Miyakogusa Predicted Gene
- Lj4g3v0385920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0385920.1 tr|D7KHT7|D7KHT7_ARALL KH domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,26.57,2e-18,Eukaryotic type KH-domain (KH-domain type
I),NULL; KH_TYPE_1,K Homology domain, type 1; K homology
R,CUFF.47034.1
(584 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 654 0.0
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 447 e-125
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 263 5e-70
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 181 1e-45
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 164 3e-40
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 164 3e-40
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 156 6e-38
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 137 3e-32
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 137 3e-32
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 137 3e-32
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 137 3e-32
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 135 1e-31
Medtr5g049770.1 | RNA-binding KH domain protein | HC | chr5:2176... 118 1e-26
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 117 3e-26
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 117 3e-26
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 116 5e-26
Medtr7g006750.1 | pectinacetylesterase family protein | LC | chr... 114 3e-25
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 105 1e-22
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 94 4e-19
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 94 4e-19
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 89 8e-18
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 89 1e-17
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 89 1e-17
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 89 1e-17
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 89 1e-17
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 79 1e-14
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 75 2e-13
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 72 1e-12
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 71 3e-12
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 71 3e-12
Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-3153788... 62 2e-09
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 60 9e-09
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803... 59 1e-08
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804... 57 4e-08
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 55 2e-07
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 55 2e-07
Medtr5g031580.1 | RNA-binding KH domain protein, putative | HC |... 52 2e-06
Medtr5g031530.1 | RNA-binding KH domain protein | HC | chr5:1353... 51 4e-06
Medtr5g031500.1 | hypothetical protein | LC | chr5:13518708-1351... 50 8e-06
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/599 (58%), Positives = 418/599 (69%), Gaps = 32/599 (5%)
Query: 16 QVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGG-- 73
V FRLLCHASR+G+ IGK+G VIKSLQQ T ARIRIDDAP D P+RVI +I L+G
Sbjct: 19 HVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDGD 78
Query: 74 ------EALLRVFEKVLDVAA-EADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXIR 126
EALL+VFE++LDVAA E+D V DRVV CRLL + Q IR
Sbjct: 79 VSLNPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAKIR 138
Query: 127 AETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTTASR 186
A+TGC+IRV +DKLPA TKPSDEIIEIQG R+++C P DRTK +R
Sbjct: 139 ADTGCRIRVLNDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQDCPPLDRTKMMGTR 198
Query: 187 PYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVSALD 246
PYE FQ+ T VP E TD ++D R Q+SS + S R NG + LS E NRVS+LD
Sbjct: 199 PYEAFQNETSAVPHEGLTDLNMDFRLQRSSAISTSSIRSNGVPSKSHPLSVEDNRVSSLD 258
Query: 247 PRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITAL 306
P AL++EVTFRILCS DR+GAV+GKGGS ++ALQNETGANIS+ PPVVECEDRLITITAL
Sbjct: 259 PEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVECEDRLITITAL 318
Query: 307 ENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGG 366
ENPESR+ SPAQ+AVVLVF RS+E ++ VD+ S KESSVTA+LV+ SNQVG L+GKGG
Sbjct: 319 ENPESRF-SPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGG 377
Query: 367 AIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVS 426
AIVSEMRKAT T IR+ N + PKC + NDQ+VQISG+ NV+DALYNAT RLRD++F+
Sbjct: 378 AIVSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLI 437
Query: 427 TQNNGGX--------------------XXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSW 466
QN+GG MDHL+LS+NS +S W
Sbjct: 438 AQNSGGTGPYRRPRDSIPLGLGGQSVVGSNHGPSIHSLSQSMDHLTLSRNSGRSASSGVW 497
Query: 467 TPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDS 526
PK G NSR ++D GR L P+ GDLEL SGS T ++ AI+TNTTVEIM+ NDII S
Sbjct: 498 APKVVGGKNSRYTDDAGRRLNPREGDLELASGSNT-VIGNAAIITNTTVEIMLPNDIIGS 556
Query: 527 VYGEDGGNLDRLKQISGAKVTVHEPLPGASTRA-IVISGTPDETQAAQSLLQAFILNGS 584
VYGE+G NLD+L+QISGAKV HEP PG S RA IV+SGTPDETQAAQSLLQA+ILNGS
Sbjct: 557 VYGENGSNLDQLRQISGAKVVFHEPRPGTSDRAKIVLSGTPDETQAAQSLLQAYILNGS 615
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/493 (50%), Positives = 310/493 (62%), Gaps = 62/493 (12%)
Query: 1 MADPTHF-NG------PSNGPTQ--------VTFRLLCHASRVGSLIGKAGVVIKSLQQA 45
+ DP F NG PS P Q V FRLLC++SR+G +IGK+G VIK+LQ
Sbjct: 17 LPDPNPFPNGSSKRAKPSKPPQQPLPIPAGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLT 76
Query: 46 TAARIRIDDAPPDSPDRVIRII--SKLDGG-------------------EALLRVFEKVL 84
T A+IRI+D+P +SPDRVI +I S +DG EALLRVF+++L
Sbjct: 77 TGAKIRIEDSPNESPDRVIMVIGASNIDGKVMVRSHSGDGEAIEVSKAQEALLRVFDRIL 136
Query: 85 DVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXIRAETGCKIRVFSDKLPAGT 144
+VAAE + ++ DR V CRL++D AQ I+ +TGCKI V D LPA
Sbjct: 137 EVAAEMEGIELGDRTVSCRLVADSAQAGSVIGKGGKVVEKIKKDTGCKIWVCKDNLPACI 196
Query: 145 KPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTTASRPYEGFQHG---------- 194
DE+IEI+G +++ DRTK T +E H
Sbjct: 197 SSPDEVIEIEGSVSSVKKALVAVSRNLQDRHHADRTKMTGQNSHEVIHHEALVGVPRETL 256
Query: 195 ------TF---------DVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEV 239
TF VP ET TD H+DH Q+ S L L S N A GV+SLSAEV
Sbjct: 257 MSVPRETFIGAPRETLTAVPCETLTDLHVDHLLQRRSALSILPSSSNSYATGVHSLSAEV 316
Query: 240 NRVSALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDR 299
NRVS+L+P+A Q+E+TF+I+CSNDR+G VIGKGG+ IRALQ+ETGA +S+ P V ECEDR
Sbjct: 317 NRVSSLEPKAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDR 376
Query: 300 LITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVG 359
LITITA E+PESRY SPAQKA VLVFSRSVEAG ++G+D G SSVTA+LV+ SNQVG
Sbjct: 377 LITITASESPESRY-SPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVG 435
Query: 360 CLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRL 419
CL+GKGG IVSEMRKATG IR++ ++ KC +DNDQ+VQISG+F NVQDALYNATGRL
Sbjct: 436 CLLGKGGVIVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRL 495
Query: 420 RDNLFVSTQNNGG 432
RDNLF T + G
Sbjct: 496 RDNLFGGTLKSAG 508
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 182/358 (50%), Gaps = 42/358 (11%)
Query: 254 VTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA--PPVVEC---EDRLITIT---- 304
VT +++ S+++VG ++GKGG + ++ TGA+I I V +C D+++ I+
Sbjct: 423 VTAQLVVSSNQVGCLLGKGGVIVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISGEFS 482
Query: 305 ----ALENPESRY---------PSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARL 351
AL N R S +++ V S + G R V GS+
Sbjct: 483 NVQDALYNATGRLRDNLFGGTLKSAGTRSLSSVQSDTSPYGRLRDVPLGSQSSLRADTNA 542
Query: 352 VIQSNQVGCLIGKGGAIVSEMRKATGTMIRV--IANNQFPKCTTDNDQLVQISGQFLNVQ 409
++ V L+G+ S ++ T +R+ ++ +D ++ L Q
Sbjct: 543 FVRLRDV-PLVGQ-----SSLQADTSPYVRLRDVSLGGQSSLQSDTSPYGRLRDIPLGGQ 596
Query: 410 DALYNAT---GRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSW 466
+L + T G+LRD + +DH SL +N + PSSP W
Sbjct: 597 SSLQSDTSPYGKLRD---IPLGGQSAVGISHSLSRHTFSQGIDHFSLGRNYDRPSSPGLW 653
Query: 467 TPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDS 526
TP +NS N+ G T + G LELVSGSK+AIV TNTT+EI+V D +
Sbjct: 654 TPPRVTGMNSGSINEASWGSTSRKGGLELVSGSKSAIV------TNTTIEIVVPEDTLYL 707
Query: 527 VYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVISGTPDETQAAQSLLQAFILNGS 584
VYGE+G NL RL+QISGAKV +HEP PG S R IV+SG+PDETQAAQSLLQAFILNGS
Sbjct: 708 VYGENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPDETQAAQSLLQAFILNGS 765
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 198/584 (33%), Positives = 291/584 (49%), Gaps = 46/584 (7%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKL--- 70
P Q+ FRL+CH+S VG LIG +G ++ L++ T +I +DA + DRVI +I +
Sbjct: 36 PGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDR 95
Query: 71 -------------DGGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXX 117
+ E ++RVF++V + +E + V +LL+ +Q
Sbjct: 96 KGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGG----NGEVYGKLLAHSSQVGAIVGK 151
Query: 118 XXXXXXXIRAETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPF 177
IR +G IRV P +E+I I G +++C P
Sbjct: 152 GGKNISNIRNNSGSNIRVC--PAPHCAAKDEELILITGESLAVKKALIYVSYCLQDCPPM 209
Query: 178 DRTKTTASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSA 237
K + + P T + + + H D +S LP + +A + +
Sbjct: 210 G--KVSLNTP------PTINSSDRSTSYTHEDLFPHLNSWLPSMEGLSINDA---SKQTT 258
Query: 238 EVNRVSALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECE 297
N S+LD + V FR+LCSN+ G+VIGK GS +R + TGA+I APP+ + E
Sbjct: 259 NANGNSSLDSKGSGHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASIVFAPPLGQYE 318
Query: 298 DRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQ 357
+R++TI+A EN ES SPAQ AV+LVF+R E G + ES VTARL+I ++
Sbjct: 319 ERIVTISAFENLESSN-SPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTST 377
Query: 358 VGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATG 417
+ L G G ++SE+R+ +G I+++ P +DND +VQI+G + V++AL T
Sbjct: 378 LHLLTGNEGQVISELRQVSGADIQLLHGEPIPNA-SDNDVVVQITGGYRCVENALRKITS 436
Query: 418 RLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWTPKSAGAINSR 477
+RDN T + S+ P + P++AG ++
Sbjct: 437 IIRDNPL--TNELLAEAKIKPSFPLNKDTVRSKFITRKKSSFPFA--RVPPQNAGVYQAK 492
Query: 478 GSNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDR 537
+ G T +E V + IV A VTNTTVEI+VS + SVYGEDGGNLDR
Sbjct: 493 KVTENGESHT---NLIENVEPGRGNIV---ATVTNTTVEIIVSEHVFGSVYGEDGGNLDR 546
Query: 538 LKQISGAKVTVHEPLP-GASTRAIVISGTPDETQAAQSLLQAFI 580
++QISGA VTV +P G S +VISGTPD+T AAQSLLQAFI
Sbjct: 547 IRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFI 590
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 138/326 (42%), Gaps = 43/326 (13%)
Query: 248 RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITA-- 305
+ L ++ FR++C + VG +IG GS + L+ ETG I VV +DR+I +
Sbjct: 33 KLLPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSM 92
Query: 306 -------LENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQV 358
L + E S AQ+ VV VF R G++ V +L+ S+QV
Sbjct: 93 SDRKGIVLGDREMEV-SNAQEGVVRVFDRV------WGLESEKGGNGEVYGKLLAHSSQV 145
Query: 359 GCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGR 418
G ++GKGG +S +R +G+ IRV P C +++L+ I+G+ L V+ AL +
Sbjct: 146 GAIVGKGGKNISNIRNNSGSNIRVCPA---PHCAAKDEELILITGESLAVKKALIYVSYC 202
Query: 419 LRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWTPKSAGAINSRG 478
L+D H L + N SW P G
Sbjct: 203 LQD---CPPMGKVSLNTPPTINSSDRSTSYTHEDLFPHLN------SWLPSMEGL----S 249
Query: 479 SNDVGRGLTPQNGDLELVS-GSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDR 537
ND + T NG+ L S GS A+V + ++ SN++ SV G+ G +
Sbjct: 250 INDASKQTTNANGNSSLDSKGSGHAVVFR----------LLCSNNVAGSVIGKKGSIVRT 299
Query: 538 LKQISGAKVTVHEPLPGASTRAIVIS 563
+ +GA + PL R + IS
Sbjct: 300 FEIRTGASIVFAPPLGQYEERIVTIS 325
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 204/420 (48%), Gaps = 54/420 (12%)
Query: 14 PTQ--VTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD 71
PTQ FR+LC A++ SL+ +G +I IDD D RI+ +
Sbjct: 13 PTQPDTVFRILCPAAKSDSLLSLSG---------DGVKILIDDFAGDVTSSDERIVVIIS 63
Query: 72 GGE-------ALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
AL+RVFE++++ + + V CRLL+ Q
Sbjct: 64 AAAEESAAQLALIRVFERIVEKDNNEENNKKSNSSVGCRLLAPSYQVGCVLGRGGKIVEK 123
Query: 125 IRAETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTTA 184
IR E+G ++R+ P DE I+I G + CL + +
Sbjct: 124 IRQESGAQVRILPKDHSPIPPPGDEFIQITGNFNAVKKALLA----VSSCLQDNVGNSGG 179
Query: 185 SRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVSA 244
+ G Q ++ Q+ PD SR G +S N A
Sbjct: 180 FKSSGGAQ---------------VEPYPQRGPHPPDHHSR------GYSSFPGSENARPA 218
Query: 245 LDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITIT 304
+++EV +++LC D+VG++IGKGGS +RALQNETGA+I I + ++R++ I+
Sbjct: 219 HR-MFVEEEVVYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVIS 277
Query: 305 ALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
ALEN + ++ SPAQ AV+ V R E GF+ ++V ARL+++S QVGCL+GK
Sbjct: 278 ALENSDQKH-SPAQDAVIRVHGRLTEIGFEH--------SNAVVARLLVRSPQVGCLLGK 328
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLF 424
GG ++SEMR+ TG IR+ + Q K + N+++VQ+ G +VQDAL++ T R+R+ +
Sbjct: 329 GGHVISEMRRVTGANIRIFSKEQI-KYISHNEEVVQVIGTLQSVQDALFHITSRIRETII 387
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 448 MDHLSLSQNSNHPSSPWSWTPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKT 507
MD + + P+SP S P++ N + D LT +NG+ + S
Sbjct: 474 MDRVPYPRGYEGPNSPRSRNPQAVNRGNPGATADT-FNLTSRNGNPGMTGNSLQN----- 527
Query: 508 AIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVISGTPD 567
N+ VEI + + + VYGE+ L++++QISGA V +H+P+PGA+ +++SGT D
Sbjct: 528 --PNNSPVEITIPHMYLIHVYGENNSTLNQIRQISGANVVIHDPIPGATEGLVIVSGTQD 585
Query: 568 ETQAAQSLLQAFILNG 583
+ +AQ L+Q FI G
Sbjct: 586 QIHSAQCLIQGFIFCG 601
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 50/330 (15%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
Q + FRILC + +++ G ++ L ++ +++ ++R++ I + E
Sbjct: 15 QPDTVFRILCPAAKSDSLLSLSGDGVKILIDDFAGDVT------SSDERIVVIISAAAEE 68
Query: 311 SRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVS 370
S AQ A++ VF R VE D + K SSV RL+ S QVGC++G+GG IV
Sbjct: 69 SA----AQLALIRVFERIVEK--DNNEENNKKSNSSVGCRLLAPSYQVGCVLGRGGKIVE 122
Query: 371 EMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNN 430
++R+ +G +R++ + P D+ +QI+G F V+ AL + L+DN+ N+
Sbjct: 123 KIRQESGAQVRILPKDHSP-IPPPGDEFIQITGNFNAVKKALLAVSSCLQDNV----GNS 177
Query: 431 GGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWTPKSAGAINSRGSNDVGRGLTPQN 490
GG H +H S +S P G+ N+R ++
Sbjct: 178 GGFKSSGGAQVEPYPQRGPH-----PPDHHSRGYSSFP---GSENARPAH---------- 219
Query: 491 GDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHE 550
+ + +++ D + S+ G+ G + L+ +GA + + +
Sbjct: 220 ---------------RMFVEEEVVYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVD 264
Query: 551 PLPGASTRAIVISGTPDETQAAQSLLQAFI 580
P + R +VIS + Q A I
Sbjct: 265 AGPDSDERVVVISALENSDQKHSPAQDAVI 294
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/673 (25%), Positives = 278/673 (41%), Gaps = 128/673 (19%)
Query: 4 PTHFNGPSNGPTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRV 63
P+ P + + V FRLLC AS++G +IGK G +I ++ T +++I++ P +RV
Sbjct: 19 PSGVFSPLDVSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERV 78
Query: 64 IRII-------------------------------------------------SKLDGGE 74
I + K++
Sbjct: 79 ITFLKESEEGSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNP 138
Query: 75 ALLRVFEKVLDVAAEADEFDVLDR-VVCCRLLSDPAQXXXXXXXXXXXXXXIRAETGCKI 133
++R V + AE + D + RLL Q + AE+G +I
Sbjct: 139 TIMRAVMLVFERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQI 198
Query: 134 RVF-SDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTK--TTASRPYEG 190
R+ +++PA SDE+++I G ++ E P D T + P
Sbjct: 199 RILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLPTNLTGP-SS 257
Query: 191 FQHGTFDVPTETCTDKHIDHRQQKSS-----TLPDLSSRYNGNAYGVNSLSAEVNRVSAL 245
+G F T + + + P + + G G E+
Sbjct: 258 HSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMRPPPEI------ 311
Query: 246 DPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITA 305
+TFR+LC ++ VG +IGKGGS I+ LQ ET + I + + ED +I I+
Sbjct: 312 --------LTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISG 363
Query: 306 LENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKG 365
+P+ R SP Q+A+ V +R A D KE S+ AR+++ S +GCL+GKG
Sbjct: 364 PAHPDDRI-SPVQEAIFRVQNRISRAMLD-------SKEHSMLARVIVSSKHIGCLLGKG 415
Query: 366 GAIVSEMRKATGTMIRVIANNQFPKCTTD--------------NDQLVQISGQFLN--VQ 409
G+I++EMR +G IR++ ++ PKC ++ +D L+QI+ + N +
Sbjct: 416 GSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFR 475
Query: 410 DALYNATGRLRDNLFVSTQNN--------------GGXXXXXXXXXXXXXXXMDHLSLSQ 455
DA +A N Q++ G DH
Sbjct: 476 DAFPSAN--FPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMN 533
Query: 456 NSNHPSSP------WSWTPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAI 509
N P W PK G + G GL G +SG I
Sbjct: 534 NMYRSGIPPLISERKPWGPK--GILEGGGH----MGLPEFAGGPRRISGFAGG---SQPI 584
Query: 510 VTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVISGTPDET 569
+T+TTVE++V ++ +YGE+G L ++ QIS A V + +P+PGA I+ISGTP++T
Sbjct: 585 ITSTTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQT 644
Query: 570 QAAQSLLQAFILN 582
AAQSL+QAF+++
Sbjct: 645 NAAQSLIQAFVMS 657
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/673 (25%), Positives = 278/673 (41%), Gaps = 128/673 (19%)
Query: 4 PTHFNGPSNGPTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRV 63
P+ P + + V FRLLC AS++G +IGK G +I ++ T +++I++ P +RV
Sbjct: 19 PSGVFSPLDVSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERV 78
Query: 64 IRII-------------------------------------------------SKLDGGE 74
I + K++
Sbjct: 79 ITFLKESEEGSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNP 138
Query: 75 ALLRVFEKVLDVAAEADEFDVLDR-VVCCRLLSDPAQXXXXXXXXXXXXXXIRAETGCKI 133
++R V + AE + D + RLL Q + AE+G +I
Sbjct: 139 TIMRAVMLVFERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQI 198
Query: 134 RVF-SDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTK--TTASRPYEG 190
R+ +++PA SDE+++I G ++ E P D T + P
Sbjct: 199 RILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLPTNLTGP-SS 257
Query: 191 FQHGTFDVPTETCTDKHIDHRQQKSS-----TLPDLSSRYNGNAYGVNSLSAEVNRVSAL 245
+G F T + + + P + + G G E+
Sbjct: 258 HSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMRPPPEI------ 311
Query: 246 DPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITA 305
+TFR+LC ++ VG +IGKGGS I+ LQ ET + I + + ED +I I+
Sbjct: 312 --------LTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISG 363
Query: 306 LENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKG 365
+P+ R SP Q+A+ V +R A D KE S+ AR+++ S +GCL+GKG
Sbjct: 364 PAHPDDRI-SPVQEAIFRVQNRISRAMLD-------SKEHSMLARVIVSSKHIGCLLGKG 415
Query: 366 GAIVSEMRKATGTMIRVIANNQFPKCTTD--------------NDQLVQISGQFLN--VQ 409
G+I++EMR +G IR++ ++ PKC ++ +D L+QI+ + N +
Sbjct: 416 GSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFR 475
Query: 410 DALYNATGRLRDNLFVSTQNN--------------GGXXXXXXXXXXXXXXXMDHLSLSQ 455
DA +A N Q++ G DH
Sbjct: 476 DAFPSAN--FPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMN 533
Query: 456 NSNHPSSP------WSWTPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAI 509
N P W PK G + G GL G +SG I
Sbjct: 534 NMYRSGIPPLISERKPWGPK--GILEGGGH----MGLPEFAGGPRRISGFAGG---SQPI 584
Query: 510 VTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVISGTPDET 569
+T+TTVE++V ++ +YGE+G L ++ QIS A V + +P+PGA I+ISGTP++T
Sbjct: 585 ITSTTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQT 644
Query: 570 QAAQSLLQAFILN 582
AAQSL+QAF+++
Sbjct: 645 NAAQSLIQAFVMS 657
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 150/612 (24%), Positives = 267/612 (43%), Gaps = 68/612 (11%)
Query: 12 NGPTQVT--FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISK 69
+ P VT +RLLCH R G +IGK+G +IKS++Q T A I + + +R+I I
Sbjct: 56 DSPLTVTTSYRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDT 115
Query: 70 L----DG--------GEALLRVFEKVL--DVAAEADE-----FDVLDRVVCCRLLSDPAQ 110
DG EALL + E++L D E +E + V RL+
Sbjct: 116 RRRDPDGRMPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMH 175
Query: 111 XXXXXXXXXXXXXXIRAETGCKIRVF--SDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXX 168
+R ET +IR+ LP S+EI+++ G
Sbjct: 176 VGSLLGKGGKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVIS 235
Query: 169 XRIEECLPFDRT----------KTTASRPYEGFQHGTFDVPTETCTDKHID-HRQQKSST 217
R+ E DR+ P F +P + + R S
Sbjct: 236 SRLRESQHRDRSGERGGGGGQFHGRGHSPERFFPPDDDYLPHVSSGSRRPSVERSGFGSR 295
Query: 218 LPDLSSRYNGNA---YGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIGKGGS 274
+ +SR N +A Y ++ +A V A D + +++ FRILC DRV ++G+ G
Sbjct: 296 IATTNSRNNNHASISYSMDQGAAPV----AHDEQPFYEDLIFRILCPVDRVDRIVGESGG 351
Query: 275 TIRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFD 334
+ LQ+ G ++ I+ V +++++ IT+ E P PAQ+A++ + + V+
Sbjct: 352 ILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTM-FPAQEALLHIQTHIVDLS-- 408
Query: 335 RGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTD 394
+S +T RL++ S+ + CL GK ++ SE+ ++TG ++++ + P C +
Sbjct: 409 ---------DSIITTRLIVPSSDIECLDGKNASL-SEIERSTGASVQILPREELPPCIAN 458
Query: 395 NDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLS 454
D+LVQI G+ ++ + + T +LR ++ +++
Sbjct: 459 TDELVQIVGEIEAARNVILDVTAKLRSYVYRDILQWDTVPPSAPLPSVEASSSNSMATVA 518
Query: 455 Q----NSNHPSSPWSWTPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAIV 510
+ N N S + K +G GS ++G+ D +L +G + ++V
Sbjct: 519 ETATANQNMQSVAVALASKESG-----GSTEMGKQKESDRRD-DLPTGLNRTV----SLV 568
Query: 511 TNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVISGTPDETQ 570
T + +E+++ + + + L ++ ++SGA V + E P + I ISGTP++ +
Sbjct: 569 TRSILEVVIPEYAVPKLLAKSKSKLAQISELSGANVKLVEDRPDEKEKIIQISGTPEQAE 628
Query: 571 AAQSLLQAFILN 582
QSLLQ FIL+
Sbjct: 629 RGQSLLQGFILS 640
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 195/424 (45%), Gaps = 39/424 (9%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD------- 71
FR LC ++GS+IG+ G ++K L+ T A+IRI + P +RV+ + S D
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 72 -------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
+AL ++ ++V+ +D+ + V +LL Q
Sbjct: 109 GDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQN 168
Query: 125 IRAETGCKIRVFSD-KLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTT 183
+R+ETG +IR+ D +PA SDE+++I G R+ +
Sbjct: 169 LRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLG 228
Query: 184 ASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVS 243
++ P G+ PT + L Y G +
Sbjct: 229 SAVPSVYPSGGSLMGPTAG----------PPIVGMAPLVGPYGGYKSDTGDWPPRSMYSA 278
Query: 244 ALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITI 303
D + KE + R++C +G VIGKGG I ++ ++GA I + + +D LITI
Sbjct: 279 PRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSA-KGDDCLITI 337
Query: 304 TALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKES---SVTARLVIQSNQVGC 360
+ E E + SP +A VL+ R E S+++S S T RL++ S+++GC
Sbjct: 338 STKEFFEETF-SPTVEAAVLLQPRCSEK---------SERDSGIISFTTRLLVSSSRIGC 387
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
LIGKGG+I++EMR+ T + IR+++ PK +D+D++VQISG +DAL RLR
Sbjct: 388 LIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
Query: 421 DNLF 424
NLF
Sbjct: 448 ANLF 451
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
+++ FR LC ++G++IG+GG ++ L+ ET A I I V C++R++T+ + +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 311 S------RYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESS----VTARLVIQSNQVGC 360
+ + SPA+ A+ + R V D S +E V A+L++ S+Q+GC
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAE------DLHSDQEEEGGPQVNAKLLVPSDQIGC 157
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
++GKGG IV +R TG IR++ ++ P C +D+LVQISG V+ AL+ RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 421 DN 422
N
Sbjct: 218 HN 219
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 195/424 (45%), Gaps = 39/424 (9%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD------- 71
FR LC ++GS+IG+ G ++K L+ T A+IRI + P +RV+ + S D
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 72 -------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
+AL ++ ++V+ +D+ + V +LL Q
Sbjct: 109 GDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQN 168
Query: 125 IRAETGCKIRVFSD-KLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTT 183
+R+ETG +IR+ D +PA SDE+++I G R+ +
Sbjct: 169 LRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLG 228
Query: 184 ASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVS 243
++ P G+ PT + L Y G +
Sbjct: 229 SAVPSVYPSGGSLMGPTAG----------PPIVGMAPLVGPYGGYKSDTGDWPPRSMYSA 278
Query: 244 ALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITI 303
D + KE + R++C +G VIGKGG I ++ ++GA I + + +D LITI
Sbjct: 279 PRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSA-KGDDCLITI 337
Query: 304 TALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKES---SVTARLVIQSNQVGC 360
+ E E + SP +A VL+ R E S+++S S T RL++ S+++GC
Sbjct: 338 STKEFFEETF-SPTVEAAVLLQPRCSEK---------SERDSGIISFTTRLLVSSSRIGC 387
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
LIGKGG+I++EMR+ T + IR+++ PK +D+D++VQISG +DAL RLR
Sbjct: 388 LIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
Query: 421 DNLF 424
NLF
Sbjct: 448 ANLF 451
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
+++ FR LC ++G++IG+GG ++ L+ ET A I I V C++R++T+ + +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 311 S------RYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESS----VTARLVIQSNQVGC 360
+ + SPA+ A+ + R V D S +E V A+L++ S+Q+GC
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAE------DLHSDQEEEGGPQVNAKLLVPSDQIGC 157
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
++GKGG IV +R TG IR++ ++ P C +D+LVQISG V+ AL+ RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 421 DN 422
N
Sbjct: 218 HN 219
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 195/424 (45%), Gaps = 39/424 (9%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD------- 71
FR LC ++GS+IG+ G ++K L+ T A+IRI + P +RV+ + S D
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 72 -------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
+AL ++ ++V+ +D+ + V +LL Q
Sbjct: 109 GDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQN 168
Query: 125 IRAETGCKIRVFSD-KLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTT 183
+R+ETG +IR+ D +PA SDE+++I G R+ +
Sbjct: 169 LRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLG 228
Query: 184 ASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVS 243
++ P G+ PT + L Y G +
Sbjct: 229 SAVPSVYPSGGSLMGPTAG----------PPIVGMAPLVGPYGGYKSDTGDWPPRSMYSA 278
Query: 244 ALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITI 303
D + KE + R++C +G VIGKGG I ++ ++GA I + + +D LITI
Sbjct: 279 PRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSA-KGDDCLITI 337
Query: 304 TALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKES---SVTARLVIQSNQVGC 360
+ E E + SP +A VL+ R E S+++S S T RL++ S+++GC
Sbjct: 338 STKEFFEETF-SPTVEAAVLLQPRCSEK---------SERDSGIISFTTRLLVSSSRIGC 387
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
LIGKGG+I++EMR+ T + IR+++ PK +D+D++VQISG +DAL RLR
Sbjct: 388 LIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
Query: 421 DNLF 424
NLF
Sbjct: 448 ANLF 451
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
+++ FR LC ++G++IG+GG ++ L+ ET A I I V C++R++T+ + +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 311 S------RYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESS----VTARLVIQSNQVGC 360
+ + SPA+ A+ + R V D S +E V A+L++ S+Q+GC
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAE------DLHSDQEEEGGPQVNAKLLVPSDQIGC 157
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
++GKGG IV +R TG IR++ ++ P C +D+LVQISG V+ AL+ RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 421 DN 422
N
Sbjct: 218 HN 219
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 195/424 (45%), Gaps = 39/424 (9%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD------- 71
FR LC ++GS+IG+ G ++K L+ T A+IRI + P +RV+ + S D
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 72 -------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
+AL ++ ++V+ +D+ + V +LL Q
Sbjct: 109 GDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQN 168
Query: 125 IRAETGCKIRVFSD-KLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTT 183
+R+ETG +IR+ D +PA SDE+++I G R+ +
Sbjct: 169 LRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLG 228
Query: 184 ASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVS 243
++ P G+ PT + L Y G +
Sbjct: 229 SAVPSVYPSGGSLMGPTAG----------PPIVGMAPLVGPYGGYKSDTGDWPPRSMYSA 278
Query: 244 ALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITI 303
D + KE + R++C +G VIGKGG I ++ ++GA I + + +D LITI
Sbjct: 279 PRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSA-KGDDCLITI 337
Query: 304 TALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKES---SVTARLVIQSNQVGC 360
+ E E + SP +A VL+ R E S+++S S T RL++ S+++GC
Sbjct: 338 STKEFFEETF-SPTVEAAVLLQPRCSEK---------SERDSGIISFTTRLLVSSSRIGC 387
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
LIGKGG+I++EMR+ T + IR+++ PK +D+D++VQISG +DAL RLR
Sbjct: 388 LIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
Query: 421 DNLF 424
NLF
Sbjct: 448 ANLF 451
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
+++ FR LC ++G++IG+GG ++ L+ ET A I I V C++R++T+ + +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 311 S------RYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESS----VTARLVIQSNQVGC 360
+ + SPA+ A+ + R V D S +E V A+L++ S+Q+GC
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAE------DLHSDQEEEGGPQVNAKLLVPSDQIGC 157
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
++GKGG IV +R TG IR++ ++ P C +D+LVQISG V+ AL+ RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 421 DN 422
N
Sbjct: 218 HN 219
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 200/391 (51%), Gaps = 59/391 (15%)
Query: 215 SSTLPDLSSRY--NGNAYGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIGKG 272
++T+ DL Y GN + + S V VS+L + +E+ R+LC +D++G +IGKG
Sbjct: 274 ATTMQDLHGGYADTGNTWPLYSSPLPV--VSSLGA-SQSEELIVRMLCPSDKIGQLIGKG 330
Query: 273 GSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAG 332
G TI+ ++ +GA I + ++ LITITA E+ S S A +AV+L+ +
Sbjct: 331 GGTIKRMRQASGARIEVDDSKARHDECLITITATES-TSDLKSVAVEAVLLLQEK----- 384
Query: 333 FDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCT 392
+ ++ V+ RL++ S +GC+IG+ GAI++E+RK T I++ +N+ PK
Sbjct: 385 ------INDEDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQISRSNK-PKYA 437
Query: 393 TDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDH-- 450
DND+LV++ G+ V+DAL RLR+++ + +DH
Sbjct: 438 DDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKD-------------------IDHNR 478
Query: 451 ----LSLSQNSNHPSSP--WSWTPKSAGAI--NSRGSNDVGRGL--TPQNGDLELVSGSK 500
SL +S+ S+P S P +A A+ + R + G G+ + + + S
Sbjct: 479 HIGSESLYASSSVLSAPPMLSSIPATAPALAYDQRTGSGTGLGMHSSRSHYGYDSYSMED 538
Query: 501 TAIVSKTAIVTN----------TTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHE 550
S ++ TN +T+E++V + + V G+ G NL +++ISGA V + E
Sbjct: 539 NGYGSMSSYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKISGATVEISE 598
Query: 551 PLPGASTRAIVISGTPDETQAAQSLLQAFIL 581
R +ISGT +E +AA++L+QAFI+
Sbjct: 599 SKSYRGDRVALISGTSEEKRAAENLIQAFIM 629
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 241 RVSALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRL 300
RV+ D R + + +RILC N+ +G+VIGK G I +++ E+ A + + P + R+
Sbjct: 29 RVNDRDERDKGELIAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRV 88
Query: 301 ITI-----------TALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTA 349
ITI E + AQ A++ V S ++ + D K+++
Sbjct: 89 ITIFCHVKNKEEIEIEDEFDNEKPLCAAQDALIKVHS-AISNSIETAGDSEKKRKNKDEC 147
Query: 350 RLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVI---ANNQFPKCTTDNDQLVQISGQFL 406
++++ S+Q LIGK GA + ++R T T I+V+ A + C + D V + G+
Sbjct: 148 QILVPSSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLV-GESE 206
Query: 407 NVQDALY 413
V+ AL+
Sbjct: 207 AVKRALF 213
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 118/306 (38%), Gaps = 22/306 (7%)
Query: 16 QVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGGEA 75
++ R+LC + ++G LIGK G IK ++QA+ ARI +DD+ + +I I + +
Sbjct: 311 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 370
Query: 76 LLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXIRAETGCKIRV 135
E VL + + ++ D D V RLL IR T I++
Sbjct: 371 KSVAVEAVLLLQEKINDED--DAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQI 428
Query: 136 FSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECL----PFDRTKTTASRPYEGF 191
P +DE++E+ G R+ E + D + S
Sbjct: 429 SRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHNRHIGSESLYAS 488
Query: 192 QHGTFDVPT-----ETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVSALD 246
P T D R + L SSR + YG +S S E N ++
Sbjct: 489 SSVLSAPPMLSSIPATAPALAYDQRTGSGTGLGMHSSRSH---YGYDSYSMEDNGYGSMS 545
Query: 247 PRA--------LQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECED 298
A L T ++ + VG V+GKGG+ + ++ +GA + I+ D
Sbjct: 546 SYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYRGD 605
Query: 299 RLITIT 304
R+ I+
Sbjct: 606 RVALIS 611
>Medtr5g049770.1 | RNA-binding KH domain protein | HC |
chr5:21769759-21766560 | 20130731
Length = 241
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 354 QSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALY 413
S+QVG ++GKGG +S +R +G+ IRV P C +++L+ I+G + +++AL
Sbjct: 27 HSSQVGAIVGKGGKNISNIRNNSGSNIRVCP---APHCAAKDEELILITGGYRCIENALR 83
Query: 414 NATGRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWTPKSAGA 473
T +R+N T + S+ P + P++AG
Sbjct: 84 KITSIIRNNPL--TNEVLAEARIKPSFPLNKDTVRSKFITRKKSSFPFA--RVPPQNAGV 139
Query: 474 INSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGG 533
++ + G T +E V + IV A VTNTTVEI+VS + SVYGEDGG
Sbjct: 140 YQAKKVTENGESHT---NLIENVEPGRGNIV---ATVTNTTVEIIVSEHVFGSVYGEDGG 193
Query: 534 NLDRLKQISGAKVTVHEPLP-GASTRAIVISGTPDETQAAQSLLQA 578
NLDR++QISGA VTV +P G S +VISGTPD+T AAQSLLQA
Sbjct: 194 NLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQA 239
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 106/184 (57%), Gaps = 13/184 (7%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
Q + +R LC ++G++IG+GG ++ L+ +T A I I V C++R++T+ ++ +
Sbjct: 46 QDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDES 105
Query: 311 S------RYPSPAQKAVVLVFSRSVEAGFDRGV---DFGSKKESS---VTARLVIQSNQV 358
+ + PA A+V + + + RGV D +K VTA+L++ S+Q+
Sbjct: 106 NDFEDSGEFMCPAMDALVRIHQKVIAEDL-RGVEDEDVDMEKVDGGDLVTAKLLVASDQI 164
Query: 359 GCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGR 418
GC+IGKGG IV +R TG IR++ +++ P C ++D+LVQISG+ V+ AL R
Sbjct: 165 GCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAAR 224
Query: 419 LRDN 422
L DN
Sbjct: 225 LHDN 228
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 252 KEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPES 311
KE + R +C +G VIGKGG I ++ ++GANI + E +D LI I+A E E
Sbjct: 294 KEFSVRFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFED 353
Query: 312 RYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSE 371
+ + + AV+L S + D G+ S T+RL++ S+++GCLIGKGG+I++E
Sbjct: 354 PFSATIEAAVLLQPRCSEKVERDSGI-------LSFTSRLLVSSSRIGCLIGKGGSIITE 406
Query: 372 MRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLF 424
MR+ T IR+++ PK T++D++VQISG+ +DAL RLR NLF
Sbjct: 407 MRRLTKANIRILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLF 459
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 22/159 (13%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKL-------D 71
+R LC ++GS+IG+ G ++K L+ T A+IRI + P +RV+ + S D
Sbjct: 51 YRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFED 110
Query: 72 GGE-------ALLRVFEKVL--DVAAEADEFDVLDRV-----VCCRLLSDPAQXXXXXXX 117
GE AL+R+ +KV+ D+ DE +++V V +LL Q
Sbjct: 111 SGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGK 170
Query: 118 XXXXXXXIRAETGCKIRVFS-DKLPAGTKPSDEIIEIQG 155
IR+ETG +IR+ D+LP SDE+++I G
Sbjct: 171 GGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISG 209
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 106/184 (57%), Gaps = 13/184 (7%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
Q + +R LC ++G++IG+GG ++ L+ +T A I I V C++R++T+ ++ +
Sbjct: 46 QDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDES 105
Query: 311 S------RYPSPAQKAVVLVFSRSVEAGFDRGV---DFGSKKESS---VTARLVIQSNQV 358
+ + PA A+V + + + RGV D +K VTA+L++ S+Q+
Sbjct: 106 NDFEDSGEFMCPAMDALVRIHQKVIAEDL-RGVEDEDVDMEKVDGGDLVTAKLLVASDQI 164
Query: 359 GCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGR 418
GC+IGKGG IV +R TG IR++ +++ P C ++D+LVQISG+ V+ AL R
Sbjct: 165 GCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAAR 224
Query: 419 LRDN 422
L DN
Sbjct: 225 LHDN 228
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 252 KEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPES 311
KE + R +C +G VIGKGG I ++ ++GANI + E +D LI I+A E E
Sbjct: 294 KEFSVRFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFED 353
Query: 312 RYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSE 371
+ + + AV+L S + D G+ S T+RL++ S+++GCLIGKGG+I++E
Sbjct: 354 PFSATIEAAVLLQPRCSEKVERDSGI-------LSFTSRLLVSSSRIGCLIGKGGSIITE 406
Query: 372 MRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLF 424
MR+ T IR+++ PK T++D++VQISG+ +DAL RLR NLF
Sbjct: 407 MRRLTKANIRILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLF 459
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 22/159 (13%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKL-------D 71
+R LC ++GS+IG+ G ++K L+ T A+IRI + P +RV+ + S D
Sbjct: 51 YRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFED 110
Query: 72 GGE-------ALLRVFEKVL--DVAAEADEFDVLDRV-----VCCRLLSDPAQXXXXXXX 117
GE AL+R+ +KV+ D+ DE +++V V +LL Q
Sbjct: 111 SGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGK 170
Query: 118 XXXXXXXIRAETGCKIRVFS-DKLPAGTKPSDEIIEIQG 155
IR+ETG +IR+ D+LP SDE+++I G
Sbjct: 171 GGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISG 209
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 182/400 (45%), Gaps = 39/400 (9%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD------- 71
FR LC ++GS+IG+ G ++K L+ T A+IRI + P +RV+ + S D
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 72 -------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
+AL ++ ++V+ +D+ + V +LL Q
Sbjct: 109 GDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQN 168
Query: 125 IRAETGCKIRVFSD-KLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTT 183
+R+ETG +IR+ D +PA SDE+++I G R+ +
Sbjct: 169 LRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLG 228
Query: 184 ASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVS 243
++ P G+ PT + L Y G +
Sbjct: 229 SAVPSVYPSGGSLMGPTAG----------PPIVGMAPLVGPYGGYKSDTGDWPPRSMYSA 278
Query: 244 ALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITI 303
D + KE + R++C +G VIGKGG I ++ ++GA I + + +D LITI
Sbjct: 279 PRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSA-KGDDCLITI 337
Query: 304 TALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKES---SVTARLVIQSNQVGC 360
+ E E + SP +A VL+ R E S+++S S T RL++ S+++GC
Sbjct: 338 STKEFFEETF-SPTVEAAVLLQPRCSEK---------SERDSGIISFTTRLLVSSSRIGC 387
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQ 400
LIGKGG+I++EMR+ T + IR+++ PK +D+D++VQ
Sbjct: 388 LIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQ 427
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
+++ FR LC ++G++IG+GG ++ L+ ET A I I V C++R++T+ + +
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 311 S------RYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESS----VTARLVIQSNQVGC 360
+ + SPA+ A+ + R V D S +E V A+L++ S+Q+GC
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAE------DLHSDQEEEGGPQVNAKLLVPSDQIGC 157
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLR 420
++GKGG IV +R TG IR++ ++ P C +D+LVQISG V+ AL+ RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 421 DN 422
N
Sbjct: 218 HN 219
>Medtr7g006750.1 | pectinacetylesterase family protein | LC |
chr7:1220390-1217478 | 20130731
Length = 816
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 86/126 (68%), Gaps = 4/126 (3%)
Query: 198 VPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVSALDPRALQKEVTFR 257
VP +T T+ H+DH Q+SSTLP S+ + A GV+SLS VN+VS+L+ +A Q+E R
Sbjct: 159 VPRKTLTNLHVDHLLQRSSTLPSSSNSH---ATGVHSLSGGVNKVSSLEAKAHQQETALR 215
Query: 258 ILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPA 317
I+C NDR+G IG+ G+ IR Q+ETG IS+ P V ECEDRLIT TA E+PE RY SP
Sbjct: 216 IICCNDRIGGDIGRSGNMIRVPQSETGVTISVGPSVAECEDRLIT-TASESPELRYSSPP 274
Query: 318 QKAVVL 323
A V
Sbjct: 275 SSAHVF 280
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 122/212 (57%), Gaps = 18/212 (8%)
Query: 215 SSTLPDLSSRY--NGNAYGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIGKG 272
++T+ DL Y GN + + S V VS+L + +E+ R+LC +D++G +IGKG
Sbjct: 275 ATTMQDLHGGYADTGNTWPLYSSPLPV--VSSLGA-SQSEELIVRMLCPSDKIGQLIGKG 331
Query: 273 GSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAG 332
G TI+ ++ +GA I + ++ LITITA E+ S S A +AV+L+ +
Sbjct: 332 GGTIKRMRQASGARIEVDDSKARHDECLITITATES-TSDLKSVAVEAVLLLQEK----- 385
Query: 333 FDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCT 392
+ ++ V+ RL++ S +GC+IG+ GAI++E+RK T I++ +N+ PK
Sbjct: 386 ------INDEDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQISRSNK-PKYA 438
Query: 393 TDNDQLVQISGQFLNVQDALYNATGRLRDNLF 424
DND+LV++ G+ V+DAL RLR+++
Sbjct: 439 DDNDELVEVVGEVDCVRDALIQIVLRLREDVL 470
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 15/187 (8%)
Query: 241 RVSALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRL 300
RV+ D R + + +RILC N+ +G+VIGK G I +++ E+ A + + P + R+
Sbjct: 29 RVNDRDERDKGELIAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRV 88
Query: 301 ITI-----------TALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTA 349
ITI E + AQ A++ V S ++ + D K+++
Sbjct: 89 ITIFCHVKNKEEIEIEDEFDNEKPLCAAQDALIKVHS-AISNSIETAGDSEKKRKNKDEC 147
Query: 350 RLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVI---ANNQFPKCTTDNDQLVQISGQFL 406
++++ S+Q LIGK GA + ++R T T I+V+ A + C + D V I+G+
Sbjct: 148 QILVPSSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESE 207
Query: 407 NVQDALY 413
V+ AL+
Sbjct: 208 AVKRALF 214
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 105/278 (37%), Gaps = 22/278 (7%)
Query: 16 QVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGGEA 75
++ R+LC + ++G LIGK G IK ++QA+ ARI +DD+ + +I I + +
Sbjct: 312 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 371
Query: 76 LLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXIRAETGCKIRV 135
E VL + + ++ D D V RLL IR T I++
Sbjct: 372 KSVAVEAVLLLQEKINDED--DAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQI 429
Query: 136 FSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECL----PFDRTKTTASRPYEGF 191
P +DE++E+ G R+ E + D + S
Sbjct: 430 SRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHNRHIGSESLYAS 489
Query: 192 QHGTFDVPT-----ETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVSALD 246
P T D R + L SSR + YG +S S E N ++
Sbjct: 490 SSVLSAPPMLSSIPATAPALAYDQRTGSGTGLGMHSSR---SHYGYDSYSMEDNGYGSMS 546
Query: 247 PRA--------LQKEVTFRILCSNDRVGAVIGKGGSTI 276
A L T ++ + VG V+GKGG+ +
Sbjct: 547 SYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANL 584
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 73/372 (19%)
Query: 253 EVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISI--APPVVECEDRLITITALENPE 310
E FR+L +VG +IG+ G I+ + ET A + I PP +R + ++A + P
Sbjct: 114 ESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPP--GTSERAVMVSAKDEPG 171
Query: 311 SRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVS 370
S P PA ++ R ++ G+D S V+ + ++ ++Q G LIGK G V
Sbjct: 172 SSLP-PAVDGLLKAHKRLID-----GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVK 225
Query: 371 EMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNN 430
+++A+ ++RV+ P +D++V++ G + V A+ L+ L
Sbjct: 226 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLV------ 279
Query: 431 GGXXXXXXXXXXXXXXXMDHLSLSQNSNH--------PSSPWSWTPKSAGAINSRGSNDV 482
+ +S+ +NH P SW P N+ G
Sbjct: 280 -----------DRSIIPIFEMSMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGP-- 326
Query: 483 GRGLTPQ--------------------------------NGDLELVSGSKTAIVSKTAIV 510
G GL PQ D + + + S ++V
Sbjct: 327 GFGLAPQFMPPRRQVDNYYPPAEMPPPLDKQPHHGISAYGRDASIGVHASSNTQSAPSMV 386
Query: 511 TNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEP--LPGASTRAIVISGTPDE 568
T T ++ + D+V G G N+ +++ SGA VT+ E +PG T + ISGT +
Sbjct: 387 TQITQQMQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMT--VEISGTASQ 444
Query: 569 TQAAQSLLQAFI 580
Q AQ L+Q F+
Sbjct: 445 VQTAQQLIQNFM 456
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGG 73
P + FR+L A +VG +IG+ G IK + + T AR++I D PP + +R + + +K + G
Sbjct: 112 PGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPG 171
Query: 74 -------EALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXIR 126
+ LL+ ++++D D L V + L +Q I+
Sbjct: 172 SSLPPAVDGLLKAHKRLID---GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQ 228
Query: 127 AETGCKIRVF-SDKLPAGTKPSDEIIEIQG 155
+ C +RV ++ LP D ++E+ G
Sbjct: 229 EASNCIVRVLGAEDLPVFALQDDRVVEVVG 258
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 73/372 (19%)
Query: 253 EVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISI--APPVVECEDRLITITALENPE 310
E FR+L +VG +IG+ G I+ + ET A + I PP +R + ++A + P
Sbjct: 46 ESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPP--GTSERAVMVSAKDEPG 103
Query: 311 SRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVS 370
S P PA ++ R ++ G+D S V+ + ++ ++Q G LIGK G V
Sbjct: 104 SSLP-PAVDGLLKAHKRLID-----GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVK 157
Query: 371 EMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNN 430
+++A+ ++RV+ P +D++V++ G + V A+ L+ L
Sbjct: 158 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLV------ 211
Query: 431 GGXXXXXXXXXXXXXXXMDHLSLSQNSNH--------PSSPWSWTPKSAGAINSRGSNDV 482
+ +S+ +NH P SW P N+ G
Sbjct: 212 -----------DRSIIPIFEMSMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGP-- 258
Query: 483 GRGLTPQ--------------------------------NGDLELVSGSKTAIVSKTAIV 510
G GL PQ D + + + S ++V
Sbjct: 259 GFGLAPQFMPPRRQVDNYYPPAEMPPPLDKQPHHGISAYGRDASIGVHASSNTQSAPSMV 318
Query: 511 TNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEP--LPGASTRAIVISGTPDE 568
T T ++ + D+V G G N+ +++ SGA VT+ E +PG T + ISGT +
Sbjct: 319 TQITQQMQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMT--VEISGTASQ 376
Query: 569 TQAAQSLLQAFI 580
Q AQ L+Q F+
Sbjct: 377 VQTAQQLIQNFM 388
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGG 73
P + FR+L A +VG +IG+ G IK + + T AR++I D PP + +R + + +K + G
Sbjct: 44 PGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPG 103
Query: 74 -------EALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXIR 126
+ LL+ ++++D D L V + L +Q I+
Sbjct: 104 SSLPPAVDGLLKAHKRLID---GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQ 160
Query: 127 AETGCKIRVF-SDKLPAGTKPSDEIIEIQG 155
+ C +RV ++ LP D ++E+ G
Sbjct: 161 EASNCIVRVLGAEDLPVFALQDDRVVEVVG 190
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 8/180 (4%)
Query: 248 RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALE 307
RA ++V FRI+ + ++G VIGK G I+ ++ T ANI IA + E+R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 308 NPESRYPSPAQKA---VVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
N E + A+KA + + + + FD + ++ T RL+I +Q G LIG
Sbjct: 154 NDE--MVTDAEKALEQIANLILKEDNSSFD-ASKLTAGHVAANTIRLLIAGSQAGGLIGM 210
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTT--DNDQLVQISGQFLNVQDALYNATGRLRDN 422
G + ++R ++G MI V+A +Q P C + ++D++VQ+SG V AL +LR+N
Sbjct: 211 SGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 8/180 (4%)
Query: 248 RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALE 307
RA ++V FRI+ + ++G VIGK G I+ ++ T ANI IA + E+R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 308 NPESRYPSPAQKA---VVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
N E + A+KA + + + + FD + ++ T RL+I +Q G LIG
Sbjct: 154 NDE--MVTDAEKALEQIANLILKEDNSSFD-ASKLTAGHVAANTIRLLIAGSQAGGLIGM 210
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTT--DNDQLVQISGQFLNVQDALYNATGRLRDN 422
G + ++R ++G MI V+A +Q P C + ++D++VQ+SG V AL +LR+N
Sbjct: 211 SGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 8/180 (4%)
Query: 248 RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALE 307
RA ++V FRI+ + ++G VIGK G I+ ++ T ANI IA + E+R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 308 NPESRYPSPAQKA---VVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
N E + A+KA + + + + FD + ++ T RL+I +Q G LIG
Sbjct: 154 NDE--MVTDAEKALEQIANLILKEDNSSFD-ASKLTAGHVAANTIRLLIAGSQAGGLIGM 210
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTT--DNDQLVQISGQFLNVQDALYNATGRLRDN 422
G + ++R ++G MI V+A +Q P C + ++D++VQ+SG V AL +LR+N
Sbjct: 211 SGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 8/180 (4%)
Query: 248 RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALE 307
RA ++V FRI+ + ++G VIGK G I+ ++ T ANI IA + E+R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 308 NPESRYPSPAQKA---VVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
N E + A+KA + + + + FD + ++ T RL+I +Q G LIG
Sbjct: 154 NDE--MVTDAEKALEQIANLILKEDNSSFD-ASKLTAGHVAANTIRLLIAGSQAGGLIGM 210
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTT--DNDQLVQISGQFLNVQDALYNATGRLRDN 422
G + ++R ++G MI V+A +Q P C + ++D++VQ+SG V AL +LR+N
Sbjct: 211 SGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 8/180 (4%)
Query: 248 RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALE 307
RA ++V FRI+ + ++G VIGK G I+ ++ T ANI IA + E+R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 308 NPESRYPSPAQKA---VVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
N E + A+KA + + + + FD + ++ T RL+I +Q G LIG
Sbjct: 154 NDE--MVTDAEKALEQIANLILKEDNSSFD-ASKLTAGHVAANTIRLLIAGSQAGGLIGM 210
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTT--DNDQLVQISGQFLNVQDALYNATGRLRDN 422
G + ++R ++G MI V+A +Q P C + ++D++VQ+SG V AL +LR+N
Sbjct: 211 SGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 256 FRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPS 315
FR++ +VG +IG+ G I+ L +ET A + + + DR+I I+ E E+ S
Sbjct: 72 FRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILISGKEELEAAI-S 130
Query: 316 PAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTA---RLVIQSNQVGCLIGKGGAIVSEM 372
PA AV+ +F R +G D +K + VT RL++ S Q LIGK G I+ +
Sbjct: 131 PAMDAVIRIFKRV--SGLSE-TDSENKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRSI 187
Query: 373 RKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNL 423
++++G +RV++ ++ T +++V + G+ L V AL G LR L
Sbjct: 188 QESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFL 238
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 23/224 (10%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD-- 71
P FRL+ +VG +IG+ G +IK L T AR+R+ DA PDR+I I K +
Sbjct: 67 PGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILISGKEELE 126
Query: 72 -----GGEALLRVFEKVLDVAAEADEFDVLDRVVCC--RLLSDPAQXXXXXXXXXXXXXX 124
+A++R+F++V ++ E V C RLL Q
Sbjct: 127 AAISPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRS 186
Query: 125 IRAETGCKIRVFS-DKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEE------CLPF 177
I+ +G +RV S D++ + I+++QG + + LP
Sbjct: 187 IQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLVDHSILPV 246
Query: 178 DRTKTTASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDL 221
AS P + Q ET +DK + H ++S D+
Sbjct: 247 YEKTYNASLPQQDRQ-------AETWSDKPLLHTTSQTSMFSDI 283
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 1/172 (0%)
Query: 256 FRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPS 315
FR++ +VG +IG+ G I+ ET A I + V DR++ I+ E+ E+ S
Sbjct: 46 FRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPL-S 104
Query: 316 PAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKA 375
PA A++ +F R + + + + RL++ S Q LIGK G+ + +++
Sbjct: 105 PAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQEN 164
Query: 376 TGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVST 427
TG +IRV++ ++ P +++++ + G+ L V AL G LR L S+
Sbjct: 165 TGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLRKFLVDSS 216
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD-- 71
P FRL+ +VG +IG+ G +IK + T ARIR+ DAP +PDR++ I K D
Sbjct: 41 PGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLE 100
Query: 72 -----GGEALLRVFEKVLDVAAEADEFDVLDRVVCC--RLLSDPAQXXXXXXXXXXXXXX 124
+A+LR+F++V ++ + V C RLL Q
Sbjct: 101 APLSPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKA 160
Query: 125 IRAETGCKIRVFS-DKLPAGTKPSDEIIEIQG 155
I+ TG IRV S D+LP+ + II++QG
Sbjct: 161 IQENTGAVIRVLSGDELPSYAGADERIIDLQG 192
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD-- 71
P + FR+L A +VGS+IG+ G IK + + T AR++I D P + +R + + +K +
Sbjct: 162 PGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPD 221
Query: 72 -----GGEALLRVFEKVLDVAAE-ADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXI 125
E LLRV ++V +V +E AD R RLL Q
Sbjct: 222 RPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIF 281
Query: 126 RAETGCKIRVF-SDKLPAGTKPSDEIIEIQG 155
+ TGC IR+ S+ LP D I+EIQG
Sbjct: 282 QDSTGCNIRILGSEHLPIFALRDDSIVEIQG 312
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 2/171 (1%)
Query: 253 EVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESR 312
E FR+L +VG++IG+ G I+ + ET A + I +R + ++A E P+
Sbjct: 164 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRP 223
Query: 313 YPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEM 372
P PA + ++ V + V D RL++ Q G LIGK G+ +
Sbjct: 224 IP-PAVEGLLRVH-KQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIF 281
Query: 373 RKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNL 423
+ +TG IR++ + P +D +V+I G+ V A+ LR L
Sbjct: 282 QDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFL 332
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD-- 71
P + FR+L A +VGS+IG+ G IK + + T AR++I D P + +R + + +K +
Sbjct: 162 PGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPD 221
Query: 72 -----GGEALLRVFEKVLDVAAE-ADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXI 125
E LLRV ++V +V +E AD R RLL Q
Sbjct: 222 RPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIF 281
Query: 126 RAETGCKIRVF--SDKLPAGTKPSDEIIEIQG 155
+ TGC IR+ ++ LP D I+EIQG
Sbjct: 282 QDSTGCNIRILGSAEHLPIFALRDDSIVEIQG 313
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 3/172 (1%)
Query: 253 EVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESR 312
E FR+L +VG++IG+ G I+ + ET A + I +R + ++A E P+
Sbjct: 164 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRP 223
Query: 313 YPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEM 372
P PA + ++ V + V D RL++ Q G LIGK G+ +
Sbjct: 224 IP-PAVEGLLRVH-KQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIF 281
Query: 373 RKATGTMIRVIAN-NQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNL 423
+ +TG IR++ + P +D +V+I G+ V A+ LR L
Sbjct: 282 QDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFL 333
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD-- 71
P + FR+L A +VGS+IG+ G IK + + T AR++I D P + +R + + +K +
Sbjct: 162 PGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPD 221
Query: 72 -----GGEALLRVFEKVLDVAAE-ADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXI 125
E LLRV ++V +V +E AD R RLL Q
Sbjct: 222 RPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIF 281
Query: 126 RAETGCKIRVF--SDKLPAGTKPSDEIIEIQG 155
+ TGC IR+ ++ LP D I+EIQG
Sbjct: 282 QDSTGCNIRILGSAEHLPIFALRDDSIVEIQG 313
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 3/172 (1%)
Query: 253 EVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESR 312
E FR+L +VG++IG+ G I+ + ET A + I +R + ++A E P+
Sbjct: 164 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRP 223
Query: 313 YPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEM 372
P PA + ++ V + V D RL++ Q G LIGK G+ +
Sbjct: 224 IP-PAVEGLLRVH-KQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIF 281
Query: 373 RKATGTMIRVIAN-NQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNL 423
+ +TG IR++ + P +D +V+I G+ V A+ LR L
Sbjct: 282 QDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFL 333
>Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-31537882 |
20130731
Length = 188
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 341 SKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQ 400
+K S+ +++ +N +GCLIGKGG+I++EMR+ T + IR+++ PK +D+D++VQ
Sbjct: 24 TKIGHSMGKAVIVAANMIGCLIGKGGSIITEMRRLTRSNIRILSKENLPKIASDDDEMVQ 83
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 26/180 (14%)
Query: 257 RILCSNDRVGAVIGKGGSTIRALQNETGANISI-----APPVVECEDRLITITALENPES 311
+I N RVG +IGKGG TI+ LQ ++GA I + A P +RL+ +T + +
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADP--NSPNRLVELTGTSDAIA 172
Query: 312 RYPSPAQKAVVLVFSRSVEAGFD----RGVDFGSKKESSVTARLVIQSNQVGCLIGKGGA 367
A+K + V + + G R G E S + I +N+VG +IGKGG
Sbjct: 173 T----AEKLIKEVLAEAESGGNGLVTRRMTGQGGADEFS----MKIPNNKVGLIIGKGGE 224
Query: 368 IVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQ------DALYNATGRLRD 421
+ M+ TG I+VI + P T ++ ++I G ++ D++ + RLR+
Sbjct: 225 TIKSMQATTGARIQVIPLH-LPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENRLRN 283
>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
chr3:48031833-48027169 | 20130731
Length = 605
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 38/179 (21%)
Query: 245 LDPRALQKEVTF----RILCSNDRVGAVIGKGGSTIRALQNETGANISI-----APPVVE 295
L P+ Q+ ++ +I N RVG +IGKGG TI+ LQ ++GA I + A P
Sbjct: 73 LKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADP--N 130
Query: 296 CEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQS 355
+ R++ + + P++ S A+K + V + EAG G T R+V QS
Sbjct: 131 SQTRMVEL--MGTPDAV--SSAEKLINEVLAE-AEAGASGG----------GTRRMVAQS 175
Query: 356 -----------NQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISG 403
N+VG +IGKGG + M+ +TG I+VI + P T ++ ++I G
Sbjct: 176 GGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHP-PPGDTSTERTLKIDG 233
>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
chr3:48040831-48036380 | 20130731
Length = 605
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 37/159 (23%)
Query: 245 LDPRALQKEVTF----RILCSNDRVGAVIGKGGSTIRALQNETGANISI-----APPVVE 295
L P+ Q+ ++ +I N RVG +IGKGG TI+ LQ ++GA I + A P
Sbjct: 73 LKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADP--N 130
Query: 296 CEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQS 355
+ R++ + + P++ S A+K + V + EAG G T R+V QS
Sbjct: 131 SQTRMVEL--MGTPDAV--SSAEKLINEVLAE-AEAGASVG----------GTRRMVAQS 175
Query: 356 -----------NQVGCLIGKGGAIVSEMRKATGTMIRVI 383
N+VG +IGKGG + M+ +TG I+VI
Sbjct: 176 GGDEFVMQIPNNKVGLIIGKGGETIKGMQASTGARIQVI 214
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 139/341 (40%), Gaps = 64/341 (18%)
Query: 250 LQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA---PPVVECEDRLITITAL 306
++K R L SN G+VIGKGGSTI Q+++GA I ++ DR+I ++
Sbjct: 32 VEKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGA 91
Query: 307 ENPESRYPSPAQKAVVLVFSR---SVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIG 363
N R AV L+ S+ + + D V E RL++ + G +IG
Sbjct: 92 INEVLR-------AVELILSKLLSELHSEDDNDV------EPKTKVRLIVPNGSCGGIIG 138
Query: 364 KGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNL 423
KGGA + + + I++ + Q ND++V ++G + +L ++
Sbjct: 139 KGGATIRSFIEESQAGIKI--SPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDP 196
Query: 424 FVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWT-----PKSAGAINSRG 478
S + S + S + P+++ P + +N R
Sbjct: 197 HYSHSMSSPFT----------------YSGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRP 240
Query: 479 SNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRL 538
+ G G QN + + ++ I V+++ I V G G N+ +
Sbjct: 241 N---GTGAKFQNSKED----------------RSNSMTIGVADEHIGLVVGRGGRNISDI 281
Query: 539 KQISGAKVTVH---EPLPGASTRAIVISGTPDETQAAQSLL 576
Q SGAK+ + + + G + R + I+G+ + A+S++
Sbjct: 282 SQTSGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAESMI 322
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 139/341 (40%), Gaps = 64/341 (18%)
Query: 250 LQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA---PPVVECEDRLITITAL 306
++K R L SN G+VIGKGGSTI Q+++GA I ++ DR+I ++
Sbjct: 32 VEKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGA 91
Query: 307 ENPESRYPSPAQKAVVLVFSR---SVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIG 363
N R AV L+ S+ + + D V E RL++ + G +IG
Sbjct: 92 INEVLR-------AVELILSKLLSELHSEDDNDV------EPKTKVRLIVPNGSCGGIIG 138
Query: 364 KGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNL 423
KGGA + + + I++ + Q ND++V ++G + +L ++
Sbjct: 139 KGGATIRSFIEESQAGIKI--SPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDP 196
Query: 424 FVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWT-----PKSAGAINSRG 478
S + S + S + P+++ P + +N R
Sbjct: 197 HYSHSMSSPFT----------------YSGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRP 240
Query: 479 SNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRL 538
+ G G QN + + ++ I V+++ I V G G N+ +
Sbjct: 241 N---GTGAKFQNSKED----------------RSNSMTIGVADEHIGLVVGRGGRNISDI 281
Query: 539 KQISGAKVTVH---EPLPGASTRAIVISGTPDETQAAQSLL 576
Q SGAK+ + + + G + R + I+G+ + A+S++
Sbjct: 282 SQTSGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAESMI 322
>Medtr5g031580.1 | RNA-binding KH domain protein, putative | HC |
chr5:13551924-13551404 | 20130731
Length = 61
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 540 QISGAKVTVHEPL-PGASTRAIVISGTPDETQAAQSLLQAFI 580
QISGA VTV +P G S +VISGTPD+T AAQSLLQAFI
Sbjct: 14 QISGADVTVFDPSNTGTSGGKVVISGTPDQTFAAQSLLQAFI 55
>Medtr5g031530.1 | RNA-binding KH domain protein | HC |
chr5:13536526-13535669 | 20130731
Length = 60
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 540 QISGAKVTVHEPLP-GASTRAIVISGTPDETQAAQSLLQAFI 580
QISGA VTV +P G S +VISGTPD+T AAQSLLQAFI
Sbjct: 13 QISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFI 54
>Medtr5g031500.1 | hypothetical protein | LC |
chr5:13518708-13516266 | 20130731
Length = 105
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 31/41 (75%)
Query: 540 QISGAKVTVHEPLPGASTRAIVISGTPDETQAAQSLLQAFI 580
+IS AKVTV+ P G S +VISG PD+T AAQSLLQAFI
Sbjct: 39 RISNAKVTVYGPSVGRSGGNVVISGMPDQTFAAQSLLQAFI 79