Miyakogusa Predicted Gene
- Lj4g3v0385820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0385820.1 Non Characterized Hit- tr|K4AFG9|K4AFG9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si037626,44.83,3e-18,seg,NULL; DUF565,Uncharacterised protein
family Ycf20,CUFF.47025.1
(208 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g093535.1 | antigen receptor-like protein | HC | chr4:3715... 295 1e-80
Medtr4g025400.1 | ycf20-like protein | HC | chr4:8599913-8595683... 101 6e-22
Medtr4g025390.1 | ycf20-like protein | HC | chr4:8586332-8585427... 97 1e-20
>Medtr4g093535.1 | antigen receptor-like protein | HC |
chr4:37153633-37155590 | 20130731
Length = 201
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/208 (71%), Positives = 164/208 (78%), Gaps = 7/208 (3%)
Query: 1 MACQMGSMNLQWRLSITEHESSKKPYTAFSASRVHGCCCEPILSGLTSNAGGKSSHFPQS 60
MACQMGSMNL +LSITE+E SK+ + +H CCC+P S LT N G K F QS
Sbjct: 1 MACQMGSMNLPSKLSITENEGSKRSF-------IHSCCCQPRFSALTPNVGMKPLPFLQS 53
Query: 61 GFLGRKAVWKIAFALNTGGVPGNGEQQSLNDTSSSFGGTRLGRILSAGGRQLLDKLNSAR 120
FL R+ W +AFALNT G+ GNGEQQSLND+ SS GGTRLGRILSAGGRQLLDKLNSAR
Sbjct: 54 RFLRRRPGWTVAFALNTDGLSGNGEQQSLNDSGSSLGGTRLGRILSAGGRQLLDKLNSAR 113
Query: 121 KNVPMKIFLLLLGFYTANALATILGQTGDWDXXXXXXXXXXIEGIGMLLYRKPPTVRTGR 180
KN P K+FLLLLGFYTANALATILGQTGDWD IEGIGML+Y+KPPT RTGR
Sbjct: 114 KNFPTKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYKKPPTTRTGR 173
Query: 181 LQSFLLMLNYWKAGICLGLFVDAFKLGS 208
LQSFL+M+NYWKAGICLGLFVDAFKLGS
Sbjct: 174 LQSFLVMVNYWKAGICLGLFVDAFKLGS 201
>Medtr4g025400.1 | ycf20-like protein | HC | chr4:8599913-8595683 |
20130731
Length = 186
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 54 SSHFPQSGFLGRKAVWKIAFALNTGGVPGNGEQQSLNDTSSSFGGTRLGRILSAGGRQLL 113
S HF Q + + F T V + + S + ++ + G TR+ R++ L
Sbjct: 44 SFHFAQPCLV-------VGFKRTTWSVRSSIDDSSFSPSNGTNGRTRIIRVIQEFQTTLG 96
Query: 114 DKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDXXXXXXXXXXIEGIGMLLYRKP 173
K+ +KN+PMK+ L+GFY A A +T++GQTGDWD +EGIG L+Y
Sbjct: 97 SKIEKVKKNLPMKLLFFLIGFYCATAFSTVIGQTGDWDILSAALAVVVVEGIGALMYSAS 156
Query: 174 PTVRTGRLQSFLLMLNYWKAGICLGLFVDAFK 205
+ T +S + + NYWKAG+ LGLF+D+FK
Sbjct: 157 LPLFT---KSVISVFNYWKAGLTLGLFLDSFK 185
>Medtr4g025390.1 | ycf20-like protein | HC | chr4:8586332-8585427 |
20130731
Length = 128
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Query: 86 QQSLNDTSSS-----FGGTRLGRILSAGGRQLLDKLNSARKNVPMKIFLLLLGFYTANAL 140
+ S+ND+S S G TR+ R++ L K+ +KN+PMK+ L+GFY A A
Sbjct: 6 RSSINDSSFSPSNGTNGRTRIIRVIQEFRTTLGSKIEKVKKNLPMKLLFFLVGFYCATAF 65
Query: 141 ATILGQTGDWDXXXXXXXXXXIEGIGMLLYRKPPTVRTGRLQSFLLMLNYWKAGICLGLF 200
+T++GQTGDWD EGIG L+Y + T +S + + NYWKAG+ LGLF
Sbjct: 66 STVIGQTGDWDILSAALAVVVAEGIGALMYSASLPLFT---KSLISVFNYWKAGLTLGLF 122
Query: 201 VDAFK 205
+D+FK
Sbjct: 123 LDSFK 127