Miyakogusa Predicted Gene

Lj4g3v0340930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340930.1 Non Characterized Hit- tr|K4BNG5|K4BNG5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.73,4e-19,Zn-binding ribosomal proteins,Ribosomal protein,
zinc-binding domain; rpmF_bact: ribosomal protein L,CUFF.47004.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g025320.2 | ribosomal protein L32 | HC | chr1:8082271-8076...   164   1e-41
Medtr1g025320.1 | ribosomal protein L32 | HC | chr1:8082271-8076...   164   1e-41
Medtr1g025320.3 | ribosomal protein L32 | HC | chr1:8082271-8076...   164   1e-41
Medtr1g025320.4 | ribosomal protein L32 | HC | chr1:8082271-8076...   155   7e-39
Medtr1g025320.5 | ribosomal protein L32 | HC | chr1:8082271-8076...   155   7e-39

>Medtr1g025320.2 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 126

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 93/126 (73%), Gaps = 3/126 (2%)

Query: 1   MATRFAILRGNGRNL---LGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFG 57
           M  R AILR   R L   LGFNRL HSVPQ+PPL GSID G+ S +PVLPEF SP+FSFG
Sbjct: 1   MTMRIAILRDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFG 60

Query: 58  DSMELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 117
            SMELMAVP            NGPKALKP+ VLVLCKGCGRVRLPH+YCCSGKPN ++TG
Sbjct: 61  GSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTG 120

Query: 118 EQNGRN 123
            +NG N
Sbjct: 121 GENGTN 126


>Medtr1g025320.1 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 126

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 93/126 (73%), Gaps = 3/126 (2%)

Query: 1   MATRFAILRGNGRNL---LGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFG 57
           M  R AILR   R L   LGFNRL HSVPQ+PPL GSID G+ S +PVLPEF SP+FSFG
Sbjct: 1   MTMRIAILRDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFG 60

Query: 58  DSMELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 117
            SMELMAVP            NGPKALKP+ VLVLCKGCGRVRLPH+YCCSGKPN ++TG
Sbjct: 61  GSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTG 120

Query: 118 EQNGRN 123
            +NG N
Sbjct: 121 GENGTN 126


>Medtr1g025320.3 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 126

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 93/126 (73%), Gaps = 3/126 (2%)

Query: 1   MATRFAILRGNGRNL---LGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFG 57
           M  R AILR   R L   LGFNRL HSVPQ+PPL GSID G+ S +PVLPEF SP+FSFG
Sbjct: 1   MTMRIAILRDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFG 60

Query: 58  DSMELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 117
            SMELMAVP            NGPKALKP+ VLVLCKGCGRVRLPH+YCCSGKPN ++TG
Sbjct: 61  GSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTG 120

Query: 118 EQNGRN 123
            +NG N
Sbjct: 121 GENGTN 126


>Medtr1g025320.4 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 137

 Score =  155 bits (393), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 85/108 (78%)

Query: 16  LGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFGDSMELMAVPXXXXXXXXX 75
           LGFNRL HSVPQ+PPL GSID G+ S +PVLPEF SP+FSFG SMELMAVP         
Sbjct: 30  LGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFGGSMELMAVPKRKTSPHKR 89

Query: 76  XXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTGEQNGRN 123
              NGPKALKP+ VLVLCKGCGRVRLPH+YCCSGKPN ++TG +NG N
Sbjct: 90  GIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTGGENGTN 137


>Medtr1g025320.5 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 137

 Score =  155 bits (393), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 85/108 (78%)

Query: 16  LGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFGDSMELMAVPXXXXXXXXX 75
           LGFNRL HSVPQ+PPL GSID G+ S +PVLPEF SP+FSFG SMELMAVP         
Sbjct: 30  LGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFGGSMELMAVPKRKTSPHKR 89

Query: 76  XXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTGEQNGRN 123
              NGPKALKP+ VLVLCKGCGRVRLPH+YCCSGKPN ++TG +NG N
Sbjct: 90  GIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTGGENGTN 137