 75/99 (75%)

Query: 2   KELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRI 61
           KE+++A  +YLSLG VFS+   +LL+GLN    +++ HF AVA YGVGRL+ PFPSPKRI
Sbjct: 426 KEMREACFNYLSLGGVFSDEPIALLAGLNSSSSTLLYHFIAVAAYGVGRLMMPFPSPKRI 485

Query: 62  WIGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMP 100
           WI ARL+S A  I+FPIIKAEG+ QM FP+TVPA    P
Sbjct: 486 WIAARLLSVALGIIFPIIKAEGIWQMLFPSTVPALLCTP 524


>Medtr1g017270.2 | squalene monooxygenase | HC |
           chr1:4770017-4765479 | 20130731
          Length = 513

 Score =  113 bits (282), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 65/74 (87%)

Query: 2   KELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRI 61
           KE++QA  DYLSLG +FSEG  SLLSGLNPRPLS+VLHFFAVA++GVGRLL PFPSPKR+
Sbjct: 423 KEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRV 482

Query: 62  WIGARLISGAACIL 75
           WIGARL+S +  +L
Sbjct: 483 WIGARLLSVSIIVL 496


>Medtr5g030880.1 | squalene epoxidase | LC | chr5:13206513-13208398
           | 20130731
          Length = 286

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 3   ELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIW 62
           E+ +A  +YLSLG V S G  +LLS LNPRPLS+VLHFF VA+YGVGRLL PFPSPKR++
Sbjct: 212 EMHRACFNYLSLGGVCSYGPIALLSSLNPRPLSLVLHFFVVAVYGVGRLLIPFPSPKRMY 271


>Medtr7g064210.1 | GDP-fucose protein O-fucosyltransferase | LC |
           chr7:23482736-23477844 | 20130731
          Length = 415

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 3   ELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPK 59
           E+     DYLSLG V S+G  +LLSGLN RPLS+VLHFFA+A+YGVGRLL PFPSPK
Sbjct: 359 EMHPTCFDYLSLGGVCSDGPIALLSGLNSRPLSLVLHFFALAVYGVGRLLIPFPSPK 415


>Medtr2g022940.1 | squalene epoxidase | HC | chr2:7986164-7984237 |
           20130731
          Length = 256

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 3   ELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIY 46
           E+ +A  DYLSLG V S+G  +LLSGLNPRPLS+VLHFFAVA+Y
Sbjct: 194 EMLRACFDYLSLGGVCSDGPIALLSGLNPRPLSLVLHFFAVAVY 237