Miyakogusa Predicted Gene

Lj4g3v0341100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0341100.1 tr|I3SEI0|I3SEI0_LOTJA Alternative oxidase
OS=Lotus japonicus PE=2 SV=1,99.68,0,SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL; AOX,Alternative oxidase,CUFF.46967.1
         (314 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g070680.1 | ubiquinol oxidase 1a | HC | chr5:29933297-2993...   530   e-151
Medtr5g070870.1 | ubiquinol oxidase 1a | HC | chr5:29936021-2993...   524   e-149
Medtr4g094222.1 | ubiquinol oxidase 1a | HC | chr4:37468261-3747...   425   e-119
Medtr5g026620.1 | ubiquinol oxidase 1a | HC | chr5:10973893-1097...   382   e-106
Medtr5g026620.2 | ubiquinol oxidase 1a | HC | chr5:10973817-1097...   340   2e-93
Medtr2g025140.1 | ubiquinol oxidase | HC | chr2:8939905-8935418 ...    65   8e-11

>Medtr5g070680.1 | ubiquinol oxidase 1a | HC |
           chr5:29933297-29930958 | 20130731
          Length = 323

 Score =  530 bits (1365), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/328 (78%), Positives = 277/328 (84%), Gaps = 19/328 (5%)

Query: 1   MKHTLARSATRALFNSA--------------ARHQHGGGACGSLFWRRMSTLPEVKDHQS 46
           MK++L RS  RALF+S+               RHQ+GGG  GS +W++MSTLPE KD  S
Sbjct: 1   MKNSLLRSTARALFHSSRNYHCSFSTAVIVQPRHQNGGGTRGSFYWQKMSTLPEKKDQHS 60

Query: 47  EEKKSEVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKHH 106
           EE     N+N + +NTVV SYWGITRPKV+REDGTEWPWNCF PW+SY +DVSIDVTKHH
Sbjct: 61  EE-----NKNSNDSNTVVSSYWGITRPKVKREDGTEWPWNCFMPWESYSSDVSIDVTKHH 115

Query: 107 LPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQ 166
           +PKT  DK AFR+VKFLRVLSDLYFKERYGCHAMMLETIAAVP MVGGMLLHLKSLRKFQ
Sbjct: 116 VPKTFGDKFAFRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPPMVGGMLLHLKSLRKFQ 175

Query: 167 HSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGXXXXXXXXXYLLSPKAAH 226
           H+GGWIKALLEEAENERMHLMTM ELVKPSWHERLLVITAQG         Y+LSPK AH
Sbjct: 176 HTGGWIKALLEEAENERMHLMTMVELVKPSWHERLLVITAQGVFFNAFFVFYILSPKTAH 235

Query: 227 RFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAH 286
           RFVGYLEEEAVISYT HLNAIE G+VENVPAPAIAIDYWRLPKDATLKDV+TVIRADEAH
Sbjct: 236 RFVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVITVIRADEAH 295

Query: 287 HRDVNHFASDIHHQGKELKEAPAPVGYH 314
           HRDVNHFASDIHHQGKELKEAPAP+GYH
Sbjct: 296 HRDVNHFASDIHHQGKELKEAPAPIGYH 323


>Medtr5g070870.1 | ubiquinol oxidase 1a | HC |
           chr5:29936021-29933520 | 20130731
          Length = 324

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/329 (77%), Positives = 275/329 (83%), Gaps = 20/329 (6%)

Query: 1   MKHTLARSATRALFNSAAR---------------HQHGGGACGSLFWRRMSTLPEVKDHQ 45
           M++ L RS  RALF +                  HQHGGGACG+L+W+RMSTLPE KD Q
Sbjct: 1   MRNILLRSTARALFRNGGNYHRSFSTAVIVQPRHHQHGGGACGNLYWQRMSTLPEKKDQQ 60

Query: 46  SEEKKSEVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKH 105
           +EE K      D+++N VV SYWGI+RPKV +EDGTEWPWNCF PW+SY +DVSIDVTKH
Sbjct: 61  TEESK-----KDANHNAVVSSYWGISRPKVLKEDGTEWPWNCFMPWESYSSDVSIDVTKH 115

Query: 106 HLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKF 165
           H+PKT  DK AFR+VKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKF
Sbjct: 116 HVPKTFGDKFAFRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKF 175

Query: 166 QHSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGXXXXXXXXXYLLSPKAA 225
           QH+GGWIKALLEEAENERMHLMTM ELVKPSWHERLLVITAQG         Y+LSPK A
Sbjct: 176 QHAGGWIKALLEEAENERMHLMTMVELVKPSWHERLLVITAQGVFFNGFFVFYILSPKIA 235

Query: 226 HRFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEA 285
           HRFVGYLEEEAVISYT +LNAIE G+VENVPAPAIAIDYWRLP DATLKDVVTVIRADEA
Sbjct: 236 HRFVGYLEEEAVISYTQYLNAIESGKVENVPAPAIAIDYWRLPNDATLKDVVTVIRADEA 295

Query: 286 HHRDVNHFASDIHHQGKELKEAPAPVGYH 314
           HHRDVNHFASDIHHQGKELKEAPAPVGYH
Sbjct: 296 HHRDVNHFASDIHHQGKELKEAPAPVGYH 324


>Medtr4g094222.1 | ubiquinol oxidase 1a | HC |
           chr4:37468261-37471472 | 20130731
          Length = 345

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/307 (64%), Positives = 235/307 (76%), Gaps = 11/307 (3%)

Query: 19  RHQHGGGACGSLF-WRRMSTLPEVKDHQSEEKKS----------EVNRNDSSNNTVVPSY 67
           +H +  G  G LF W+RM +        S E+            +   + + NN V  SY
Sbjct: 39  KHLYADGGNGGLFYWKRMMSSQAAPSKPSAEETEAKSTEKNEKKKEESSGTKNNVVASSY 98

Query: 68  WGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKHHLPKTVTDKVAFRAVKFLRVLS 127
           WGI+RPK+ REDGTEWPWNCF PW++Y+++VSID+ KHH+PK   DKVA+R VK LR+ +
Sbjct: 99  WGISRPKIMREDGTEWPWNCFMPWETYQSNVSIDLNKHHVPKNFLDKVAYRTVKLLRIPT 158

Query: 128 DLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 187
           D++FK RYGC AMMLET+AAVPGMVGGMLLHLKSLRKFQHSGGW+KALLEEAENERMHLM
Sbjct: 159 DVFFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWVKALLEEAENERMHLM 218

Query: 188 TMTELVKPSWHERLLVITAQGXXXXXXXXXYLLSPKAAHRFVGYLEEEAVISYTDHLNAI 247
           TM ELVKP W+ER LV+  QG         Y+LSPK AHR VGYLEEEA+ SYT++L  I
Sbjct: 219 TMVELVKPKWYERFLVLAVQGVFFNAFFVLYILSPKVAHRVVGYLEEEAIHSYTEYLKDI 278

Query: 248 ERGEVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEA 307
           + G +ENVPAPAIAIDYWRLPKDA LKDV+TVIRADEAHHRDVNHFASDIH  GKEL++A
Sbjct: 279 DSGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFHGKELRDA 338

Query: 308 PAPVGYH 314
           PAP+GYH
Sbjct: 339 PAPLGYH 345


>Medtr5g026620.1 | ubiquinol oxidase 1a | HC |
           chr5:10973893-10970470 | 20130731
          Length = 330

 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/282 (62%), Positives = 221/282 (78%), Gaps = 3/282 (1%)

Query: 36  STLPEVKDHQSEEK---KSEVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWD 92
           + L + KD+++ +K    S+    D+ +   + SYWG+   K+ + DGTEW WNCF PW+
Sbjct: 49  ANLSDQKDNKNVDKTPPSSQGGAGDNKDEKGITSYWGVQPSKITKPDGTEWKWNCFRPWE 108

Query: 93  SYRADVSIDVTKHHLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMV 152
           +Y+ADV+ID+TKHH P T  DK+A+  VK LR  +D++F+ RYGC AMMLET+AAVPGMV
Sbjct: 109 TYKADVTIDLTKHHKPTTFLDKMAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGMV 168

Query: 153 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGXXXX 212
           GGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT  E+ KP W+ER LVIT QG    
Sbjct: 169 GGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFN 228

Query: 213 XXXXXYLLSPKAAHRFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKDAT 272
                YLLSPK AHR VGYLEEEA+ SYT+ L  +++G +ENVPAPAIAIDYW+LP+++T
Sbjct: 229 AYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPQNST 288

Query: 273 LKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGYH 314
           L+DVV V+RADEAHHRDVNHFASDIH+QG+EL+EA AP+GYH
Sbjct: 289 LRDVVEVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 330


>Medtr5g026620.2 | ubiquinol oxidase 1a | HC |
           chr5:10973817-10971044 | 20130731
          Length = 262

 Score =  340 bits (871), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 156/225 (69%), Positives = 188/225 (83%)

Query: 90  PWDSYRADVSIDVTKHHLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVP 149
           PW++Y+ADV+ID+TKHH P T  DK+A+  VK LR  +D++F+ RYGC AMMLET+AAVP
Sbjct: 38  PWETYKADVTIDLTKHHKPTTFLDKMAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVP 97

Query: 150 GMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGX 209
           GMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT  E+ KP W+ER LVIT QG 
Sbjct: 98  GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 157

Query: 210 XXXXXXXXYLLSPKAAHRFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPK 269
                   YLLSPK AHR VGYLEEEA+ SYT+ L  +++G +ENVPAPAIAIDYW+LP+
Sbjct: 158 FFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPQ 217

Query: 270 DATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGYH 314
           ++TL+DVV V+RADEAHHRDVNHFASDIH+QG+EL+EA AP+GYH
Sbjct: 218 NSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 262


>Medtr2g025140.1 | ubiquinol oxidase | HC | chr2:8939905-8935418 |
           20130731
          Length = 342

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 24/186 (12%)

Query: 123 LRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 182
           +++L  LY ++R      +LETIA VP      +LH+     +     ++K    E+ NE
Sbjct: 105 IKILDALY-RDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNE 163

Query: 183 RMHLMTMTELVKPS-WHERLLVITAQGXXXXXXXXXYLLSPKAAHRFVGYLEEEAVISYT 241
             HL+ M EL   + W +R L               YL+SP+ A+ F   +E  A  +Y 
Sbjct: 164 MHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYD 223

Query: 242 DHLNAIERG-EVENVPAPAIAIDYW-------------------RLPKDATLKDVVTVIR 281
             +   E+G E++ +PAP +A++Y+                   R P    L DV   IR
Sbjct: 224 KFIK--EQGEELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDVFLNIR 281

Query: 282 ADEAHH 287
            DEA H
Sbjct: 282 DDEAEH 287