Miyakogusa Predicted Gene

Lj4g3v0365710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0365710.1 Non Characterized Hit- tr|Q84NQ5|Q84NQ5_ORYSJ
Putative uncharacterized protein P0034A04.119
OS=Oryza,29.36,1e-16,seg,NULL,CUFF.47017.1
         (418 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g093860.1 | transmembrane protein, putative | HC | chr4:37...   469   e-132
Medtr5g065970.1 | transmembrane protein, putative | HC | chr5:27...   181   2e-45
Medtr3g100550.1 | peptide upstream ORF protein | LC | chr3:46246...   173   2e-43
Medtr4g013290.1 | methyltransferase domain protein | HC | chr4:3...    51   2e-06
Medtr7g070530.1 | methyltransferase domain protein | HC | chr7:2...    51   3e-06

>Medtr4g093860.1 | transmembrane protein, putative | HC |
           chr4:37205961-37204481 | 20130731
          Length = 389

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 255/427 (59%), Positives = 289/427 (67%), Gaps = 47/427 (11%)

Query: 1   MGMQHLHGGSRVALNSEAVLVIKVPDAQVLRIVSRSLFLALVFATLPFLGSFLNGSVVSE 60
           MG QHL GG RV L S+A LVIKVPD + LRI SRSLFLAL F   PFLGSFL G VVS 
Sbjct: 1   MGKQHLQGG-RVGLTSDAFLVIKVPDTRFLRIASRSLFLALFFVAFPFLGSFLKGLVVSG 59

Query: 61  FAA-------KSGSSINVEVLGLILHDLGEEGLLRKEDKALILNTPRGFKGGVALLNWDN 113
           F A        +  SINVEVL  ILHDLG+EGLL+KEDKALI++ PRGF+GG +LLNW++
Sbjct: 60  FDAIVVNASTSTFVSINVEVLNSILHDLGDEGLLKKEDKALIMSPPRGFEGGDSLLNWNS 119

Query: 114 EVNVVM-DESYDFVITPSFEDAVFADSVLKVNGIVAFPLS-DNASGSGFRKQSHYKVVYL 171
           EV+VV  DESYDF   PSFEDAV  D VLK++GIVAFPLS D++S +GFRKQS+YKVVYL
Sbjct: 120 EVDVVRHDESYDFAFAPSFEDAVLVDPVLKIDGIVAFPLSLDDSSNAGFRKQSNYKVVYL 179

Query: 172 RRYGEIFVALRKIGLANKNLVDSSPKRKLCQFTTETKXXXXXXXXXXXXXXXXXXDSSPK 231
           RRY  IFVALRKIG+ N NLVDS+P+++LCQF T  K                     P 
Sbjct: 180 RRYDSIFVALRKIGVEN-NLVDSTPRKRLCQFATVAKTTALEGLEDALL--------EPP 230

Query: 232 RKLCQFTTETKXXXXXXXXXXXXXXXXXXVDNSNKNLKIKYLPELLDDSLEGYKRRVFIG 291
           R+                              SNKNLKIKYLPELL DSL+GYKRRVF+G
Sbjct: 231 RQDSA--------------------------KSNKNLKIKYLPELLGDSLDGYKRRVFVG 264

Query: 292 VGLREENKAAVEWFERNYPKKGTKFQIHSLLVAPEEDLPVPHSADFSDWLSKHXXXXXXX 351
           VGLR+ENKAAVEWFERNYPKK TKF+IH+L VAPEE  P     D S WLSKH       
Sbjct: 265 VGLRDENKAAVEWFERNYPKKSTKFEIHNLQVAPEE--PNVPQTDVSAWLSKHVKADEYV 322

Query: 352 XXXXXXXXXXXXXXXRTIYLVDELFLECNNEWWQTGKQKKSRRAYWECLALYGRLRDEGV 411
                          +TI LVDELFL+CNN+WWQTG +KKS RAYW+CL LYGRLRDEGV
Sbjct: 323 VMKAEADVVEEMMRKKTICLVDELFLQCNNQWWQTGTRKKSGRAYWQCLDLYGRLRDEGV 382

Query: 412 AVHQWWG 418
           AVHQWWG
Sbjct: 383 AVHQWWG 389


>Medtr5g065970.1 | transmembrane protein, putative | HC |
           chr5:27789153-27790764 | 20130731
          Length = 419

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 202/442 (45%), Gaps = 79/442 (17%)

Query: 10  SRVALNSEAV-LVIKVPDAQVLRIVSRSLFLALVFATLPFLGSFLNGSVVSEFAAKSGSS 68
           S +A N +A  L+I+ P +   +I  R + LAL  A+ P + S    S VS   +   S+
Sbjct: 24  SALAFNPKAYYLIIRFPYSGTWKIFYRLVLLALFVASFPLISS----SFVSRNPSLDDSA 79

Query: 69  INVEVL---------------GLILHDLGEEGLLRKEDK--ALILNTP-----RGFKGGV 106
            N+++L                L+ +DL  EGL++K +K  A+ L          F+  +
Sbjct: 80  SNMKILPQQQLNGFVNMDQLLTLLFNDLTNEGLVKKSNKHRAVFLGDQELEGVHQFQSFI 139

Query: 107 ALLNWD-------NEVNVVMDESYDFVITPSF-EDAVFADSVLKVNGIVAFPLSDNASGS 158
              N D        + + ++D + DFV T +F   + F D  LK NGI A  + + A+  
Sbjct: 140 DQYNMDYISLNDMEKQSSILDGTVDFVFTSNFPASSQFIDRTLKTNGIAAVVILNAAA-- 197

Query: 159 GFRKQSHYKVVYLRRYGEIFVALRKIGLANKNLVDSSPKRKLCQFTTETKXXXXXXXXXX 218
            F K S+YKV Y+RR+ ++ +A++K          +SP +   Q                
Sbjct: 198 -FHKPSNYKVAYMRRFQKVVMAMKK--------TTTSPVKLGSQ---------------- 232

Query: 219 XXXXXXXXDSSPKRKLCQFTTETKXXXXXXXXXXXXXXXXXXVDNSNKNLK-IKYLPELL 277
                        RKL  + TE K                     S   LK  KYLP+L+
Sbjct: 233 -------------RKLLGYATEAKRAALQKLEDVLLEPPRAASGKSRVYLKRTKYLPDLM 279

Query: 278 DDSLEGYKRRVFIGVGL-REENKAAVEWFERNYPKKGTKFQIHSLLVAPEEDLPVPHSAD 336
            D+LE Y RRVFI VGL +++  +  +WF +NYP +   F+++ +    E   P     +
Sbjct: 280 GDTLESYPRRVFIDVGLPQKDGGSGTDWFSKNYPTRNKNFEMYKIETVVEGS-PTTQ-VE 337

Query: 337 FSDWLSKHXXXXXXXXXXXXXXXXXXXXXXRTIYLVDELFLECNNEWWQTGKQKKSRRAY 396
            SDWL K+                      ++I LVDELFLEC  +     +  + RRAY
Sbjct: 338 MSDWLMKNVKDEEYVVMKAEAEVVEEMMRSKSIMLVDELFLECKPQGLNLKRGTRGRRAY 397

Query: 397 WECLALYGRLRDEGVAVHQWWG 418
           WECLALYG+LRDEGVAVHQWWG
Sbjct: 398 WECLALYGKLRDEGVAVHQWWG 419


>Medtr3g100550.1 | peptide upstream ORF protein | LC |
           chr3:46246113-46244690 | 20130731
          Length = 419

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 188/402 (46%), Gaps = 65/402 (16%)

Query: 39  LALVFATLPFLGSFLNGSVVSEFAAKSGSSINVE-VLGLILHDLGEEGLLRK-EDKALIL 96
           L LV  TL      +N   ++     S +SI+ E  L ++ +DL  EGLL+K + K + +
Sbjct: 61  LLLVILTLASFQLIINAERIT-----SSNSIDTEETLSILFNDLKNEGLLKKTQHKMVFV 115

Query: 97  NTPRGFKGGVALLNWDNEV-----------NVVMDESYDFVITPSFEDAV-FADSVLKVN 144
            T +  K    L +++NE+           N V+D + DF+IT +F +A  F + VLK  
Sbjct: 116 ATEQSSK---VLTDYNNEIEYVPLNDIEKQNSVVDNTVDFIITTNFPEASRFIERVLKTE 172

Query: 145 GIVAFPLSDNASGSGFRK-QSHYKVVYLRRYGEIFVALRKIGLANKNLVDSSPKRKLCQF 203
           GIV   +++N   + F K   +YK+VY+R++  + VA++K   A                
Sbjct: 173 GIVTVLINNNNPTTSFYKLPKNYKIVYVRQFDSVVVAMKKSATA---------------- 216

Query: 204 TTETKXXXXXXXXXXXXXXXXXXDSSPKRKLCQFTTETKXXXXXXXXXXXXXXXXXXVDN 263
                                  + +  RKL  + ++ K                     
Sbjct: 217 ------------------INVKRNHAAPRKLFGYASDAKKIALQNLEDVLLEPPRAASGK 258

Query: 264 SNKNLK-IKYLPELLDDSLEGYKRRVFIGVGLRE-ENKAAVEWFERNYPKKGTKFQIHSL 321
           S K LK  +YLP+L+ DSLE Y RRVFI VGL E E  +  +WF +NYP +   F+++ +
Sbjct: 259 SRKYLKRTRYLPDLMGDSLESYTRRVFIDVGLPEKEGGSGTDWFSKNYPTRNKNFEMYKI 318

Query: 322 --LVAPEEDLPVPHSAD---FSDWLSKHXXXXXXXXXXXXXXXXXXXXXXRTIYLVDELF 376
              V  EE+     ++     SDWL+K+                        I LVDELF
Sbjct: 319 ETRVMTEEESSRKEASSKIGMSDWLNKNVKEEEYVVMKAEAEVVEEMMRSNNIGLVDELF 378

Query: 377 LECNNEWWQTGKQKKSRRAYWECLALYGRLRDEGVAVHQWWG 418
           LEC         + K+RRAYWECLALYG+LRDEGVAVHQWWG
Sbjct: 379 LECKPRH-GFKIENKNRRAYWECLALYGKLRDEGVAVHQWWG 419


>Medtr4g013290.1 | methyltransferase domain protein | HC |
           chr4:3695664-3697901 | 20130731
          Length = 509

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 368 TIYLVDELFLECNNEWWQTG----KQKKSRRAYWECLALYGRLRDEGVAVHQWW 417
            I LVDE+FLEC+   WQ      +  K  + Y +CL L+  LR  GV VHQW+
Sbjct: 456 AICLVDEIFLECHYNRWQRCCPGQRSPKYEKTYDQCLQLFNSLRQSGVLVHQWF 509


>Medtr7g070530.1 | methyltransferase domain protein | HC |
           chr7:26047730-26045559 | 20130731
          Length = 509

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 368 TIYLVDELFLECNNEWWQTG----KQKKSRRAYWECLALYGRLRDEGVAVHQWW 417
            I L+DE+FLEC+   WQ      +  K  + Y +CL L+  LR  G+ VHQW+
Sbjct: 456 AICLIDEIFLECHYNRWQRCCPGQRSSKYEKTYDQCLELFNSLRQSGILVHQWF 509