Miyakogusa Predicted Gene

Lj4g3v0385840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0385840.1 Non Characterized Hit- tr|H9VI41|H9VI41_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=C,63.64,4e-17,coiled-coil,NULL; COPI_assoc,Golgi apparatus membrane
protein TVP15; seg,NULL,CUFF.47026.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g009630.1 | COPI associated protein | HC | chr2:1991877-19...   243   6e-65

>Medtr2g009630.1 | COPI associated protein | HC |
           chr2:1991877-1988318 | 20130731
          Length = 197

 Score =  243 bits (621), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 130/148 (87%)

Query: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89
           DPFL+ C+CFS+ITSLAAILC+AVNVLSAVRSFKN + IFDGIFRCYAV+IA FVVL ET
Sbjct: 32  DPFLIVCRCFSLITSLAAILCVAVNVLSAVRSFKNPNTIFDGIFRCYAVLIAIFVVLVET 91

Query: 90  EWSFIIKFSQVLEYWAARGMLQIFVGVMTRAFPDYTRAREWIILLQNIASYLLLACGFVY 149
           EWSFIIKF QVLEYWA RGMLQIF  VMTRAFPDY   R+ +++LQNIA YLLL+CG VY
Sbjct: 92  EWSFIIKFWQVLEYWAGRGMLQIFAAVMTRAFPDYNGERKDLVILQNIACYLLLSCGVVY 151

Query: 150 LISGVLCIGFLKRARQKQAITTEQAAKD 177
           +ISGVLC+GFLKR RQKQ IT EQAAKD
Sbjct: 152 VISGVLCVGFLKRRRQKQEITREQAAKD 179