Miyakogusa Predicted Gene

Lj4g3v0363540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0363540.1 Non Characterized Hit- tr|B9S918|B9S918_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,38.82,0.00000005,coiled-coil,NULL; seg,NULL,CUFF.47014.1
         (171 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g082330.1 | transmembrane protein, putative | HC | chr4:32...    74   5e-14

>Medtr4g082330.1 | transmembrane protein, putative | HC |
           chr4:32062499-32059376 | 20130731
          Length = 189

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 79/189 (41%), Gaps = 29/189 (15%)

Query: 6   EDIKDWEQIEQHPSPETTSEWNMVTKINKSYLNV------------------HDHQXXXX 47
           E+I +W++IEQH + E+ S WN +     + + V                  H+      
Sbjct: 2   EEINEWQEIEQHTTLES-SGWNRIIIKENNNIEVQGGSNPPSSCSSSSTPTHHEEGISSP 60

Query: 48  XXXXXXNELXXXXXXXXXXXHLDWWRRVAYEGKKLLEAVRV--------VGNSAVCSGTF 99
                                LDW   V    K  +EA+RV        V N A+C+G F
Sbjct: 61  MTASSSVGGEKGETPTPAATPLDWANEVNKMLKVRMEAMRVEIVRVASKVRNCAMCAGAF 120

Query: 100 WSITCXXXXXXXXXXXEIXXXXXXXXXXSVDHAVCLLREKDERISQLLLQIAQLNEVLLS 159
           WSITC                        VD +  LLR+KDE+ISQLLL IA LNE L S
Sbjct: 121 WSITCVAGAVAVTAVL--VYVGIQRRRRKVDGSEYLLRQKDEKISQLLLNIAHLNEALSS 178

Query: 160 RRQVPVHRI 168
           RR+V VHRI
Sbjct: 179 RRKVQVHRI 187