Miyakogusa Predicted Gene

Lj4g3v0341080.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0341080.2 Non Characterized Hit- tr|C6T3F4|C6T3F4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.33499 PE,60.76,2e-18,no
description,NULL; HMA_1,Heavy-metal-associated, conserved site;
HMA,Heavy metal-associated domain,CUFF.46991.2
         (216 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094232.1 | copper-transporting ATPase PAA1, putative | HC...   207   9e-54
Medtr7g116990.1 | heavy-metal-associated domain protein | HC | c...    99   4e-21
Medtr3g105190.1 | copper-transporting ATPase PAA1, putative | HC...    56   3e-08
Medtr3g105190.2 | copper-transporting ATPase PAA1, putative | HC...    56   3e-08

>Medtr4g094232.1 | copper-transporting ATPase PAA1, putative | HC |
           chr4:37481203-37497840 | 20130731
          Length = 943

 Score =  207 bits (526), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 134/215 (62%), Gaps = 11/215 (5%)

Query: 3   MDSAACSVTTTAQMALFRALHRQFTGASHNRALLRRNLKCVASSSINCFRIPC------- 55
           MDSA  +VTTTAQM LFRALHR F+GA H R LL RN K   +S  N F IPC       
Sbjct: 1   MDSA-ITVTTTAQMLLFRALHRHFSGAPH-RTLLHRNFKRAVTSYNNRFHIPCSSASCTS 58

Query: 56  TFTXXXXXXXXXRTFCAPRCCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAN 115
           T +         R  C  RC                                     D +
Sbjct: 59  TPSLRNFGALLSRIPCRTRCVSSSAASFGSSAGGGNGGAGVGNGGGGGGSGSGGESGDGS 118

Query: 116 LKLVGAGDAAQELSALSPDVIILDVSGMVCGGCAATVKRLLESRPQVSSASVNLTTETAI 175
           +KLVG  DAAQE+S+LSPDVIILDVSGMVCGGCAA+VKR+LES+PQVSSASVNLTTETAI
Sbjct: 119 VKLVG--DAAQEVSSLSPDVIILDVSGMVCGGCAASVKRILESQPQVSSASVNLTTETAI 176

Query: 176 VWPVSEAKTAPNWQHQLGETLAEHLTSCGFNSSIR 210
           VWPVSEAK A NWQ QLG+TLAEHLTSCGFNS +R
Sbjct: 177 VWPVSEAKAAANWQKQLGKTLAEHLTSCGFNSCLR 211


>Medtr7g116990.1 | heavy-metal-associated domain protein | HC |
           chr7:48310645-48308630 | 20130731
          Length = 165

 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 63/81 (77%), Gaps = 3/81 (3%)

Query: 136 IILDVSGMVCGGCAATVKRLLESRPQVSSASVNLTTETAIVW---PVSEAKTAPNWQHQL 192
           ++L V GM+C GCA++VK+LLE++PQV SA+VNL +E A+V     +S+ KTA +WQ QL
Sbjct: 82  VVLHVQGMMCEGCASSVKKLLETQPQVLSANVNLASEIALVSLSPLLSQEKTATDWQKQL 141

Query: 193 GETLAEHLTSCGFNSSIRGDE 213
           GE LA HLT+CGF S++RG E
Sbjct: 142 GEKLAHHLTTCGFTSTLRGQE 162


>Medtr3g105190.1 | copper-transporting ATPase PAA1, putative | HC |
           chr3:48478621-48488601 | 20130731
          Length = 892

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 136 IILDVSGMVCGGCAATVKRLLESRPQVSSASVNLTTETAIVWPVSEAKTAPNWQHQLGET 195
           ++LDV+GM+CGGC + VK +L S  +V S  VN+ TETA V    + K        + + 
Sbjct: 87  VLLDVTGMMCGGCVSRVKTILSSDDRVDSVVVNMLTETAAV----KLKKLEEESTSVADG 142

Query: 196 LAEHLTSCGFNSSIR 210
           LA  LT CGF +  R
Sbjct: 143 LARRLTGCGFPTKRR 157


>Medtr3g105190.2 | copper-transporting ATPase PAA1, putative | HC |
           chr3:48478621-48488601 | 20130731
          Length = 768

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 136 IILDVSGMVCGGCAATVKRLLESRPQVSSASVNLTTETAIVWPVSEAKTAPNWQHQLGET 195
           ++LDV+GM+CGGC + VK +L S  +V S  VN+ TETA V    + K        + + 
Sbjct: 87  VLLDVTGMMCGGCVSRVKTILSSDDRVDSVVVNMLTETAAV----KLKKLEEESTSVADG 142

Query: 196 LAEHLTSCGFNSSIR 210
           LA  LT CGF +  R
Sbjct: 143 LARRLTGCGFPTKRR 157